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Influence of Fibrinogen Concentration On Young's Modulus in Fibrin Gels
Influence of Fibrinogen Concentration On Young's Modulus in Fibrin Gels
Abstract
For tissue engineering a heart valve, the idea has risen to combine the advantages of
polycaprolactone and fibrin by using the first as a mechanical backbone and the latter as a
cell-delivery substance surrounding the backbone. The mechanical properties of fibrin should
still be high enough to be used as part of a scaffold for a heart valve. Therefore, a
reproducible protocol has been developed to determine the Youngs modulus using a tensile
testing machine. Also, the influence of fibrinogen concentration in fibrin gels on the Youngs
modulus has been determined, by using the developed protocol. The protocol consisted of
making gels, which originated from mixing a fibrinogen solution with a thrombin solution.
This was done for fibrinogen solutions with a concentration of 4, 8, 10, 14, 18 and 30 mg/ml
and a thrombin solution of 5 IU/ml. Then the fibrin gels were placed in the tensile testing
machine with dimensions 5 mm in width and 30 mm in length. The results showed a linear
increasing Youngs modulus with increasing strain for all samples. The correlation between
the Youngs modulus and the concentration was linearly increasing until a concentration of
about 14 mg/ml showing a maximum initial Youngs modulus of 9995 Pa (+-185.5) and a
maximum Youngs modulus at +-20 % strain of 29600 Pa (+-932.8). The reproducibility was
higher at high fibrinogen concentrations than at lower ones. The developed protocol is
especially suited for the testing of fibrin gels with a high fibrinogen concentration.
Table of contents
Abstract ---------------------------------------------------------------------------------------- 2
1. Introduction -------------------------------------------------------------------------------- 4
1.1 Fibrinogen ------------------------------------------------------------------------------ 5
1.1.1 Structure---------------------------------------------------------------------------- 5
1.1.2 Formation of fibrin network ----------------------------------------------------- 6
1.2 Mechanics------------------------------------------------------------------------------- 6
1.2.1 Neo-Hookean ---------------------------------------------------------------------- 7
1.2.1.1 Uniaxial extension -------------------------------------------------------------- 7
1.2.1.2 Planar extension ---------------------------------------------------------------- 9
2. Materials and Methods------------------------------------------------------------------ 10
2.1 Fibrin gel preparation ---------------------------------------------------------------- 11
2.2 Tensile testing ------------------------------------------------------------------------- 11
2.3 Data processing ----------------------------------------------------------------------- 12
2.4 SEM preparation ---------------------------------------------------------------------- 12
2.5 Rheology testing ----------------------------------------------------------------------- 12
3. Results -------------------------------------------------------------------------------------- 14
3.1 Uniaxial extension -------------------------------------------------------------------- 14
3.2 Planar extension ---------------------------------------------------------------------- 17
3.3 SEM ------------------------------------------------------------------------------------- 18
3.4 Rheometer------------------------------------------------------------------------------ 18
Conclusions----------------------------------------------------------------------------------- 19
Discussion------------------------------------------------------------------------------------- 20
Acknowledgements-------------------------------------------------------------------------- 22
References: ----------------------------------------------------------------------------------- 22
Appendix A----------------------------------------------------------------------------------- 23
Appendix B ----------------------------------------------------------------------------------- 24
Appendix C----------------------------------------------------------------------------------- 26
1. Introduction
Tissue engineering has emerged as a rapidly expanding approach to address the organ
shortage problem. It is an interdisciplinary field that applies the principles and methods of
engineering and the life sciences toward the development of biological substitutes that can
restore, maintain, or improve tissue function. Much progress has been made in the tissue
engineering of structures relevant to cardiothoracic surgery, including heart valves, blood
vessels and myocardium [1]. Usually, isolated cells are used to engineer new tissues. The
cells are seeded on a three dimensional scaffold followed by in vitro culturing. The scaffolds
serve as physical supports and templates for cell attachment and tissue development [2].
The requirements for an ideal scaffold are the easy handling and moulding of complex 3-D
structures like valve conduits or vessels with complex side branches. The material should not
be toxic or have any immunologic side effects. The diffusion barrier of the scaffold has to be
as low as possible to guarantee an optimal nutrition in thicker tissues. The mechanical as well
as the chemical properties (e.g. the integration of growth factors) should be modifiable. The
control of the degradation is important to adapt the structural support of the scaffold to the
tissue development. Many substances are used in the production of scaffolds, e.g. synthetic
polymers, natural polymers or biological scaffolds [2].
