1)Chem office / chem. Draw ultra (version no.

10) -- used to draw the structures of drug molecules in 2D and then to convert them in 3 D , to find the IUPAC name of the unknown ompound, to find the structure of the drug from its IUPAC name,to give NMR spectrum (approx) of unknown drug. 2)Pymol,Rasmol.Jmol,Molmol ,VMD ---all these softwares r used to visualize the protein / peptide 3 d structure.. )2D QSAR, 3D QSAR, CoMFA,CoMSIA ---for finding the structure activity relationship 8)BLAST,FASTA,PROSPECTUS,COPIA ---for sequence alignment of proteins.. and nucleic acids.. 9)Genscan, Glimmer ---gene finding and sequence analysis 10)CLUSTAL W ,CLUSTAL X ---for sequence alignment of proteins.. 11)AMBER,CHARMM,chem2 pac,GROMOS,GROMACS,MOE,SCHRODINGER ---3 D structure visualization,molecular dynamics,energy minimixation.. 12)MM 2 ,MOPAC, AM1, PM 3 ---molecular dynamics 13)Gaussian ---for quantum chemistry calculations 14)Sigmastat ---used for statistical calculations.. 19)Tripose --mainly used for molecular design and drug design

15)Alchemi,cache,SYBYL ---structure drawing, 3 D visualization of drugs and proteins 16)EMBOSS ,GCG ---clusture of many softwares used mainly for homology modeling 17)Autodock ---for docking studies (checking drug molecular fitting into receptor) 18)Topkat ------used for toxicity prediction

Plzzzzzz Visit these websites.. 1)www.pdb.org