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Unit4 Enzymes
Unit4 Enzymes
Enzyme technology broadly involves production, isolation, purification and use of enzyme for the
ultimate benefit of humankind. The first enzyme produced industrial was takadiastase (a fungal
analyse) in 1896, in united states. It was as a pharamaceutical agent to cure digestive disorders.
Commercial enzymes can be produced from a wide range of biological sources. At
present, a great majority (80%) of them are microbial sources. The different organisms and their
relative contribution for the production of commercial enzymes are given below
Fungi – 60%
Bacteria – 24%
Yeast – 4%
Streptomyces – 2%
Higher animals – 6%
Higher plants – 4%
Enzymes from animal and plant sources
In the early days, animal and plat sources largely contributed to enzymes. Even now for
certain enzymes they are the major sources.
A selected list of plant ( Table 1) and animal (Table 2) enzymes with their sources aqnd
applications are given.
Table 1. Commercially produced enzymes from plant sources their applications.
Table 2
Commercially produced enzymes from animal sources and their applications
Enzymes Sources Applications
Amylase, esterase Lamb,calf Digestive aids
Pepsin, trypsin Bovine Preparation of cheese
Lipase, rennin Poreine
(chymosin),phospholipase, phytase
Lysozme Hen eggs Cell wall breakage in bacteria
Human urine Urokinase For dissolution of blood clots
Animal organs and tissues are very good sources foe enzymes such as lipases, esterase
and proteases. The enzyme lysozyme is mostly obtained from hen eggs. Some plants excellent
sources for certain enzymes-papain (papaya), bromelain (pincapple).
Limitation
There are several dracobacks associated with the manufacture of enzymes fraom animal
and plant sources. The quantities are limited and there is a wide variation in their distribution.
The most important limitations are the difficulties in isolating, purifying the enzume and the cost
factor. For these reasons microbial production of enzymes is preferred.
Extra cellular enzyme purification is easy from the broth. The recovery of intracellular enzyme is
more complicated and involves the disruption of cells and removal of cell debris and nucleic
acids. In some cases, enzyme may be both intracellular and extracellular, which requires
processing of both broth and cells. Intracellular enzymes may be released to medium by
increasing the permeability of cell membranes.
SOLID SHEAR
Grinding with glass beads
The cells mixed with glass beads are subjected to a very high speed in a reaction vessel.
The cells break as they are forced against the wall of the vessel by the beads. Several factors
influence the cell breakage size and quantity of the glass beads. Concentration and age of cells,
temperature and age of cells, temperature and agitator speed. Under optical conditions, one can
expect a maximal breakage of about 80% of the cells.
A diagrammatic representation of a cell disrupter employing glass bead is shown in figure 3.
It contains a cylindrical body with an inlet, outlet and central motor – driven shaft. To
this shaft are fitted radial agitators. The cylinders are fitted with glass beads. The cells
suspension is added through the inlet and the disrupted cells come out through the outlet. The
body of the cell disrupter is kept cool while the operation is on. Eg. Dyno – mill, Ball mill,
French press, etc.
Osmotic Shock:
Osmotic shock and rupture with ice crystals are commonly used methods. By slowly
freezing and then thawing a cell paste, the cell wall and membrane may be broken, releasing
enzymes into the media. Changes in osmotic pressure of the medium may result in the release of
certain enzymes, particularly periplasmic proteins in gram – negative cells.
Heat Shock:
Breakage of cells by subjecting them to heat is relatively easy and cheap. But this
technique can be used only for a very few heat – stable intracellular products.
CHEMICAL METHODS:
Treatment with alkalies, organic solvents and detergents can lyse the cells to release the
contents.
ALKALIES:
Alkalie treatment has been used for the extraction of some bacterial proteins. However,
the alkali stability of the desired product is very crucial for the success of this method, e.g.
recombinant growth hormone can be efficiently released from E.Coli by treatment with sodium
hydroxide at pH 11.
ORGANIC SOLVENTS:
Several water miscible organic solvents can be used to disrupt the cells. Eg. Methanol,
ethanol, isopropanol, butanol. The organic solvent toluene is frequently used. It is believed that
toluene dissolves membrane phospholipids and creates membrane pores for release of
intracellular contents.
Detergents:
Detergents that are ionic in nature, cationic – cetyl trimethyl ammonium bromide or
aninonic – sodium lauryl sulfate can denature membrane proteins and lyse the cells.
Non – ionic detergents Triton X – low or Tween are also used some extent.
Cell disruption by enzymatic methods has ceratin advantages i.e. lysis of cells occurs
under mild conditions in a selective manner. This is quire advantageous for product recovery.
Lysozyme is the most frequently used enzyme and is commercially available (produced from hen
egg white). It hydrolyses β - 1, 4 – glycosidic bonds of the mucopeptide inbacterial cell
walls. The Gram – positive bacteria (with high content of cell wall mucopeptides) are more
susceptible for the action of lysozyme.
For Gram – negative bacteria, lysozyme in association with EDTA can break the cells. As
the cell wall gets digested by lysozyme, the osmotic effects break the periplasmic membrane to
release the intracellular contents.
Certain other enzymes are also used, although less frequently for cell disruption. For the
lysis of yeast cell walls, glucanase and mannanase in combination with proteases are used.
CENTRIFUGATION:
The technique of centrifugation is based on the principle of density differences between
the particles to be separated and the medium. Thus centrifugation is mostly used for separating
solid particles from liquid phase.
The different types of centrifuges are depicted in fig.6. and briefly described Lereunder.
Tubular bowl centrifuge: (Fig 6.a.)
This is a simple and a small centrifuge, commonly used in pilot plants. Tubular bowl
centrifuge can be operated at a high centrifugal speed and can be run in both batch or continuous
mode. The solids are removed manually.
Disc Centrifuge: (Fig. 6.b.)
It consists of several discs that separate the bowl into settling zones. The feed slurry is
fed through a central tube, the clarified fluid moves upwards while the solids settle at the lower
surface.
Multi chamber Centrifuge:
This is basically a modification of tubular bowl type of centrifuge. It consists of several
chambers connected in such a way that the feed flows in a zig – zag fashion. There is a variation
in the centrifugal fore in different chambers. The force is much higher in the periphery chambers,
as a results smallest particles settle down in the outer most chamber.
Concentration:
The filtrate that is free from suspended paticles (Cells, cell debris, etc) usually contains
80 – 98% of water. The desired product is a very minor constituent. The water has to be removed
to achieve the product concentration. The commonly used techniques for concentrating biological
products are evaporation, liquid – liquid extraction, membrane filtration, precipitation and
adsorption. The actual product adopted on the nature of desired product (quality and quantity to
be retained as far as possible) and the cost factor.