Fibrin is a biodegradable polymer and the major component of blood clots. It is formed by
polymerisation of fibrinogen monomers catalysed by thrombin. In comparison to other
materials used for tissue engineering purposes, fibrin gel combines some important
advantages. At first, the degradation rate is controllable and can be adapted to the tissue
development. Beyond it, fibrin gel can be produced from patients blood and therefore
immunogenic reactions are improbable [2]. Inhomogeneous distribution of cells in a scaffold
is often a problem. In contrast, when cells are incorporated before gelling, the distribution in
the fibrin gel is homogeneous from the beginning, caused by the fast immobilization of the
cells during the polymerisation of the gel/cell suspension within a few minutes. Structures
with a layer thickness up to 3 mm can be produced without the problem of local cell necrosis
caused by diminished diffusion [2].
A major disadvantage of fibrin is the mechanical stiffness, which seems to be low (table 1.1).
Table 1.1 Details of experiments with fibrin gels.
Reference Quantity
Fibrinogen
Value
concentration range
(mg/ml)
(kPa)
[3]
Youngs
0.5-3
0.93-6.49
modulus
[4]
Storage shear 0-6
0-0.15
modulus
[5]
Youngs
30-70
6.7-23.9
modulus at
10% strain
[6]
Tensile
25-75
2-fold
Strength
increase
[7]
Youngs
modulus
16-28
12
[8]
Tensile
Strength
20-60
5-fold
increase
Correlation
Experiment
Unclear
Uniaxial extension
Unclear
Rheometer
Unclear
Uniaxial extension
Rate=25 mm/min
Directly
proportional to
concentration
of fibrinogen
Not influenced
by fibrinogen
concentration
Unclear
Tensile testing
Tensile testing
Rate= 30 mm/min
Unclear
The influence of the fibrinogen concentration in fibrin on the mechanical properties has been
investigated but researchers have produced varying values for this influence and also for the
Youngs modulus; unfortunately, often the testing protocol is unclear. Moreover, the testing
protocols, if known, are very different.
Other materials have been considered, like polycaprolactone. This material is well suited to be
knitted as a scaffold, which seems to be more mechanically compatible than fibrin. The idea
has risen to combine the advantages of polycaprolactone and fibrin by using the first as a
mechanical backbone and the latter as a cell-delivery substance surrounding the backbone.
The mechanical properties of fibrin should still be high enough to be used as part of a scaffold
for a heart valve. Different combinations of factors leading to the optimal mechanical
properties have to be determined. Therefore, a reproducible mechanical test should be
developed. The preceding has led to the following two questions:
What is the optimal protocol for a reproducible mechanical test on fibrin gel?
What is the influence of the concentration of fibrinogen in the fibrin gel on the Youngs
modulus?
1.1 Fibrinogen
1.1.1 Structure
Following vascular injury, fibrin comprises the major protein component of the hemostatic
plug and fibrinogen is the target protein of the coagulation cascade. It can also be used as
fibrin glue during surgery. Fibrinogen is a 340-kDa soluble plasma protein consisting of
three pairs of disulfide-bonded -, - and -chains arranged as depicted in figure 1.1. The E
and D regions in each half-molecule are delineated by a pair of disulfide rings, which link
chains to , to and to [9].
Figure 1.1 Schematic structure of fibrinogen. Fibrinopeptides A and B are shown as black boxes on the
- and -chains, respectively. The disulfide bonds joining the chains are shown as lines [9].
The protofibrils may further associate laterally to produce fibres, which themselves may
associate to form fibre bundles. As also indicated in figure 1.2, the -chains of adjacent D
regions within a strand of a protofibril are covalently cross-linked by isopeptide bonds, the
formation of which is catalysed by factor XIIIa. Thus, in cross-linked fibrin, the individual
strands consist of polymers of covalently linked fibrin molecules [9].
Covalent cross-linking within fibrin networks produces dramatic effects on rheological
properties. Ligated clots exhibit mechanical stiffnesses up to five times greater than their
unligated counterparts [4].
1.2 Mechanics
Fibrin gel is a visco-elastic material, which means that it exhibits both viscous and elastic
properties. A common approach to modelling visco-elastic behaviour is by means of
combining elements representing ideal elastic behaviour and ideal viscous behaviour. The
usual method of doing this is using a spring and dashpot analogy. The spring represents ideal
elastic properties and the dashpot, ideal viscous properties. The simplest combinations are to
put the two elements in series and in parallel. This leads to the so-called Maxwell element and
the Kelvin or Voigt element. These are illustrated in figure 1.3 [10]. Different combinations
of several Maxwell and Kelvin-Voigt elements can be used to model visco-elastic materials.
