Professional Documents
Culture Documents
TMP 96 ED
TMP 96 ED
2. Khraiwesh B, Pugalenthi G and Fedoroff NV (2013) Identification and Analysis of Red Sea
Mangrove (Avicennia marina) microRNAs by High-Throughput Sequencing and their
Association with Stress Responses. PLoS One. 2013 Apr 8;8(4):e60774.
3. Liang Y, Huimei Hong F, Ganesan Pugalenthi, Jiang S, Jauch R, Stanton LW, Kolatkar PR.
Structural analysis and dimerization profile of the SCAN domain of the pluripotency factor
Zfp206. Nucleic Acids Res. 2012 Jun 26
5. Kandaswamy KK, Pugalenthi G, Hazrati MK, Kalies KU, Martinetz T. BLProt: Prediction of
bioluminescent proteins based on support vector machine and relieff feature selection.
BMC Bioinformatics. 2011 Aug 17;12:345.
7. Kandaswamy, Chou KC, Thomas Martinetz and Kolatkar P. (2011) RSARF: Prediction of
residue solvent accessibility from protein sequence using random forest method. Protein
Pept Lett. 2012 Jan;19(1):50-6.
11. Krishna Kumar Kandaswamy, Ganesan Pugalenthi, Enno Hartmann, Steffen Möller,
PN.Suganthan, Prasanna Kolatkar, Thomas Martinetz. Prediction of Apoptosis Protein
Locations with Genetic Algorithms and Support Vector Machines Through a New Mode of
Pseudo Amino Acid Composition. Protein Pept Lett. 2010 Jul 29.
12. Ashish Anand, Ganesan Pugalenthi, Gary B. Fogel, P N Suganthan. An approach for
classification of highly imbalanced data using weighted undersampling. Amino acids 2010.
14. Pugalenthi G, K. Krishna Kumar, PN. Suganthan, G.Archunan and R.Sowdhamini (2010).
LipoPred: Identification of functionally diverse lipocalin proteins from protein sequence
using SVM approach. Amino acids 2010 Aug; 39(3):777-83.
15. K. Krishna Kumar, Pugalenthi G, PN Suganthan and Rajeev Gangal (2010). SVMCRYS: An
SVM approach for the prediction of protein crystallization propensity from protein sequence.
Protein Peptide Letters, Jan 4
16. Kandaswamy KK, Pugalenthi G, Hartmann E, Kalies KU, Möller S, Suganthan PN, Martinetz T.
(2009) SPRED: A machine learning approach for the identification of classical and non-
classical secretory proteins in mammalian genomes. Biochem Biophys Res Commun.
2009 Dec 5
17. Tang K, Pugalenthi G, Suganthan PN, Lanczycki CJ, Chakrabarti S (2009) Prediction of
functionally important sites from protein sequences using sparse kernel least squares
classifiers. Biochem Biophys Res Commun. 2009 Apr 24
18. Pugalenthi G, Ke Tang, PN. Suganthan and Saikat Chakrabarti (2009). Identification of
structurally conserved residues of proteins in absence of structural homologs using neural
network, Bioinformatics 25(2):204-10
19. Pugalenthi G, Kumar KK, Suganthan PN, Gangal R. (2008) Identification of catalytic residues
from protein structure using support vector machine with sequence and structural features.
Biochem Biophys Res Commun. 14; 367(3):630-4
20. K. Krishna Kumar, Pugalenthi G, and PN Suganthan (2009) DNA-Prot: Identification of DNA
binding proteins from protein sequence information using random forest method. Journal
of Biomolecular Structure & Dynamics, ISSN 0739-1102 Volume 26, Issue Number 6,
(2009)
21. Ashish Anand, Gary B. Fogel, Pugalenthi G and P. N. Suganthan (2008) Prediction of
Transcription Factor Families Using DNA Sequence Features. Lecture Notes in Computer
Science, Pattern Recognition in Bioinformatics
22. Ashish Anand, Pugalenthi G, Gary B. Fogel and P.N. Suganthan. Identification and Analysis
of Transcription Factor Family-specific Features Derived from DNA and Protein Information.
Pattern Recognition Letters
23. Anand A, Pugalenthi G, Suganthan PN. (2008) Predicting protein structural class by SVM
with class-wise optimized features and decision probabilities. Journal of Theoretical
Biology, 21;253(2):375-80
25. Pugalenthi G, Tang K, Suganthan PN, Archunan G, Sowdhamini R. (2007) A machine learning
approach for the identification of odorant binding proteins from sequence-derived
properties. BMC Bioinformatics. 2007 Sep 19;8(1):351
26. Pugalenthi G, Suganthan PN, Sowdhamini R, Chakrabarti S. (2007) SMotif: a server for
structural motifs in proteins. Bioinformatics. 2007 Mar 1;23(5):637-8.
30. Chakrabarti S, Anand AP, Bhardwaj N, Pugalenthi G and Sowdhamini R. (2005) SCANMOT:
searching for similar sequences using a simultaneous scan of multiple sequence motifs.
Nucleic Acids Res. 2005 Jul 1; 33:W274-6.
31. Pugalenthi G, Archunan G and Ramanathan Sowdhamini: (2005) DIAL: a web-based server
for the automatic identification of structural domains in proteins. Nucleic Acids Res., 33,
W130-2.
34. Bhaduri. A, Pugalenthi, G., Gupta, N and Sowdhamini, R.: iMOT: an interactive package for
the selection of spatially interacting motifs in protein. Nucleic Acids Res., 2004, 32,
W602-5.
35. Bhaduri, A., Pugalenthi, G. and Sowdhamini, R. (2004). PASS2: an automated database of
protein alignments organised as structural superfamilies. BMC Bioinformatics 5:35
36. A.Vinayagam, Pugalenthi, G, R.Rajesh and R.Sowdhamini (2004) DSDBASE: A consortium of
native and modelled disulphide bonds in proteins. Nucleic Acid Res., 32(1): D200-2.
37. Vinayagam, A., Shi, J., Pugalenthi. G, Meenakshi, B., Blundell, T.L. and Sowdhamini, R.
(2003). DDBASE2.0: Updated Domain Database with Improved Methods for the
Identification of Structural Domains. Bioinformatics, 19, 1760-1764.