Evaporation:
Water in the broth filtrate can be removed by a simple evaporation process. The
evaporators in general have a heating device for supply of steam and unit for the separation of
concentrated product and vapour, a condenser for condensing vapour, accessories and control
equipment. The capacity of the equipment is variable that may range from small laboratory scale
to industrial scale. Some of the important types of evaporators in common uses are as follows:
Eg. Plate evaporators, falling film evaporators, forced film evaporators, centrifugal forced film
evaporators.
LIQUID – LIQUID EXTRACTION:
The concentration of biological products can be achieved by transferring the desired
product (solute) from one liquid phase to another liquid phase, a phenomenon referred to liquid –
liquid extraction. Besides concentration, this technique is also useful for partial purification of a
product. The efficiency of extraction is dependent on the partition coefficient i.e. the relative
distribution of a substance between the two liquid phases.
The process of liquid – liquid extraction may be broadly categorized as ‘extraction of low
molecular – weight products’ and extraction of ‘high molecular weight products’.
EXTRACTION OF LOW MOLECULAR WEIGHT PRODUCTS:
By using organic solvents, the lipophilic compounds can be conveniently extracted.
EXTRACTION OF HIGH MOLECULAR WEIGHT PRODUCTS:
Proteins are the most predominant high molecular weight products produced in
fermentations industries. Organic solvents cannot be used for protein extraction, as they lose
their biological activities. They are extracted by using an aqueous two – phase systems.
Aqueous two – phase systems (ATPs):
They can be prepared by mixing a polymer (e.g. polyethyle glycol) and a salt solution
(ammonium sulphate) or two different polymers. Water is the main component in ATPs, but the
two phases are not miscible.
Cells and other solids remain in one phase while the proteins are transferred to other
phase. The distribution of the desired product is based on its surface and ionic character and the
nature of phases. The separation takes much longer time by ATPs.
PRECIPITATION:
Precipitation is the most commonly used technique in industry for the concentration of
macromolecules such as proteins and polysaccharides. Further, precipitation technique can also
be employed for the removal of creation unwanted by products, e.g. nuclei acids, pigments,
neutral salts, organic solvents, high molecular weight polymers (ionic or non – ionic), besides
alteration in temperature and pH are used in precipitation.
Isoelectric point:
Enzymes and other proteins are highly charged molecules and can be precipitated with
appropriate change neutralizing chemicals. Once their changes are broken they form aggregates
and settle down as precipitate. When an acid or base is added, the enzyme protein can be brought
to its isoelectric pH. At this pH, there is no net charge on enzyme molecules and electrostatic
repulsion between them is low so that they tend to aggregate. Therefore adjusting the pH to the
isoelectric point of a protein causes its precipitation.
Salting Out:
‘Salting Out’ of proteins is achieved by increasing the ionic strength of a protein
containing solution by adding salts such as (NH4)2SO4 or Na2SO4. The added ions interact with
water more strongly, causing protein molecules to precipitate. The solubility of proteins in a
solution as a function of the ionic strength of the solution is given by,
log (S/S0) = – K'S (I)
Where, S – Solubility of protein in solution (g/l)
S0 – Solubility of protein when Z = 0, Z – ionic strength of solution
K'S – Salting – out constant, which is a function of temperature and pH.
Organic solvents:
Ethanol, acetone and propanol are the commonly used organic solvents for protein
precipitation.
Organic solvents addition at low temperature (T< - 5°C) cause the precipitation of
proteins by the reducing the dielectric constant of the solution. Thesolubility of protein as a
function of the dielectric constant of a solution is given by
log (S/S0) = – K' /DS2
Where, DS is the dielectric constant of a solution results in stronger electrostatic forces between
the protein molecules and facilitates protein precipitation. The addition of solvents reduces
protein – water molecule interactions and therefore decreases protein solubility.
NON – IONIC POLYMERS: Polyethylene glycol (PEG) is a high molecular weight non – ionic
polymer that can precipitate proteins. It reduces the quantity of water available for protein
salvation and precipitates proteins.
IONIC POLYMERS: The charged polymers such as polyacrylic acid and polyethyleneimine are
used. They form complexes with oppositely charged protein molecules that causes charge
neutralization and precipitation.
Increases in temperature:
The heat sensitive proteins can be precipitated by increasing the temperatures.
PRECIPITATION BY LIGANDS:
Ligands with specific binding sites for proteins have been successfully used for selective
precipitation.
FURTHER PURIFICATION PROCEDURE:
Further purification of enzymes after extracting the crude enzyme extract by the above
methods, involves Dialysis, Chromotography and electrophoresis.
Dialysis:
Dialysis is the process that is used to remove small molecules from enzyme. For this
enzyme precipitate obtained in previous step is dissolved in a small quantity of buffer solution in
which the enzyme was originally extracted.
The solution can be taken in a dialysis bag (may be a semi permeable membrane such as
a cellulose membrane with pores). The bag is suspened in either distilled water of a buffer of
known molarity and ionic composition. Some other salts or chemical smay have to be added
sometimes in the outer solution to prevent the loss of enzyme activity during dialysis (Fig. 7.).
Molecules having dimensions significantly greater than the pore diameter are retained
inside the dialysis bag, whereas smaller molecules and ions traverse the pores of such a
membrane and emerge in the dialysate outside the bag.
CHROMATOGRAPHY:
Chromatographic separation of proteins is the most common method of enzyme
purification.
It is basically an analytical technique dealing with the separation of closely related
compounds from a mixture. Chromatography usually consists of a ‘stationary phase’ and ‘mobile
phase’. The stationary phase is the porous solid matrix packed in a column onto which the
mixture of compounds to be separated is loaded? The compounds are elated by a mobile phase.
The eluate from the column can be monitored continuously (E.g. protein elution can be monitored
by ultraviolet adsorption at 280 nm and collected in fractions of definite volumes.
The different types of chromatography techniques used for separation (mainly proteins)
along with, the principles are given in Table.1.
Table 1: Chromatographic techniques along with the principles for separation of proteins
Chromatography Principle
Gel – filtration (size exclusion) Size and Shape
Ion – exchange Net charge
Affinity Biological affinity and molecular recognition
A large number of matrices are commercially available for purification of proteins e.g.
agarose, cellulose, polyacrylaminde, porous silica,m cross – linked dextan polystryrene. Some of
the important features of selected Cheomalographic techniques are briefly described.
AFFINITY CHROMATOGRAPHY:
In this method, enzymes are purified according to their speficicity for a particular
substrate or cofactor.Affinity chromatography is based on the highly specific interaction between
solute molecules and ligands attached on polymeric or ceramic beads in a packed column.
The concept of affinity chromatography is described in Fig.10.