Maxwell Element
Kelvin-Voigt Element
and
(1)
1.2.1 Neo-Hookean
Another way to describe the dynamic behaviour of fibrin is by using the neo-Hookean model
[11]. The Neo-Hookean constitutive equation is given by:
T = pI + GE
(2)
where T is the stress, p is the hydrostatic pressure, G is the elastic modulus in shear and E the
strain tensor.
= BI
(3)
B = F * FT
(4)
0
0 1
0
0 12
0
0
1
B = F * FT = 0 1 1/ 2
0 . 0 1 1 / 2
0 = 0 1 1 0
0
11 / 2 0
11 / 2 0
0
0
0 11
(5)
T11 = p + G12
T22 = T33 = p +
(6)
G
1
(7)
The deformation is achieved by applying a force f in x1 direction, at the ends of the sample.
The true stress acting on the ends is divided by the area of the deformed sample x2x3=a1,
so that
f1
= T11 = p + G 12
a1
(8)
Because no tractions act on the sides of the block, T22= T33 = 0 and p=G/1. Substituting this
expression in eq. 8 gives
1
f
= T11 = G ( 12 )
a1
1
(9)
or
a1 =
a1*
1
where a1* and x1* are the original area and length.
Eq. 9 can also be expressed in terms of the strain . Recalling that =1+ and substituting,
yields
3 + 3 2 + 3
)
T11 = G (
1+
(10)
T11 = 3G
for
<< 1
(11)
Figure 1.4. Tensile and compressive stress versus extension ratio for a rubber sample [11].
T11 T22
0
E = lim
(12)
which gives
E = 3G
(13)
Thus, the Youngs modulus is three times the modulus in shear, a well known result for
incompressible, isotropic materials.
1
T
B = F*F = 0
0 1
0 . 0
1
0
0
1
0
1
0 12
0=0
1
0
0
1
0
1
0
0
1
0
12
0
1
(14)
The stress components are calculated by substituting the components of B into eq. 2
T11 = p + G12
T22 = p + G
G
T33 = p + 2
1
(15)
Since there are no forces acting on the x3-surface, T33=0, p=G/21. Thus
T11 = G ( 12
1
)
12
(16)
For small strains it can be deducted that the planar tensile modulus is four times that in
shear
E = 4G
(17)
It mixes the two components completely right before they enter the mould, so the fibrinogen
starts polymerising once in the mould. All moulds were 4 cm in length, 1 cm in width and 0.5
cm in depth (figure 2.2).
Figure 2.2 The moulds used for the production of fibrin gels.
A Zwick Z010 tensile testing machine with a 20 N-sensor in series with a 10 kN-sensor was
used to do the tensile testing. The clamps used were 1 cm in width. As mentioned in the
section mechanics, pieces of fibrin with length >> width (uniaxial extension) could be used or
pieces of fibrin with width >> length (planar extension). At first, fibrin gels with width >>
length were used to do tensile testing. Then it was decided to apply uniaxial extension with
pieces of fibrin of 5 mm in width and with length >> width.
It was hypothesized that during the experiments the concentration of thrombin in the fibrin
gels was high enough to establish complete polymerisation of the fibrinogen. However, the
amount of thrombin was doubled twice to make sure the concentration was high enough for
complete polymerisation. SEM pictures were taken to get a view of the structure of different
fibrin gels. A few rheology tests were performed to compare the tensile testing results with
rheology results.
Because most concentrations were tested on more than one date, not only the reproducibility
between the fibrin gels of the different moulds could be determined, but also the
reproducibility between different testing dates.
Department of Biomedical Engineering 11
strain of 0.5 % to be the optimum strain to measure at. Other strains were applied as well. To
obtain more results the experiment was done with another sample. The rheometer produced
values for the dynamic modulus, which were multiplied by three. These tests were performed
to check whether they would give the same value for the Youngs modulus as the tensile
testing did.
