This data set contains two tables. First, it presents data used for evaluating cancer tissue.

Next it presents the cancer cell line

Primary cancer tissues (i.e. non-cell line data)
Data label (color)
Tissue
Platform Data Use n (Prop.Female)
Median Age(range)
Citation Availability cor(Age,DNAmAge)
1 (turquoise)
Bladder
450k
Cancer tissue
117 (0.3) 68 (34,87) TCGA
TCGA
0.05
2 (blue)
BoneMarrow
450k
Cancer tissue
194 (0.5) 58 (18,88) TCGA
TCGA
0.09
3 (brown) Brain
450k
Cancer tissue
142 (0.5) 26 (-0.5,75)Sturm 2012 GSE36278
0.61
4 (black) Breast
27k
Cancer tissue
100 (1)
52 (20,96) Fackler 2011GSE31979
0.49
5 (green) Breast
27k
Cancer tissue
224 (1)
55 (45,55) Dedeurwaerder
GSE20712
2011
0.3
6 (red)
Breast
27k
Cancer tissue
108 (1)
59 (30,90) Zhuang 2012
GSE32393
0.34
7 (black) Breast
27k
Cancer tissue
312 (1)
60 (29,90) TCGA
TCGA
0.25
8 (pink)
Breast
450k
Cancer tissue
493 (0.9) 58 (26,90) TCGA
TCGA
0.29
9 (magenta)Cervix
450k
Cancer tissue
40 (0.5)
48 (25,79) TCGA
TCGA
0.21
10 (purple) Colorectal 27k
Cancer tissue
154 (0.6) 68 (33,90) Hinoue 2012
GSE25062
0.37
11 (blue2) Colon.COAD27k
Cancer tissue
166 (0.4) 72 (36,90) TCGA
TCGA
0.11
12 (tan) Colon.COAD450k
Cancer tissue
200 (0.3) 68 (31,90) TCGA
TCGA
0.02
13 (salmon)Head/Neck 450k
Cancer tissue
309 (0.3) 61 (19,90) TCGA
TCGA
0.13
14 (cyan) Kidney.KIRC27k
Cancer tissue
219 (0.3) 59 (33,86) TCGA
TCGA
0.47
15 (midnightblue)
Kidney.KIRC450k
Cancer tissue
283 (0.3) 61 (26,90) TCGA
TCGA
0.47
16 (darkblue)
Kidney.KIRP450k
Cancer tissue
85 (0.4)
60 (28,83) TCGA
TCGA
0.38
17 (grey60)Liver
450k
Cancer tissue
68 (0.4)
66 (20,81) TCGA
TCGA
0.42
18 (lightgreen)
Lung.LUAD 27k
Cancer tissue
127 (0.5) 67 (38,84) TCGA
TCGA
-0.05
19 (darkcyan)
Lung.LUAD 450k
Cancer tissue
262 (0.4) 65 (40,86) TCGA
TCGA
0.3
20 (royalblue)
Lung.LUSC 27k
Cancer tissue
133 (0.3) 67 (39,84) TCGA
TCGA
0.2
21 (darkred)Lung.LUSC 450k
Cancer tissue
191 (0.7) 70 (40,85) TCGA
TCGA
0.33
22 (darkgreen)
Ovary
27k
Cancer tissue
601 (0.8) 59 (26,89) TCGA
TCGA
0.07
23 (darkturquoise)
Prostate 27k
Cancer tissue
193 (0.02) 61 (43,73) Kobayashi 2011
GSE26126
0.32
24 (darkgrey)
Prostate 450k
Cancer tissue
103 (0.4) 61 (44,73) TCGA
TCGA
0.22
25 (orange)Rectum.READ
27k
Cancer tissue
69 (0.4)
66 (35,89) TCGA
TCGA
0.08
26 (darkorange)
Rectum.READ
450k
Cancer tissue
95 (0.4)
65 (31,90) TCGA
TCGA
0
27 (plum) Sarcoma 450k
Cancer tissue
26 (0.3)
61 (40,81) TCGA
TCGA
0.1
28 (skyblue)Skin
450k
Cancer tissue
185 (0.6) 57 (18,90) TCGA
TCGA
0.25
29 (saddlebrown)
Thyroid
450k
Cancer tissue
291 (0.6) 47 (16,89) TCGA
TCGA
0.6
30 (steelblue)
Urothelium27k
Cancer tissue
156 (0.8) 72 (38,91) Lauss 2012 GSE33510
0.17
31 (paleturquoise)
UterineCorpusEndom
450k
Cancer tissue
63 (1)
65 (35,89) TCGA
TCGA
0.22
32 (violet) UterineCorpusEndom
27k
Cancer tissue
117 (1)
63 (35,90) TCGA
TCGA
0.09
Cancer cell line data
Data Set DescriptionPlatform Use
1 Glioma Stem
450k
Cell
Cell line
2 HNSCC cell 450k
Cell line
3 Urinary tract450k
T24
Cell line
4 AML cell line
450k
Cell line
5 Breast cancer
450k
cell
Cell line
6 GBM stem 27k
cell
Cell line
7 Osteosarcoma
27kcell line Cell line

n (size)
16
24
8
4
26
6
25

Age range Citation Availability

Rohle 2013GSE45199
Lechner 2013
GSE38270
Yang 2013 GSE41525
Leonard 2013
GSE44830
Di Cello 2013
GSE44837
Rheinbay 2013
GSE46015
Kresse 2012GSE36002

ext it presents the cancer cell line data.

Median error
Median
(Age, m.age(Train.CpGs))
AgeAcceleration(Train.CpGs)
31.3
26.9
52.3
52.7
69.8
67.2
44.2
42.9
50.6
49.5
46.9
45.1
46.2
45.2
47.7
45.1
41.7
38.2
26.2
21.9
27.4
25.5
31.7
29.6
29.6
26.1
50.9
51.2
46.8
46.9
36.4
37.9
38.8
39.5
43.9
42.8
40.2
38.5
32.5
29.4
28.9
26.8
29.4
25.7
43.4
42.9
41.7
40.9
33
29.7
29.9
28.1
37.4
34.5
36.8
35.3
53.7
53.1
31.6
30
15.2
5.3
19.4
12.9