The matrix is usually agarrose. However pollyaisylamide, hydroxyethyl methaerylate,
cellulose and porous glass can also be used as the matrix bead. Spacer arms between the matrix
and ligand are usually llnear aliphatic hydrocarbons. The use of space arms between the matrix
and ligand may reduce the steric hindrance generated by the matrix.
Coupling between the matrix and ligand depends on the functional groups present on the matrix
and ligand. Chemically reactive groups on the support matrix usually are – OH, - NH2 or –
COOH groups. If the reactive group on the matrix is an – OH group (polysaccharides, glass
hydrooxyalkyl methacrylate), then cyanogens bromide (CnBr) is used as a coupling agent. The
cyanogens bromide – activated agarose reacts with primary amine groups present in proteins that
act as ligands.
After the desired solutes are fbound to theligand, elution is achieved by changing the pH or ionic
strength in the column. Ligand – solute molecule interaction in affinity chromatography are very
specifi. That is an enzyme inhibitor or substare may be used as a lighand in separating specific
enzyme from a mixture.
ELECTROPHORESIS:
Electroporesi is a technique in which enzyme molecules are separated by difference in
their net charge in the presence of an externally applied electric field. This technique is routinely
used in enzyme purification and isozyme separation in the laboratories, although it has found only
limited application at large scale. Since the technique is time consuming and is a bit expensive.
Various types of instrumental approaches have been used to separate and purity charged
molecules using electrophoresis. However, the most common method for purifying enzymes is
though electrophoresis on polyacrylamide gel. Polycrylamide is a polymer of acrylamide and
methylene bisacarylamide and when prepared as a gel it is transparent, thermostable, non – ionic
and extremely regular in structure.
The gel may be taken either in the form of a column or a slab, although the later is
preferred over the former (F.g 11). The protein mixture is loaded in the gel and the components
are separated under a direct current of constant voltage. The migration rate of various components
of the mixture is dependent upon their charge and molecular weight.
Sodium doderyl sulphate polyacrylamide gel electrophoresis (ADS – PAGE):
This form of polyacrylamide gel electrophoresis is the most widely used method for
analyzing protein mixtures qualitatively. It is particularly useful for monitoring protein
purification and because the method is based on the separation of proteins according to size, the
method can also be used to determine the relative molecular mass of proteins.
SDS, (CH3 – (CH2)10 – CH2OSO3– Na+) is an anionic detergent, samples to be run on SDS
– PAGE are firstly boiled for 5 min in sample buffer containing β - mereaptoethanol and SDS.
The mercaptoethanol reduces any disulphide bridges present that are holding together the protein
tertiary structure and the SDS binds strongly to and denatures the protein. Each protein in the
mixture is therefore fully denatured by this treatment and opens up into a red – shaped structure
with x series of negatively charged as molecules along the polypeptide chain.
Once the samples are loaded a current is passed through the gel. The negatively charted
protein – SDS complexes now continue to move towards the anode and because they have the
same charge per unit length, they travel into the separating gel under the applied electric field
with the same mobility. However, as they pass through the separating gel the proteins separate,
owing to the molecular siwving properties of the gel. Quite simply, the smaller the protein the
more easily it can pass through the pores of the gel, whereas large proteins are successively
retarded by frictional resistance due to the sieving effect of the gels.
The sample buffer also contains an ionisable tracting due, usually bromophenol blue, that
allows the electrophoretic run to be monitored. When the dyue reaches to bottom of the gel, the
current is turned off and the gel is removed from between the glass plates andn shjaken in an
appropriate stain solution (usually Coomassie Brilliant Blue) for a few hours and then washed in
destain solution overnight. The destain solution removes unbound background due from the gel
leaving stained proteins visible as blue bands on a clear background.
FREEZE DRYING:
Freeze drying or lylophilization is the most preferred method for dying and formulation
of an enzyme. This is mainly because freeze – drying usually does not cause loss of biological
activity of the enzyme.
Lyophilization is based on the principle of sublimation of a liquid from a frozen state. In
the actual techniques the liquid containing the product in frozen and then dried in a freeze – dryer
under vacuum. The vacuum can now be released and the product containing vials can be sealed.
The dried enzyme can be packed and marketed. For certain enzymes, stability can be
achieved by keeping them in ammonium sulphate suspensions.
All the enzymes used in foods or medical treatments must be of high grade purity and
must meet the required specifications by the regulatory bodies. These enzymes should be totally
free from toxic materials, harmful micro organisms and should not cause allergic reactions.
A) Differential Centrifugation
The simplest and most cuidely used method for separating the various sub-cellular organelles
from each other is different centrifugation.
A tissue homogenate is prepared in a medium of low density (e.g. 0.25 M sucrose) and
centrifuged in a series of stages, the centrifugal field of each step being higher than for the
previous one. At the end of each stage the sedimented pellet, consisting of particles of similar
sedimentation characteristics is removed. (fig .1)
A simplified scheme for the fractionation a rat liver homogenate is shown in fig. 2
Liver homogenate
Supernatant
Supernatant
Pellet
miltochondrialysosomes Centrifuge 100,000 g, 90
minutes
Pellet supernatant
Microsomes Free ribosomes
enzymes of cytosol
Fig 2. Simplified scheme for the fractionation by differential centrifugation of a 10% rat liver
homogenate in 0.25M sucrose at 0° C. Note that microsomes are not organelles but particles
produced during homogenization. Largely from endoplasmic reticulam, and consisting a specific
sedimentation fraction.
B) DENSITY-GRADIENT CENTRIFUGATION
Centrifugation techniques where the density of the suspending medium is not uniform
throughout. There are two methods of density gradient centrifugation, the rate zonal technique
and the isopycnic (isodensity or equal density) technique, and both can be used when the
quantitative seperation ofall the components of a mixture of particle is required.
RATE ZONAL CENTRIFUGATION
Particle seperation by the rate zonal technique is based upon differences in size, shape
and density of the particles, the density and viscosity of the medium and the applied centrifugal
field. (fig.3)
Seperation of similar types of similar types of particles by the rate, zonal technique is
based mainly upon differences in their size. Subcellular organelles, therefore, such as
mitochondria, lysosomes and peroxisomes, whoch have different densities but are similar in size,
do not separate efficiently using this method.
The technique involves carefully layering a sample solution on top of a preformed liquid
density gradient, the highest density of which does not exceed that of the densest particles to be
separated.
The sample is then centrifuged, until the desired degree of seperation is effected, i.e. for
sufficient time for the particles to travel through the gradient to form discrete zones or bonds
(fig.3) which are spaced according to the relativevelocities of the particles.