3. Results
3.1 Uniaxial extension
Figure 3.1 shows the non-averaged force against strain for one sample with a fibrinogen
concentration of 18 mg/ml. The two sectioned pieces of a fibrin gel were always slightly
different in area which can be seen in the figure by the two different levels of forces. Also, the
irregularities of the curve are depicted. There was no decline in strength between the first and
the second measurement on one piece of fibrin. Differences in value occurred simply because
of a new measurement. Forces could be slightly higher as well as lower during the second
measurement.
force-strain curves
0.14
0.12
0.1
force (N)
0.08
0.06
0.04
0.02
sample
sample
sample
sample
0
-0.02
0.05
0.1
0.15
A
A
B
B
test
test
test
test
1
2
1
2
0.2
0.25
strain
Figure 3.1 Force-strain curves for all four pieces of one sample with a fibrinogen concentration of 18
mg/ml.
Figure 3.2 shows the stress against 2-1/ for the same sample. The irregularities have
become less by the averaging of the forces and strains, but are still apparent.
stress -strain curves
7000
6000
stress (N/m )
5000
4000
3000
2000
1000
sample
sample
sample
sample
0
-1000
0.1
0.2
0.3
0.4
0.5
0.6
A
A
B
B
test
test
test
test
0.7
1
2
1
2
0.8
alfa - 1/alfa
Figure 3.2 Stress-strain curves for all four pieces of one sample with a fibrinogen concentration of 18
mg/ml.
Therefore, the derivatives of these curves, which have been taken to determine the Youngs
modulus, show an enormous spreading (figure 3.3).
Young's modulus
x 10
0.5
0
-0.5
-1
-1.5
-2
sample
sample
sample
sample
-2.5
-3
0.1
0.2
0.3
0.4
0.5
0.6
A
A
B
B
test
test
test
test
1
2
1
2
0.7
0.8
alfa - 1/alfa
Figure 3.3 The Youngs modulus curves for all four pieces of one sample with a fibrinogen
concentration of 18 mg/ml.
Figure 3.4 shows the linearly fitted line through all data of this sample up to 2-1/ =0.25.
5
x 10
Young's modulus
data 1
linear
y = 4.134e+004*x + 9574
4
3
2
1
0
Y o u n g 's
m o d u lu s
(P a )
-1
-2
0.05
0.1
0.15
2
alfa - 1/alfa
0.2
0.25
x 10
Young's modulus
6
4
2
0
-2
-4
-6
-8
0.1
0.2
0.3
0.4
0.5
0.6
0.7
alfa - 1/alfa
Figure 3.5 Fitted polynomial through all data of this sample up to 2-1/ =0.7.
For all uniaxial extension tests these four above shown figures were similar.
Table 3.1 shows the calculated averaged Youngs moduli. During every experiment several
fibrin gels were tested. First the average value within one experiment was taken for every
experiment of the same concentration. Then the average of these values was taken. The
standard deviation was determined by averaging the standard deviation of all experiments
with the same concentration. The experiments with doubled thrombin concentration did not
show higher Youngs moduli. Therefore, the results have also been used to calculate the
average modulus and the standard deviation.
Table 3.1 Calculated Youngs moduli for uniaxial extension. Upper standard deviation is the averaged
standard deviation of all experiments with the same concentration. The lower is the standard deviation
of the averaged values of all experiments with the same concentration and thus a measure for the
reproducibility between experiments.
Fibrinogen
Number of
Initial Youngs modulus
Youngs modulus at 2-1/
concentration
experiments
(Pa) (mean +-SD)
=0.6 (Pa) (mean +-SD)
(mg/ml)
4
2
4722 +- 881.6 (18.7%)
10480 +- 2320 (22.1%)
+- 690.8 (14.6 %)
+- 1472 (14.0 %
8
2
5898 +- 889.8 (15.1%)
15060 +- 1041 (6.9%)
+- 276.5 (4.7 %)
+- 438.4 (2.9 %)
14
3
9584 +- 417.4 (4.4 %)
26720 +- 1399 (5.2 %)
+- 2026 (21.1 %)
n.d.
18
4
9809 +- 501.8 (5.1%)
29600 +- 932.8 (3.2%)
+- 495.8 (5.1 %)
+- 63.64 (0.2 %)
30
1
9995 +- 185.5 (1.9%)
28550 +- 1184 (4.2%)
n.d.
n.d.
Figure 3.6 and figure 3.7 depict the upper standard deviation of table 3.1.
10000
8000
6000
4000
2000
0
0
10
15
20
25
30
35
35000
30000
25000
20000
15000
10000
5000
10
15
20
25
30
35
Figure 3.7 Averaged Youngs moduli and standard deviation at at 2-1/ =0.6.
