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Solutions 4
Solutions 4
_
(10.37)
Since we have N nuclei and the free energy is extensive,
F = Nk
B
T ln
_
1 + 2e
_
(10.38)
b) We can nd the entropy from
dF = SdT pdV (10.39)
S =
_
F
T
_
V
(10.40)
Physics 423 3 Friday 4/26/2013
= Nk
B
ln
_
1 + 2e
_
+ Nk
B
T
2e
d
dT
1 + 2e
(10.41)
= Nk
B
ln
_
1 + 2e
_
+ Nk
B
T
2e
1
k
B
T
2
1 + 2e
(10.42)
S = Nk
B
ln
_
1 + 2e
_
+ N
T
2e
1 + 2e
(10.43)
c) At low temperatures 1, and we nd the entropy is:
S Nk
B
2e
+ 2N
T
e
(10.44)
= 2N
_
k
B
+
T
_
e
(10.45)
This is very small, since e
1
1 2
(10.47)
Nk
B
ln 3 + Nk
B
ln
_
1
2
3
_
2Nk
B
(10.48)
Nk
B
ln 3
8
3
Nk
B
(10.49)
So at high temperatures, the entropy approaches k
B
ln 3 per nuclei, as we should expect.
It is also interesting to note that the entropy is always less than this value.
Problem 4.5 A rubber band model Consider a model in which rubber is composed of
segments of xed length a, each of which can be oriented in any of the six cardinal directions
( x, y or z). We will assume that the rubber band is aligned in the x direction, and
there is an energetic penalty for segments to be in any of the y or z directions, but that
there is no interaction involving the orientations of neighboring segments.
1
E
x
= 0 (10.50)
E
x
= 0 (10.51)
E
anything else
= (10.52)
a) Using these energies, nd the probability for each alignment using the Boltzmann factor
and their energies.
1
This model is actually considerably more accurate (taking = 0) for long linear polymers such as DNA
in solution.
Physics 423 4 Friday 4/26/2013
b) Find the mean displacement in the x direction of a molecule composed of N segments
based on the above probabilities. Why does it have this value?
c) If we pull on the molecule with tension in the + x direction, we will need to adjust
the Boltzmann factors to include terms such as a. You should do this by adjusting
your probabilities according to the following formulas, which account for the fact that
some states have dierent displacements than others.
P
i
=
e
(E
i
r
i
x)
Z
(10.53)
Z =
i
e
(E
i
r
i
x)
(10.54)
where r
i
is the displacement of state i. Work out the probabilities under tension .
d) What is the mean displacement in the x direction L of a molecule composed of N
segments under tension ?
e) What is the entropy S of this system, as a function of and ? Keep in mind that
the entropy is given by
S = k
B
all states
i
P
i
ln P
i
f) What is the internal energy U of this system, as a function of and ?
g) What is the Helmholtz free energy of this system, F U TS?
Solution to problem 4.5 A rubber band model
a)
P
x
= P
x
=
1
Z
(10.55)
P
anything else
=
e
Z
(10.56)
Z = 2 + 4e
(10.57)
Here I use the fact that there are four states with energy and two with energy 0.
b) To nd the mean displacement of of the molecule, we rst need to nd the mean
displacement of a particular segment of the molecule, and then multiply by N. Thats
easy enough to calculate, as there are only two states that have non-zero displacements:
x =
i
P
i
x
i
(10.58)
Since the probabilities of being oriented right and left are the same, the mean displace-
ment is zero.
Physics 423 5 Friday 4/26/2013
c) When we pull on the molecule we get
P
x
=
e
a
Z
(10.59)
P
anything else
=
e
Z
(10.60)
Z = e
a
+ e
a
+ 4e
(10.61)
where Ive just substituted a for 0 in the Boltzmann factors where there is a
dierence in the displacement in the x direction.
d) To nd the mean displacenment we use the same formula as before, but the symmetry
is now broken. The mean displacement of a single link is:
x =
i
P
i
x
i
(10.62)
= a
e
a
e
a
Z
(10.63)
L = Na
e
a
e
a
e
a
+ e
a
+ 4e
(10.64)
Where Ive used the fact that the total displacement L is just N times the mean
displacement of a single segment.
e) Because there is no interaction between segments, the entropy per segment is given by
S
N
= k
B
all states
i
P
i
ln P
i
(10.65)
= k
B
i
P
i
ln
_
e
h
i
Z
_
(10.66)
= k
B
i
P
i
_
ln
_
e
h
i
_
ln Z
_
(10.67)
= k
B
i
P
i
(h
i
ln Z) (10.68)
= k
B
i
P
i
(h
i
+ ln Z) (10.69)
= k
B
_
ln Z +
i
h
i
P
i
_
(10.70)
= k
B
ln Z +
1
T
i
h
i
P
i
(10.71)
= k
B
ln Z +
1
ZT
_
ae
a
ae
a
+ 4e
_
(10.72)
Physics 423 6 Friday 4/26/2013
= k
B
ln Z +
1
T
ae
a
ae
a
+ 4e
e
a
+ e
a
+ 4e
(10.73)
To nd the total entropy, we just multiply by N, which is all right because entropy is
extensive and there is no interaction between segments in this model so they can be
treated independently.
f) To nd the internal energy is quite simple. Again, we will start by computing the
internal energy per segment, which is computed in a manner analogous to how we
found the total displacement. The one tricky thing here is that the internal energy
does not contain the terms, because that describes the work done by (or on) the
external environment.
E =
i
E
i
P
i
(10.74)
= 4
e
Z
(10.75)
U = 4N
e
e
a
+ e
a
+ 4e
(10.76)
Note that the internal energy does depend on the external tension !
g) The Helmholtz free energy is just
F = U TS (10.77)
= N
e
e
a
+ e
a
+ 4e
NT
_
k
B
ln Z +
1
T
ae
a
ae
a
+ 4e
e
a
+ e
a
+ 4e
_
(10.78)
=
Ne
e
a
+ e
a
+ 4e
Nk
B
T ln Z N
ae
a
ae
a
+ 4e
e
a
+ e
a
+ 4e
(10.79)
= Nk
B
T ln Z Na
e
a
e
a
e
a
+ e
a
+ 4e
(10.80)
(10.81)
Physics 423 7 Friday 4/26/2013