ISOPYNIC CENTRIFUGATION
Isopynic centrifugation depends solely upon the density of the particle and not its shape
or size and is independent of time, the size of the particle affecting only the rate at which it
reaches it s isopycnic position in the gradient.
The technique is used to separate particles of similar size but of differing density.
The subcellular organelles such as Gol;gi apparatus, mitochondria, and peroxisomes can be
effectively separated.The sample is initially mixed with the gradient medium to give a solution of
uniform density, the gradient self-forming, by sedimentation equilibrium, during centrifugation.
(fig.4).
CHARACTERIZATION OF ENZYMES
Molecular Weight Determination of an Enzymes
The information regarding the complete three-dimensional structure of an enzyme at
atomic or near atomic resolution provides a basis for understanding the properties of the enzyme,
especially its catalystic activity. The determination of this detailed strucure is a daunting task for
even the smallest enzyme and has been found to require several years of work. Assuming that a
supply of purified enzyme is available, the primary stage of the work is the determination of
relative molecule lass Mr.
The term relative molecular mass (Mr) is now used in place of molecular weight. Mr is a
dimensionless number and is the ratio of the molecular mass of a molecule to 1/12 the mass of
one atom of 12C. The latter value is known as a Dalton. Molecular masses are often quoted in
Daltons or kilodaltons.
The determination of Mr.
Enzymes are macromolecules with Mr values ranging from about 10,000 to several
million. Therefore methods for determining Mr such as mass spectrometry or freezing point
depression which are applicable to small molecules are not suitable for enzymes. The majority of
present-day determinations of Mr values of enzymes are performed by use of one or more of the
following techniques,
1. Gel filteration
2. Ultracentrifugation
3. Sodium dodecyl sulphate poly acrylamide gel electrophoresis (SDS-PAGE).
4. GEL FILTERATION
Which separate molecules on the basis of size provides one way of doing this. A packed column
is calibrated by applying proteins of known molecular weight to the top of the column and
determining the volume of buffer required for the elution of each protein; as each protein leaves
the column there should be an absorbance peak at 280nm in the column eluate, thus providing a
simple way of monitoring the elution.
From the data obtained, a graph may be drawn of elution volume against molecular
weight. The protein of unknown molecular weight is then passed through the column and its
elution volume determined exactly as for the marker proteins. Hence, by reference to the
calibration graph, the molecular weight of the protein may be estimated.
ULTRA CENTRIFUGATION
This technique is also widely used for the determination of molecular weights of proteins.
In this, the ultracentrifuge is operated at high speeds to generate centrifugal forces that are
sufficiently intense to sediment the macromolecules. The sedimentation of an enzyme can be
monitored by suitable optical means, and from the measurements the sedimentation coefficient
‘S’ can be calculated.
The sedimentation coefficient cannot by itself be used to calculate the Mr of the enzyme,
since the rate of sedimentation will depend on other factors such as the shpe of the
macromolecule. However, if we have other information, such as the value of the diffusion
coefficient (D) of the macromolecule, its partial specific volume (v) and the density of the
solution (ρ), the Mr can be calculated from the formula,
This is known as the Svedberg equation.
Where, R – gas constant, T – absolute temperature and D – diffusion constant of the molecule.
RTS
Mr =
D(1 – ύρ)
Since the charge and hydrodynamie properties of the protein – SDS complex are both simple
functions of the Mr, the mobility of electrophoresis is a function of Mr alone. The larger
molecules have lower mobilities means that the hydrodynamic effects (i.e., sieving) predominate
over the charge effects.
Relative Mobility →
1.0 –
0.5 –
A graph of the logarithm of the unknown protein can be determined by reference to the
standard line. Different ranges of Mr can be examined by the use of gels of different
polyacrylamide concentration or by the use of gradienet gels.
0.0 – | | |
4.0 4.5 5.0
Uses of Mr information: log (Mr) →
The Mr of an enzyme is a fundamental piece of information because it cane be used in a
variety of ways such as in consideration of composition, catalytic activity and ligand binding.
Measurements of Mr made in the absence of presence of denaturing agents will show whether or
not the enzyme is composed of subunits and may indicate the number of such subunits.
These are currently two main types of enzyme – Immunoassay (EIA), they are
Primary Reaction:
• The antigen (Ab) of interest is immobilized on the surface of a test tube, petriplate or
micro titter well.
• Now, Antibody (Ag) specific to the Ag (Ab) is added and allowed to react with the
absorbed antigen. Unreacted molecules of the Ab(Ag) are washed away, leaving only the
Ag- Ab complex.
Secondary Reaction:
In the secondary reaction on anti – immunoglobulin (anti – Ig: an antibody that reacts
with the antibody0 is added into the vessel and allowed to react with the Ag – Ab complex
already formed; the anti – Ig binds to the antibody component of the Ag – Ab complex.
The anti – Ig is linked to an appropriate enzyme molecule (i.e. labeled with an enxyme
molecule) in such a way that its anti – Ig activity is not impaired (eg. Alkaline phosphatase,
horseradish peroxidase and β - galactosidase).
An enzyme conjugated with an antibody reacted with a colourless substrate to generate a
coloured reaction product. This substrate are known as chromogenic substrates.
The unreacted anti – Ig is washed away and finally substrate of the enzyme is added
alongwith the necessary reagents to develop colour due to the enzyme activity.
The intensity of colour is proportional to the enzyme concentration; therefore colour
intensity is used to determine the quantity of antigen or antibody or simply to detect their
presence. The sensitivity of ELISA isin the range of nanograms (10-4g)/ml.
For an easy and rapid assay a computerized ELISA reader may be used.
DIRECT ELISA:
Antigen can be detected or quantititated by a sandwich or direct ELSIA.
In this technique, the primary antibody (Ab1) is immobilized on a microtiter well.
A sample containing antigen is added and allowed to react with the bound antibody. After
any free Ag is washed away, the presence of antigen bound to the antibody is detected by added
an enzyme – conjugated antibody specific for a different epitope on the antigen is added and
allowed to react with the bound antigen.
Any free Ab2 then is washed away and a substrate for the enzyme is added. The coloured
reaction product that foams is measured by specialized spectrophotometric plate readers, which
can measure the absorbance of a 90 – Well plate in less than a minute.
INDIRECT ELISA:
Antibody can be detected or quanititated with an indirect ELISA.
Serum or some other sample containing primary antibody (Ab1) is added to an antigen
coated microtiter well and allowed to react with the antigen attached to the well. After any free
Ab1 is washed away the presence of antibody bound to the antigen is detected by added an
enzyme – conjugated secondary anti – isotype antibody (Ab2), which binds to the primary
antibody. Afy free Ab2 is washed away and a substrate for the enzyme is added. The amount of
colored reaction product that forms is measured.