3.3 SEM
The pictures of all samples taken by the SEM showed areas with a different kind of structure,
which would suggest that the fibrin gels were inhomogeneous (figure 3.8). There was no
difference in structure seen between the samples of different concentrations. Also, some
abnormalities were found on the surface as depicted in figure 3.9. In a lot of regions the
structure shown in figure 3.10 was seen.
Figure 3.8 SEM picture (60x) of a fibrin sample with a fibrinogen concentration of 4 mg/ml.
Figure 3.9 SEM picture (506x) of a fibrin sample with a fibrinogen concentration of 4 mg/ml.
Figure 3.10 SEM picture (979x) of a fibrin sample with a fibrinogen concentration of 4 mg/ml.
3.4 Rheometer
Both samples had a Youngs modulus of about 3 kPa, with a range from 2.1 to 3.6 kPa.
Conclusions
An optimal protocol for reproducing mechanical testing on fibrin gel has been set up and is
described above. The reproducibility within an experiment and between several experiments
is good. The correlation between the fibrinogen concentration in fibrin gels and the Youngs
modulus is linear for concentrations between 4 and about 14 mg/ml showing a maximum
initial Youngs modulus of 9995 Pa and a maximum Youngs modulus at +-20 % strain of
29600 Pa. Above that, changing the fibrinogen concentration has no influence on the Youngs
modulus. The reproducibility within an experiment is higher at high fibrinogen concentrations
than at all of the lower ones. This applies for the initial Youngs modulus and the modulus at
2-1/ =0.6.
Discussion
Initially, fibrin gels with width >> length were used to do tensile testing. Unfortunately, it
appeared that gels of 1 cm width (recall that the clamps were also 1 cm in width) showed to
bulge out of the clamps once tightened and this affects the measurement by causing a lower
Youngs modulus and a higher standard deviation. Because either fibrin gels with length >>
width or with width >> length had to be used to comply with respectively uniaxial extension
or planar extension it was decided to use pieces of fibrin of 5 mm in width and with length >>
width.
Because it would have taken too long to wait for new moulds with a width of 5 mm it was
decided to section the fibrins longitudinally.
There are several causes for the deviations that are seen. When the fibrins were taken out of
the moulds sometimes they stuck to the mould, especially the fibrins with low concentration
of fibrinogen. Consequently, there were tears or variations in width. Because by dividing the
weight by the length, the averaged area was determined. The samples which had been
damaged had in fact a lower true area, because the smallest area determines the amount of
strain a certain force causes. Also, sometimes the fibrin gels had a slanting side, which also
causes a deviated area.
When sectioning the fibrin gels it was difficult to section them exactly straight. More
difficulties occurred with fibrin gels with a low fibrinogen concentration than with the ones
with a high concentration, because of their weakness. This variance in width influenced the
Youngs modulus slightly.
Sometimes it was not possible to place the fibrin pieces exactly straight in the clamps,
because for example they were a bit twisted. This probably caused shear stresses, which
lowered the calculated Youngs modulus. When tightening the clamps, the fibrin present in
between the clamps was pushed out and caused a negative force. A pre-load was applied to
try to compensate for this but the negative force is not completely caused by compression so
this pre-load is not completely correct.
The length of the sample was hard to determine. While measuring the fibrin sample it was
hard to say whether it might be compressed, extended or in its original length, especially with
the fibrin gels of low concentration fibrinogen.
Once sectioned, the samples were kept in medium till they were used for the measurement.
Two samples were once placed in medium for an hour and weighed before and afterwards to
determine any swelling or shrinking. The two samples had shrunk for about 2 % after an hour.
Therefore it was decided to regard this negligible. This was only done for a sample of 30
mg/ml, the influence on fibrin gels with other concentrations was assumed to be the same but
has not been determined.
The initial Youngs modulus, which has been calculated, is in fact not the real initial modulus
because a pre-load was applied. For the samples with a fibrinogen concentration of 14 mg/ml
and higher a strain of about 3 % was apparent at the pre-load which is quite low. For the
lower concentrations this strain was higher and it is thus less correct to call the calculated
Youngs modulus initial. The applied pre-load was the same for all samples. Better would
have been to apply the same stress for all samples thus to immediately adapt the force to the
area. But it would have been best to apply the same strain for all samples thus adapting the
force to the area and the Youngs modulus for all samples. At first, a few experiments should
be performed to estimate the Youngs modulus and then this estimate could be used in the
setting of the pre-load.
