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  • % Polar/ Non-Polar

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    Judy Mae Duran
    12 views3 pages
    This document contains information about two protein sequences, including: 1. The amino acid sequences and percentages of different amino acids in each sequence. 2. How the net charge of each sequence changes with increasing pH. 3. Details are provided about alpha helices and beta sheets, residues that stabilize secondary structure, domains, shape, metal cofactors, and distances/angles of significant parts, but no values are given.

    Original Description:

    all about pymol and protein

    Original Title

    biochemistry

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    This document contains information about two protein sequences, including: 1. The amino acid sequences and percentages of different amino acids in each sequence. 2. How the net charge of each sequence changes with increasing pH. 3. Details are provided about alpha helices and beta sheets, residues that stabilize secondary structure, domains, shape, metal cofactors, and distances/angles of significant parts, but no values are given.

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    © All Rights Reserved
    Download as DOCX, PDF, TXT or read online from Scribd
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    Download as docx, pdf, or txt
    12 views3 pages

    % Polar/ Non-Polar

    Uploaded by

    Judy Mae Duran
    This document contains information about two protein sequences, including: 1. The amino acid sequences and percentages of different amino acids in each sequence. 2. How the net charge of each sequence changes with increasing pH. 3. Details are provided about alpha helices and beta sheets, residues that stabilize secondary structure, domains, shape, metal cofactors, and distances/angles of significant parts, but no values are given.

    Copyright:

    © All Rights Reserved
    Download as DOCX, PDF, TXT or read online from Scribd
    Flag for inappropriate content
    Download as docx, pdf, or txt
    of 3

    1.

    Sequence
    KIRPECFELLRVLGKGGYGKVFQVRKTGANTGKIFAMKVLKKAMIVRNAKDTAHTKARNILEEVK
    HPFIVDLIYASQTGGKLYLLILEYLSGGELFMQLEREGIFMEDTACFYLAEISMALGHLHQKGII
    YRDLKDENIMLMHQGHDKLTDFGLCKESIHDTHPKTPOFCGTIEYMATEILMRSGHNRAVDWWSL
    GALMYDMLTGAPPFTGENRKKTIDKILKCKLNLTPYLTQEARDLLKKLLKRNAASLRGAPGDAGE
    VQAHFFFRHINWEELLARKVERPPFKPLLQ

    2. % amino acid
    1
    st
    Sequence
    H- 12.25%
    K- 21.35%
    R-9.48%
    S-6.75%
    T-9.48%
    C-4.69%
    D-7.87%
    F-18.75%
    Y-9.38%

    2
    nd
    Sequence
    H- 4.55%
    K- 20.55%
    R- 13.64%
    S- 11.36%
    T- 6.81%
    C- 4.51%
    D- 11.32%
    E- 20.45%
    Y- 6.81%

    3. % polar/ non-polar


    4. Change when pH increases
    1
    st
    Sequence
    0pH=28
    1.8pH=20
    3.9pH=15
    4.1pH=3
    8.3pH=0
    4.2pH=-14
    10.1pH= -20
    12.5pH= -26
    12pH= -36

    2
    nd
    Sequence
    0pH=17
    1.1pH= 16
    3.9pH= 11
    4.1pH= 2
    6pH= 0
    8.3pH= -2
    9.2pH= -3
    10.1pH= -6
    10.8pH= -15
    12.5pH= -21
    13pH= -29

    5. No. of alpha and beta

    6. Residue for alpha and beta/ random coil

    7. Residue that stabilizes alpha/beta
    S-S Bond
    Acid-base interaction

    8. Domains
    Functional
    Structural

    9. Shape of the protein:
    Coral Shaped


    10. Metal Cofactor
    Zn cofactor
    11. Distances/ Angles for the significant parts of the proteins

    12. Peptide Units

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