ENZYME MULTIPLIED IMUNOASSAY TECHNIQUE (EMIT):
This is a homogeneous procedure, since no separation of components is required. As with
some types of ELISA, an enzyme is attached to a specimen of antigen to act as a label. However,
in contrast to ELISA, the subsequent binding of the enzyme – labeled antigen to the antibody
results in a significant change in activity of the enzyme in most types of EMIT procedure,
enzyme activity is lost completely on binding to the antibody either as a result of steric lindranace
or conformational changes. In such an assay, specified amounts of antibody and enzyme – labeled
antigen are mixed with the sample. The antigen in the sample (Ag) then competes with the
enzyme – labeled antigen (E. Ag) for the available antibody (Ab) according to the following
reactions:
Ag + Ab Ag. Ab
E.Ag + Ab E'.Ag.Ab
The enzyme – antigen – antibody complex formed (E'.Ag.ab) has no catalytic activity, so
the total activity present is contributed by E.Ag. Hence the antigen content of the sample may be
calculated from the total enzyme activity at equilibrium; the more antigen there is in the sample,
the less E.Ag is able to bind to the antibody, so the greater will be the total enzyme activity.
EMIT has so far been used principally for the determination of relatively small (io.e. non
– protein) molecules, e.g. barbiturates. The enzymes which have been involved include lysozyme
and malate dehyrogenase.
PRINCIPLE:
The principle of RIA involves competitive binding of radio labeled antigen and
unlabelled antigen to a high affinity antibody.
The antigen is generally labeled with a gamma – emitting isotope such as 125I. The
labeled antigen is mixed with antibody at a concentration just saturates the antigen – binding sites
of the antibody molecule and then increasing amounts of unlabelled antigen of unknown
concentration are added.
The antibody does not distinguish labeled from unlabelled antigen and of the two kinds of
antigen compete for available binding sites on the antibody.
With increasing concentration of unlabelled antigen, more labeled antigenwill be
displaced form the binding sites.
4Ag* + 4 Ab 4Ag*Ab
4Ag + 4Ag* + 4 Ab 2Ag*Ab + 2Ag Ab + 2Ag* + 2 Ag
12Ag + 4 Ag* + 4Ab Ag*Ab + 3 Ag Ab + 3 Ag*+ 9 Ag
A standard curve has been plotted between bound labeled antigen (%) and known concentrations
of unlabeled antigen added.
Once a standard curve had been plotted unknown concentrations of the unlabeled antigen
can be determined from the standard curve.
Antibodies for the RIA of enzymes may be prepared in the form of antisera by
immunizing rabbits with the required enzyme; for example, the blood of a rabbit immunized in
the foot pad with human pancreatic α - amylase contains sufficient antibodies within a few
weeks to be useable as an antiserum.
The part of the enzyme which binds to the antibody is likely to be quite distinct from the
active site, so RIA and catalytic assay of enzymes can give different information. Catalytically
inactive forms of enzymes (eg. Prienzymes) may be detected by RIA if they contain the structural
part which is recognized by the antibody. On the other hand, QRIA procedure is likely to be
specific for one particular isoenzyme (that used to produce the antibody). Hence, it can be seen
that catalytic assay and RIA procedures are not alternat6ives but can be used to complement each
other RIAs also have the advantage of being particularly sensitive (upto a thousand times more
sensitive than catalytic assays).
ENZYME ASSAYS
An assay is a measurement of a given enzyme of known characteristics in a sample. Ideally, this
means measuring a specific and characteristics biological property (or ability to catalyze a
chemical reaction) of the desired enzymes. Less ideally, we use a method, which does not in
principle, derive from the biological activity of the protein, but is a general method in which it
has a specific behaviour. Thus enzyme assay may be
(1). The former, catalytic assay and
(2). The later, stoichiometric assay
A catalytic assay is obviously more sensitive than a stoichiometric assay, which measures
amount of the enzyme by measuring a molar equivalent amount of something, such as bound
Coomassie Blue or silver stain. In a catalytic assay the amount of measured product, at least in
principle, increases indefinitely with time of incubation, yielding a greater sensitivity while a
stoichiometric assay only reaches equilibrium.
Note: Enzyme activity is measured as the amount of substate lost (or product gained) per unit
time, and it should also be specimen used for assay. In 1961, the enzyme commission of the IUB
defined an ‘Enzyme Unit’ (U), later to be known as an International Unit (IT), as the amount of
enzyme causing loss of 1μmol substrate per minute under specified conditions. Later, in 1973, the
commission of Biochemical Nomenclature introduced the Katal (Kat) as the system International
(SI) units of enzyme activity; this is defined as the amount of enzyme causing loss of 1 mol
substrate per second under specified conditions. Both units are in current usage.
For a successful assay system, the reaction being catalyzed should be capable of being
accurately monitored. That is, during reaction there should be change in optical, electrical or
other properties that is directly proportional to the product formed or substrate utilized. The
product formed/substrate utilized can be directly monitored (either by stop and sample method or
by continuous method) or any of the following method. If product or substrate is not having any
detectable trait, it may be possible to study the course of reaction indirectly by coupling it to
another detectable reaction.
Mg2+
D-glucose + ATP ------------------→ D-glucose-6-phosphate + ADP
Hexxokinase
For example, the product in this reaction (D-Glu-6-P) is not easily assayable because
there is no spectrophometric absorbtion for this compound. But if this rection is coupled to the
production of D-glucono δ -lactone 6-phosphate by the reduction of NADP + to NADPH using
glucose-6phosphate dehydrogenase enzyme. The amount of NADPH can be monitored easilyas it
has an absorption spectrum at 340nm, whereas NADP+ is not having. Thus D-glucose 6-
Phosphate can be indirectly measured in a couple assay.
D-glucose + ATP D-glucose-6-phosphate + ADP
NADP+
NADPH+H+
D-glucono δ -lactone 6-phosphate
Another example of coupled assay is
D-alanine + O2 pyruvate + NH4+ + H2O2 (D-alumino acid oxidase)
H2O2 + chromogen colored product + H2O (peroxidase)
Cycled assays are also there which use a small amount of a compound as rate-limiting
intermediate in reactions going both ways. Strictly these are assays for the compound rather than
for an enzyme, but the amount of compound started with might be the product of an enzyme
reaction carried out on a very small scale, say one cell. An example,
Pyruvate + NADH +H+ L-lactate + NAD+ (lactate dehydrogenase)
Ppyruvate + H2O2 L-lactate +O2 (lactate oxidase)
IIn this case the amount of pyruvate is the rate limiting compound and increase in concentration
of pyruvate is directly pproportional to the rate of reaction and it can be monitored as the
absorption of NADH.