There was no difference in structure seen between the three concentrations. This may be
caused by the freeze-drying, which caused artefacts. The abnormalities seen on the surface of
some samples may have been caused by pollution.
Both samples used for the rheometer were in moderate condition. The first one had a varying
thickness. A constant thickness is a requirement for a rheometer to measure a correct dynamic
modulus. The second one had a tear, which probably influenced the measurement. Varying
the input for the area largely caused the great differences in the found values for the dynamic
modulus. This was done, because the effective area was hard to determine. A possible
explanation for the differences between the found values for the Youngs modulus with the
tensile testing machine and the rheometer is the fact that the way of loading between the two
methods is different. Fibrin gels align when stretched; when compressed there is no alignment
and if shear is then applied, the loading is different than with tensile testing.
It can be said that the protocol that has been set up is very suitable for the testing of fibrin gels
with a high fibrinogen concentration. It would be recommended to use moulds of 5 mm in
width to avoid the influence of sectioning. When testing fibrin gels with a fibrinogen
concentration of 30 mg/ml the thrombin concentration used was 5 IU/ml. It would be
interesting to see what the influence on the Youngs modulus would be when using a higher
concentration of thrombin. Also, the influence of the formation of cross-links by factor XIIIa
on the Youngs modulus would be interesting to investigate.
Acknowledgements
I would like to thank Drs. M. van Lieshout for her very pleasant coaching. She was always
willing to help me with any kind of problem. I also would like to thank Dr. Ir. G. Peters for
his very helpful insights.
References:
1. Julie R. Fuchs MD. et al, Tissue engineering, a 21st century solution to surgical
reconstruction, The annals of thoracic surgery, 72 (2), 577-591, 2001
2. Stefan Jockenhoevel. et al, Fibrin gel advantages of a new scaffold in
cardiovascular tissue engineering, Eur. j. of Cardio-Thoracic surgery, 19 (4), 424430, 2001
3. M. Benkherourou. et al, Quantification and Macroscopic Modeling of the Nonlinear
Viscoelastic Behaviour of Strained gels with Varying Fibrin concentrations, IEEE
Transactions on Biomedical Engineering, 47 (11), 2000
4. Esther A. Ryan. et al, Structural origins of fibrin clot rheology, Biophysical Journal,
77, 2813-2826, 1999
5. D. Sierra. et al, Failure characteristics of multiple-component fibrin-based adhesives,
Department of Biomedical Engineering, University of Alabama at Brimingham, 2001.
6. S. Marshall, Commercial fibrinogen, Autogenous plasma, whole blood and
cyopecipitate for coagulum pyelolithotomy: a comparative study, J. of Urology, 119 ,
1978.
7. J. Velada. et al, Reproducibility of the mechanical properties of Vivostat system
patient-derived fibrin-sealant, Biomaterials, 25 , 2002.
8. Wan. et al, Is the amount of fibrinogen in cryoprecipitate adequate for fibrin glue?
Introducing an improved recycled cryoprecipitate method, Transfusion, 29 , 1989.
9. John B. Walker. et al, The molecular weights, mass distribution, chain composition,
and structure of soluble fibrin degradation products released from a fibrin clot
perfused with plasmin, J. of biological Chemistry, 274 (8), 5201-5212, 1999
10. G. Walker, Teaching Notes, University of Teesside, UK, 2000.
11. C. Macosko, Rheology, principles, measurements and applications, VCH Pubishers,
1994.
Appendix A
deformation of fibrin till break
0.35
0.3
0.25
force (N)
0.2
0.15
0.1
0.05
0
-0.05
-0.5
0.5
1.5
strain
Figure A.1 A sample of fibrin with fibrinogen concentration of 10 mg/ml and an area of 7 *10^-6 m2.