Some standard methods for enzyme assay methods which are fairly quick and easy are:
1. Colorimetry: Any substrate or product which absorb radiations in visible range can be
monitored by this method. The colorimetric assays can be extended by the use of artificial
substrate and by the production of colored derivates of the substrate or product. In some cases,
substrate or product containing certain functional group which which can also be converted to
colored derivative.
2. Spectrophotometry: This method depends on absorption of light at a specified wave length
(When the wave length range is only narrowed down by filters) by substrate or product.
Spectrophotometry typically measures compounds in the 10-3 – 10-6 M.
Two products are very commonly monitored spectrophotometrically –the coenzymes
NADH and NADPH, which have a molar extinction coefficient of 6200 L/mole.cm at 340nm.,
and p-nitrophenol, which has an extinction coefficient of 18,300 L/mole.cm. Mny hydrolytic
enzymes are assayed using p-nitrophenyl esters and glycosides, which are artificial substrates.
Many reactions are coupled to production of NADH or NADPH, or their disappearance, because
they are so convenient to observe.
If a product absorbs uniquely and the spectrophotometer is attached to a recorder this can be a
continuous assay; also, modern spectrophotometers allow us to determine the rate directly
(A). The sample is loaded and voltage is applied. The proteins will migrate to their isoelectric
– pH, the location at which they have no net charge.
(B). The proteins form bands that can be excised and used for further experimentation.
Quarternary ammonium groups, such as triethylaminoethyl (TEAE) and QARE are also
used as anion exchangers. The most commonly used cation exchange group is carboxymethl
(CM). Phosphocellulose is another example of cation exchanger.
Ion exchange adsorbents are usually eluted by means of a gradient or steps of increasing KCl or
NaCl concentrations, in presence of a constant concentration of buffer. The charged form of the
buffer should be of the same charge as the ion exchange material, i.e. use Tris or another amine
with DEAE, phosphate or another acid with CM.
Chromatofocusing:
A variation of ion exchange technique, it chromatofocusing in which a linear pH gradient
is generated in the column with 2 or 4 pH units lower at the top as the column is eluted using the
acid form of an ampholyte at low ionic strength. When a protein is added to this pH gradient with
a buffer whose pH is similar to that prevailing at the top of the column, it will migrate down the
column as cation, encountering an increasing pH, until it reaches a pH corresponding to this
isoelectric ponit. Just beyond this pint it will become an anion and will be able to bind to the
positive groups of the exchanger (in this example column is anionexchanger). This process is
repeated in the column by changing the pH of the buffer and at the end protein is eluted at a pH
slightly above is isoelectric point. Proteins are claimed to to emerge in sharp, highly resolved
peaks. This technique has high capacity. Chromatofocusing gives a good resolution of quire
complex mixture of proteins, provided that there are discrete differences in their isoelectric point.
Proteins possessing very similar isoelectric points tend to be poorly resolved.
Hydrophobic chromatography:
Enzymes canstick to hydrophobic material byhydrophobic interation with nonpolar
regions of their surface (by val, phe, etc). The hydrophobic groups used in the columninclude
alkyl (octyl – Sepharose), phenyl (phenyl – Sepharose) andalkyl amino achains. The capacity is
high. Adsorption is strongest at high salt concentration, so a sample may be applied immediately
on redissolution after (NH4)2SO4 precipitation. Proteins are eluted by decreasing the salt
concentration. Resolution is not as good as in ion exchange chromatography.
Affinity Chromatography:
Affinity chromatography is a bio – specific process which exploits the formation of
specific and reversible complexes between a pair of biomolecules. One of the pair is called ligand
and is usually immobiliex on to a stationary phase while the other called counter ligand, is
adsorbed from the extract that is passing through the chromatographic column containing the
immobilized ligand. This technique enables separate closely related proteins from a mixture.
Method depend on a specific interaction the enzyme of interest and specific ligands, which may
be substrate analogue binding to its respective enzyme (affinity chromatorgraphy), a synthetic
dyes which can bind to specific protein (dye – lignad chromatography) a lectin, chinch can bind
to glycoproteins (lectin – affinity chromatography) or an antibodies binding to specific enzymes
antigen (immunoardsorbent chromatography).
Ligands and counter- lignds in affinity chromatography:
Lignad Counter Ligand Chromatography
Substrate, subnstrate,
1. Enzyme Affinity chromatography
analogue, cofactor, inhibitor
2. Glyco protein enzyme Lectin Lectin – affinity chromatography
3. Enzyme (an antigen) Antibody Immunoabsorbent chromatography
4. Enzyme Dye Dye- ligand chromatography
5. Metalloenzyme Metal ions Metal – chelate chromatography
The matrix or support is usually agarose or a cross – linked derivative, because it is very
poprous and admits large proteins to the pores, but has good strength and stability and is
reasonably derivatizable. In general any matrix useful for ion exchange or gel filtration
chromatography is also good for affinity chromatography. The attachment of ligand usually
proceeds by treating the matrix with a reactive compound like cyanogens bromide and
glutaraldehyde, which either leaves reactive groups to which ligands can be attached. The ligand
is usually attached with a spacer arm between it and the matrix to assure that theligand will be
fully accessible to the desiredprotein. An example of non-specific space is 1.6 – diaminohezane.
The protein mixture is applied to the column and the relevant enzyme is trapped by the
immobilized ligands while all other proteins pass through and are discarded. The enzyme is the
liberated from the column either by eluting with a deforming buffer at a pH which changes the
characteristics of the enzyme and nolonger allows it to bind to immobilized lignad. Another
method is using a competitive counter ligand, which displaces the immobilized ligand on the
enzyme.
Advantages of affinity chromatography included:
1. High selectivity compared to other purification techniques.
2. Extremely good purification upto several thousand folds in a single step and recoveries
greater than 90% can be expected provided conditions are carefully selected.
3. Affinity chromatography had a high concentration effect, especially when the enzyme of
interest is a minor component of a complex mixture.
4. Affinity methods can also be used to remove unwanted materials from a mixture.\
Immunoadsorbent chromatography:
Here immobilized ligand is antibodies to the desired enzyme. In principle, this technique
is the last word in specificity and tight binding, but of course there are drawbacks. First of all, in
order to prepare the antibodies it is required to purify the protein first and the antibody
preparation procedure is cumbersome. Another problem is elution of the bound enzyme antibody
will be difficult.
Dye ligand chromatography
Some reactive triazine-dyes (about 40 dyes) Cibacron F3GA, Procion Red H-E3B, etc.,
WW have very affinity for protein and can there for use in enzyme purification. These dyes will
easily attach to agarose or other matrices and thus can be used in an easy way. Elution is as with
‘true affinity columns, either with specific ligands which compete with the dye for the protein
binding site, or with high salt concetration or high pH.