cyclic loading
0.04
0.035
0.03
force (N)
0.025
0.02
0.015
0.01
0.005
0
-0.005
100
200
300
400
500
600
700
800
900
timestep
Figure A.2 Cyclic loading to 20 % strain of a sample of fibrin with fibrinogen concentration of 10
mg/ml and an area of 50 *10^-6 m2
Appendix B
%name: 'force'
%This m-file is to display the four curves of force against
%the strain of one sample
clear all
close all
load A.TRA;
length1=A(:,1);
strain11=(length1-length1(5,1)) /length1(5,1);
%length1 (5,1) contains the length of the sample at the pre-load
%this loop is made to keep out the irregularities seen in the very
%beginning of the testing
r=0;
l1=length(A);
for i=1:l1
strain11(i);
if strain11(i)>0.001
r=r+1;
strain1(r)=strain11(i);
force1(r)=A(i,2);
end
end
%all forces and strain data of test A are being averaged
for i=10:length(strain1)-9
strainaver1(i)=(strain1(i-9)+strain1(i-8)+strain1(i-7)
+strain1(i-6)+strain1(i-5)+strain1(i-4)+strain1(i-3)+strain1(i-2)
+strain1(i-1)+strain1(i)+strain1(i+1)+strain1(i+2)+strain1(i+3)
+strain1(i+4)+strain1(i+5)+strain1(i+6)+strain1(i+7)+strain1(i+8)
+strain1(i+9))/19;
forceaver1(i)=(force1(i-9)+force1(i-8)+force1(i-7)+force1(i-6)
+force1(i-5)+force1(i-4)+force1(i-3)+force1(i-2)+force1(i-1)
+force1(i)+force1(i+1)+force1(i+2)+force1(i+3)+force1(i+4)
+force1(i+5)+force1(i+6)+force1(i+7)+force1(i+8)+force1(i+9))/19;
end
%the same procedure is now done for the three other curves
load B.TRA;
length2=B(:,1);
strain22=(length2-length2(5,1)) /length2(5,1);
r=0;
l2=length(B);
for i=1:l2
strain22(i);
if strain22(i)>0.001
r=r+1;
strain2(r)=strain22(i);
force2(r)=B(i,2);
end
end
%all forces and strain data of test B are being averaged
for i=10:length(strain2)-9
strainaver2(i)=(strain2(i-9)+strain21(i-8)+strain2(i-7)
+strain2(i-6)+strain2(i-5)+strain2(i-4)+strain2(i-3)+strain2(i-2)
+strain2(i-1)+strain2(i)+strain2(i+1)+strain2(i+2)+strain2(i+3)
+strain2(i+4)+strain2(i+5)+strain2(i+6)+strain2(i+7)+strain2(i+8)
+strain2(i+9))/19;
forceaver2(i)=(force2(i-9)+force2(i-8)+force2(i-7)+force2(i-6)
+force2(i-5)+force2(i-4)+force2(i-3)+force2(i-2)+force2(i-1)
+force2(i)+force2(i+1)+force2(i+2)+force2(i+3)+force2(i+4)
+force2(i+5)+force2(i+6)+force2(i+7)+force2(i+8)+force2(i+9))/19;
end
load C.TRA;
length3=C(:,1);
strain33=(length3-length3(5,1)) /length3(5,1);
r=0;
l3=length(C);
for i=1:l3
strain33(i);
if strain33(i)>0.001
r=r+1;
strain3(r)=strain33(i);
force3(r)=C(i,2);
end
end
%all forces and strain data of test C are being averaged
for i=10:length(strain3)-9
strainaver3(i)=(strain3(i-9)+strain3(i-8)+strain3(i-7)
+strain3(i-6)+strain3(i-5)+strain3(i-4)+strain3(i-3)+strain3(i-2)
+strain3(i-1)+strain3(i)+strain3(i+1)+strain3(i+2)+strain3(i+3)
+strain3(i+4)+strain3(i+5)+strain3(i+6)+strain3(i+7)+strain3(i+8)
+strain3(i+9))/19;
forceaver3(i)=(force3(i-9)+force3(i-8)+force3(i-7)+force3(i-6)
+force3(i-5)+force3(i-4)+force3(i-3)+force3(i-2)+force3(i-1)
+force3(i)+force3(i+1)+force3(i+2)+force3(i+3)+force3(i+4)
+force3(i+5)+force3(i+6)+force3(i+7)+force3(i+8)+force3(i+9))/19;
end
load D.TRA;
length4=D(:,1);
strain44=(length4-length4(5,1)) /length4(5,1);
r=0;
l4=length(D);
for i=1:l4
strain44(i);
if strain44(i)>0.001
r=r+1;
strain4(r)=strain44(i);
force4(r)=D(i,2);
end
end
%all forces and strain data of test D are being averaged
for i=10:length(strain4)-9
strainaver4(i)=(strain4(i-9)+strain4(i-8)+strain4(i-7)
+strain4(i-6)+strain4(i-5)+strain4(i-4)+strain4(i-3)+strain4(i-2)
+strain4(i-1)+strain4(i)+strain4(i+1)+strain4(i+2)+strain4(i+3)
+strain4(i+4)+strain4(i+5)+strain4(i+6)+strain4(i+7)+strain4(i+8)
+strain4(i+9))/19;
forceaver4(i)=(force4(i-9)+force4(i-8)+force4(i-7)+force4(i-6)
+force4(i-5)+force4(i-4)+force4(i-3)+force4(i-2)+force4(i-1)
+force4(i)+force4(i+1)+force4(i+2)+force4(i+3)+force4(i+4)
+force4(i+5)+force4(i+6)+force4(i+7)+force4(i+8)+force4(i+9))/19;
end
plot(strainaver1,forceaver1,'y',strainaver2,forceaver2,'m'
,strainaver3,forceaver3,'b',strainaver4,forceaver4,'r')
Appendix C
%name: 'E-modulus'
%This m-file calculates the stress and E-moduli for uniaxial
%extension using the columns generated in the m-file 'force'.