Metal-binding chromatography
This can be a general approach for proteins with exposed histidines, cysteines or carboxyl groups
near each other, but in practice it is mainly for cloned proteins. To cloned protein, a short
sequence is added which facilities purification by binding to specific metals. The commonly used
method is to add a sequence of six or so histidinesd at the C-terminus. These bind well to divalent
cations of transition metals such as nickel. A column is prepared by attaching nitrilotriacetic acid
to a solid support. This binds nickel ions tightly; the resin is washed with 5mM imidazole to
remove unbond nickel. The fusion protein, perhaps denatured in 6M urea to ensure that the hexa-
His sequence is exposed, is applied to the column. The column is washed with dilute imidazole,
then more concentrated imidazole to elute the desired protein.Some variations are: mercuric ions
bound tightly to immobilized sulfhydryl groups, which can bind proteins by their exposed
sulfhydryl groups – elution is with excess free SH compound such as mercaptoethanol; and Fe+++
bound to iminodiacetic acid, which binds phosphoproteins by the phosphate groups.
Gel filtration (size-exclusion or molecular sieve chromatography)
The gel filtration material is porous, with pores the size of protein molecules. Large
molecules, too large to enter any of the pores, pass down the column through the space between
the gel particles. Very small molecules enter all the pores, and therefore spend much of their time
not moving and elute out only solely. Intermediate size molecules enter some of the pores, and
are eluted somewhere in between. Eluting buffer should be of high ionic strength to counteract
the few changes which may be present on the gel. Gel filtration is also used to separate proteins
from salts such as ammonium sulfate, using a small-pored gel such as Sephadex G-25 or BioGel
P10 which excludes all proteins; it is much faster than dialysis. Gel filtration is widely used to
separate protein detergent miscelles from excess of detergent, during purification of membrane
bound enzymes.
The gel filtration materials are the Sephadexes (cross-linked dextrans), ‘sephacry’ (cross-
linked acrylamide) and biogel (agarose).
High performance chromatographic techniques
HPLC stands for “high performance liquid chromatography” (through HP could also be
said to stand for “high pressure”). The stainless steel columns and robust packing material of
104m or less which can with stand high pressure are used and it enables the resolution in minutes.
These columns yield good separation and high resolution in short period. One advantage of fast
operation is that they can be run at room temperature without denaturing the protein, because the
protein comes off in 5 to 60 min. However, only small volumes can be purified. For protein
chromatography it was necessary to develop materials both strong enough like silica, to stand the
pressure and porous enough to have a high surface area for adsorption, or for gel filtration. HPLC
is a high resolution, but low capacity method. High performance Size Exclusion
Chromatography (HPSEC) utilizes rigid beads of porous silica with bonded hydrophilic polar
groups. High Performance Ion Exchange Chromatography (HIPEC) utilizes amines as anion
exchanges and sulphonic or carboxylic acids as cation exchanges, each bonded to a rigid support
as silica. High Performance Liquid Affinity Chromatography utilizes ligands bounds to supports
such as epoxy-silica. Proteins can also be separated by reverse phase HPLC (RP-HPLC) on
alkylsilica columns, the eluting solvents being buffered aqueous and organic mixtures.
Electrophorectic Tecniques
Electrophoresis is mainly an analytical procedure as it is suited for small amount of metal
it has also been used for purification of enzymes. The rate and direction of migration of a protein
in an electric field depends on its net charge and size of the molecule. In zone electrophoresis, the
separation occurs in a solid matrix commonly agarose gel or polycrylanide gel. This may be
vertical ‘disc gel electrophoresis’ and horizontal ‘thin slab gel electrophoresis’. Electrophoresis in
the absence of any support material is free solution electrophoresis or moving boundary
electrophoresis. The different analytical gel electrophoresis are
1. Simple or native gel electrophoresis
2. SDS-PAGE
3. Urea gel electrophoresis.
1. Native gel electrophoresis: The enzyme mixture to be separated is mixed with a buffer at a pH
where the proteins remain stable and in their native conformation. The pH range is usually 8-9
where most of the proteins carry negative charges and move towards the anode placed at the other
end. Any basic contaminant protein will remain in the cathodic buffer. In negative PAGE, the gel
is prepared by polymerzing acrylamide and a cross linker N,N-Methyl bisacrylamide (30:1)
together with ammonium persulphate as initiator of polymerization and TEMED (N,N,N,N-
Tetraethylendiamine) as catalyst. The pore size of the gel can be tailored to suit the molecular
weight of the sample proteins by altering the concentration of either the monomer acrylamide or
cross-linker. Increase in concentration of either of the two decreases the pore size and vice versa.
2. SDS-PAGE: This method involves the electrophorectic seperation of denatured protein on
polyacrylamide gel. The proteins in the solution are completely denatured by treatment with the
detergent sodium dodecyl sulphate (SDS) and β -mercaptoethnol and boiling the mixture for a
few minutes. Addition of mercaptoethnol disrupts disulphide linkage in protein. Each SDS
contains a negative charge and approximately one SDS bind to two amino acid residues giving
the polypeptide a large negative charge. Consequently the charge/size ratio is almost the same for
all polypeptide chains and separation of the polypeptides can occur only due to the molecular
size. The electrophoresis is carried out in vertical slab polyacrylamide gel using buffers such as
tris HCl-glycine and tris-tricine buffer for small molecular weight proteins.
The method has a high resolution and gives sharp zones. The molecular weight of sample
polypeptide chains can be determined by comparing their mobility with standard poly peptides
whose molecular weight is known.
3. Urea gel electrophoresis: This method is used particularly for protein that is insoluble at low
ionic strength. The proteins are solubilised by denaturing them completely with urea in the
presence of meracaptoethanol to disrupt any disulphide linkages. Urea containing starch gels are
easier to handle compared to polyacrylamide.
IMMUNOELECTROPHORESIS
Immunoelectrophoresis is an identification and quantofication by separating components
I mixtures by electrophoresis in an ager gels followed by immunoprecipition reaction one the
same gel. Imunoprecipitin reaction is a specific reaction between an antigen and its corresponding
antibody and it is observable as white precipitate in the pH range of 7 – 9.
CAPILLARY ELECTROPHORESIS:
Capillary electrophoresis is an analytical technique requiring only micro – to nagogram
samples. The components of the sample are allowed to seprate in a high voltage inside a capillary
tube filled with a suitable buffer. Column is usually made of stainless steel with a diameter of 100
micrometer and about 30 cm long.