%if planar extension is applied all 'xast'-columns have to be
%changed in 'xasv'-columns. The constant a has to be changed in the value 4
%extension
alfa1(r)=1+strain1(r);
alfa2(r)=1+strain2(r);
alfa3(r)=1+strain3(r);
alfa4(r)=1+strain4(r);
%For uniaxial extension alfa^2 - 1/alfa ('xast') has to be determined and
%for planar extension alfa^2 - 1/alfa^2 ('xasv') has to be determined
for r=1:length(strainaver1)
xast1(r)=(alfa1(r))^2-(1/alfa1(r));
xasv1(r)=(alfa1(r))^2-(1/((alfa1(r))^2));
end
for r=1:length(strainaver2)
xast2(r)=(alfa2(r))^2-(1/alfa2(r));
xasv2(r)=(alfa2(r))^2-(1/((alfa2(r))^2));
end
for r=1:length(strainaver3)
xast3(r)=(alfa3(r))^2-(1/alfa3(r));
xasv3(r)=(alfa3(r))^2-(1/((alfa3(r))^2));
end
for r=1:length(strainaver4)
xast4(r)=(alfa4(r))^2-(1/alfa4(r));
xasv4(r)=(alfa4(r))^2-(1/((alfa4(r))^2));
end
%the constants for the area of the two samples in m^2
areaA=1.897*10^-5;
areaB=2.97*10^-5;
a=3; % constant that calculates E by multiplying G with a
l2=length(strainaver2);
for t=1:l2
stress2(t)=forceaver2(t)*((1+strainaver2(t)))/areaA;
end
clear t
for t=1:(l2-1)
E2(t)=a*(stress2(t+1)-stress2(t))/(xast2(t+1)-xast2(t));
end
clear t
l3=length(strainaver3);
for t=1:l3
stress3(t)=forceaver3(t)*((1+strainaver3(t)))/areaB;
end
clear t
for t=1:(l3-1)
E3(t)=a*(stress3(t+1)-stress3(t))/(xast3(t+1)-xast3(t));
end
clear t
l4=length(strainaver4);
for t=1:l4
stress4(t)=forceaver4(t)*((1+strainaver4(t)))/areaB;
end
clear t
for t=1:(l4-1)
E4(t)=a*(stress4(t+1)-stress4(t))/(xast4(t+1)-xast4(t));
end
%plotting of stress
plot(xast1,stress1,'y',xast2,stress2,'m',xast3,stress3
,'b',xast4,stress4,'r')
xlabel('alfa^2 - 1/alfa')
title('stress (N/m^2)')
pause
%plotting of Young's-moduli
plot(xast1,E1(1:l1-1),'y',xast2,E2(1:l2-1),'m',xast3,E3(1:l3-1)
,'b',xast4,E4(1:l4),'r')
xlabel('alfa^2 - 1/alfa')
ylabel('Youngs-modulus')
pause
%taking all data together
clear r
clear t
b=25; %constants are less when less data are present in file than 2500
c=25;
d=25;
e=25;
f=0;
for i= b:l1
if xast1(i)<0.25 %when determining the strain at alfa^2 - 1/alfa = 0.6
%then 0.25 turns into 0.7
f=f+1;
end
end
g=0;
for i= c:l3
if xast2(i)<0.25
g=g+1;
end
end
h=0;
for i= d:l3
if xast3(i)<0.25
h=h+1;
end
end
j=0;
for i= b:l4
if xast4(i)<0.25
j=j+1;
end
end