ISOELECTRIC FOCUSING:
Isoelectric focusing is an example of moving boundary electrophoresis, in which a pH
gradient is set up between electrodes by allowing an acid (eg. Phosphoric acid) to diffuse from
anode and a base (eg. Ethanolamine) from cathode. The stabilization of this pH gradient is
achieved by using buffers called ampholytes. Ampholytes are synthetic aliphatic polyamino –
polycarboxylic acid and they have large number of positive and negatively charged functional
groups with closely spaced isoelectric points. During isoelectric focusing the ampholytes
migrates to their respective isoelectric pH and stabilizes the pH zones, usually a pH gradient is set
up with a difference of 0.02 pH units. The protein mixture when introduced and electrophotesis
gel, the components will be moving thl it its reach isoelectric pH and get precipitated there. The
zones containing each protein are very sharp as a result of this focusing and proteins whose
issoelecctric points differ by as little as 0.02 pH units can be distinguishable by this method.
Isotachophoresis:
Isotachophoresis is also moving boundary electrophoresis where migration of different
ionic species of the same signs all having the same counter ion in an applied electric field. In
principle, the mixture containing two ionic species A – and B – are separated on the basis of their
mobility in an electric field. For enzyme isolation, at mildly alkaline pH, when most would be
anions, a leading anion (eg. Phosphbbate) is added which has a faster mobility towards the anode
than any of the sample anion. A trailing or terminating anion with a slower mobility than any in
the sample is also added. The system is buffered by a counter cation, Tris. The leading and
trailing ions are applied at different sides of sample, leading near the anode. When high voltage is
applied all components will migrate toward the anode in discrete zones at the same
velocity(‘isotacho’ GK. ‘Same speed’). The sample will arranged in the order of mobilities. The
ions with higher effective mobility will move fast and those with lower effective mobility will
follow in decreasing order of their effective mobilities. The polarity of electric field is such that
with a homogeneous current density all the ions move with same speed at equilibrium and get
separated into a number of consecutive zones in immediate contact with each other and arranged
in order of their effective mobilities. Isotachophoresis is used in preparatory level.
Final Concentrating steps:
When further purification, it is considered that the relevant enzyme has been seprated
completely from other protein, mineral salt and other small molecules are removed by dialysis.
Dialysis: Dialysis is a membrane separation used for removal of low MW solutes such as
organic acids (< 500 MW) and inorganic ions (< 100 MW) from a solution. In enzyme
purification, dialysis is commonly used after salting out, to separation salt ions before further
purification steps. Cellophane or cellulose acetate membranes of different porosity are used for
dialysis. Complete removal of ions can be achieved but concentration of enzyme mixture is not
possible.
The purified enzyme preparation is likely to be quite dilute, so it might require
concentrating. Concentration of the enzyme preparation is achieved by lyephilisation or
ultrafiltration.
Lyophilisation is freeze-drying technique. The sample is frozen first and to it vacuum is applied
to sublimate all the ice crystals to vapour state. The powder obtained can be resuspended in a
required volume of buffer.
Ultrafiltration: This is the filtration of a protein solution through a membrane with pores small
enough to retain the protein of interest. It is a two – phase method – what is retained and what
passes through the filter. To hasten the process, it required either gas pressure on the solution
above the filter (for large volumes) or increase of gravitational force by centrifugation (for small
volumes). It is usually used just to concentrate a dilute protein solution, such as a crude culture
brotn and sometimes after dialysis for concentrating again until practically all small molecules
have been flushed through the membrane. It is sometimes used as a purification method with
retain the protein of interest usually large molecules, but pass through smaller ones. The bigget
problem is clogging of the pores by protein accumulating on the membrane surface. The enzymes
are purified and concentrated by this process.
The ideal way to complete purification is to crystallize the enzyme. Crystallization is achieved by
adding enough quantity of ammonium sulphate to cause precipitation of the enzyme and leaving
this in cold room for several days.
Membrane bound enzymes may be inactive after purification unless reintroduced into
phospholpids environment.
A good industrial protein purification processes should follow the five rules:
Minced Muscle
Step 1 Extract with 0.01 Mol dm-3 KCl
strain trough cheesecloth.
Extract
Step 2 Incubate at pH 3.5 then at pH 7.0;
Centrifuge
Supernatant
Step 3 Load on to phospho cellulose column. Elute
with pulse of AMP (5 mmol dm-3 )
Pooled fraction
containing activity
Concentrate by (NH4)2 SO4 Gel filtration –
Step 4
Scphadex G. 15
Pooled fraction
containing activity
Crystallization at 62% saturation of
Step 5
(NH4)2SO4
Crystalline enzyme
Purification table for adenylate cyclase from 6Kg of pig muscle
S.No Step Total Total Total Specific Yield Purification
Volume protein activity activity
% factor
Cm3 mg Katal Katal/Kg
I Extraction 16600 435000 0.0413 0.095 100 1.0
II Precipitation 15700 112000 0.0365 0.325 88.3 3.42
Phosphocellulose
III 1380 1716 0.0223 13.02 54.0 40.0
column
IV Gel filtration 211 462 0.0200 43.17 48.4 3.32
V Crystallization - 344 0.016 46.5 38.7 1.08
ENZYME ASSAYS
As assay is a meaurement of a given enzy,e of known characteristics in a sample. Ideally
this means measuring a specific and characteristic biological property (or ability to catalyze a
chemical reaction) of the desired enzyme. An assay must be specific for the enzyme being
purified and highly sensitive to its presence. Further more, the assay must be convenient to use
because it is to be done repeatedly especially during enzyme purification processes.
1. To measure how much of the enzyme is present in the sample. The enzyme is the variable
measured.
2. With a constant amount of the enzyme present, how does its activity vary with conditions
such as pH, temperature, variation of substrate concentration, effect of inhibitors, etc or
in prior incubation (stability to heat, chemical modification, etc). These studies help to
characterize the enzyme.
Cycle assays are also there which use a small amount of a compound as related liming
intermediate in reactions going both ways. Strictly these are assays for the compound rather than
or an enzyme, but the amount of compound started with might be the product of an enzyme
reaction carried out on a very small scale say one cell. An example,
In this case the amount of pyruvate is the rate-limiting compound and increase in
concentration of pyruvate is directly proportional to the rate of reaction and it can be monitored
as the absorption of NADH.
Enzyme concentration in the sample can be directly measured by the following analytical
methods.
Method Comments
Molecular weight determination.
Ultra filtration
Impurities determination < 5% level
Elecctrophoresis Enzymes with non – identical subunits
SDS – PAGE Mr determinator, excellent in impurity determination
Capillary electrophoresis Excellent analytical technique for Mr determination
Isoelectric focusing Sensitive method
Sub unit determination drawback – determination of enzymes
N – Terminal analysis
with blocked N – Terminus or more than one poly peptide
Specialized technique to detect primary structure and post
Mass Spectroscopy
translation modification.