Professional Documents
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Mutation Research/Reviews in Mutation Research: Fabio Coppede'
Mutation Research/Reviews in Mutation Research: Fabio Coppede'
Review
A R T I C L E I N F O
A B S T R A C T
Article history:
Received 16 April 2009
Received in revised form 2 June 2009
Accepted 3 June 2009
Available online 11 June 2009
Folates are essential nutrients that are required for one-carbon biosynthetic and epigenetic processes. A
deciency in cellular folates results in aberrant DNA methylation, point mutations, chromosome
breakage, defective chromosome recombination and aneuploidy. In 1999 it was rst reported that
impairments in folate/homocysteine metabolism, due to genetic polymorphisms of metabolic enzymes,
could increase the risk for having an infant with Down syndrome (DS). That paper stimulated
considerable investigation into the possible role of folate/homocysteine metabolism in the risk of having
a DS child and several studies have been performed so far in different countries to better address this
issue. However, despite 10 years of active research, the question is still unsolved. Overall, both in vitro
and in vivo studies indicate that an impaired folate/homocysteine metabolism can result in chromosome
21 nondisjunction; however, the birth of a DS child seems to be the result of the interplay of several
factors of genetic, epigenetic, environmental, and stochastic origin, making it difcult to discriminate the
single contribution of each of them. My opinion is that it is now time for the design of a collaborative
study large enough to have the power to separate trisomy 21 into all its component parts and to test for
the contribution of folate/homocysteine gene polymorphisms to each of them. This study should be
paralleled by in vitro and in vivo studies aimed at clarifying the contribution, if any, of folate/
homocysteine metabolism to the methylation pattern of regions involved in recombination and
segregation of chromosome 21. Further studies are also required to address the possible contribution of
both the paternal diet and the maternal grandmother dietary habits to chromosome 21 nondisjunction
events.
2009 Elsevier B.V. All rights reserved.
Keywords:
Down syndrome (DS)
Folate metabolism
Homocysteine (Hcy)
Gene polymorphisms
Epigenetics
MTHFR
MTRR
MTR
RFC1
CBS
Contents
1.
2.
3.
4.
5.
6.
Introduction . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Folate/homocysteine/methionine metabolism and impact on DNA methylation or synthesis. .
Methylenetetrahydrofolate reductase (MTHFR) and DS risk . . . . . . . . . . . . . . . . . . . . . . . . . . . .
3.1.
The MTHFR 677C > T polymorphism and the risk of having a DS child . . . . . . . . . . . . .
3.2.
The MTHFR 1298A > C polymorphism and the risk of having a DS child . . . . . . . . . . . .
3.3.
MTHFR gene polymorphisms, chromosome damage and aneuploidy . . . . . . . . . . . . . . .
The methionine synthase-methionine synthase reductase (MTR-MTRR) complex and DS risk .
4.1.
The MTR 2756A > G polymorphism and the risk of having a DS child . . . . . . . . . . . . . .
4.2.
The MTRR 66A > G polymorphism and the risk of having a DS child . . . . . . . . . . . . . . .
4.3.
MTR and MTRR gene polymorphisms, chromosome damage and aneuploidy. . . . . . . . .
The reduced folate carrier (RFC1 or SLC19A1) and DS risk . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
5.1.
The RFC1 80G > A polymorphism and the risk of having a DS child . . . . . . . . . . . . . . . .
5.2.
Trisomy for RFC1 in DS individuals . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Cystathionine b-synthase (CBS) and DS risk . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
6.1.
The CBS 844ins68 polymorphism and the risk of having a DS child . . . . . . . . . . . . . . . .
6.2.
Trisomy for CBS in DS individuals . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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7.
8.
9.
1. Introduction
Members of the family of B9 vitamins are commonly known as
folates. They are essential nutrients that are required for one-carbon
biosynthetic and epigenetic processes. Folates are derived entirely
from dietary sources, mainly from the consumption of green
vegetables (such as spinaches, broccoli, asparagus and lettuce), fruits
(mainly oranges, lemons, strawberries and kiwi), cereals, beans and
liver. Folic acid is the synthetic form added to foods and found in
dietary supplements. After intestinal absorption, folate metabolism
requires reduction and methylation into the liver to form 5-
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Fig. 1. Simplied overview of the human folate metabolic pathway. Enzymes: CBS: cystathionine b-synthase; GART: phosphoribosylglycineamide transformylase; MTHFD1:
methylenetetrahydrofolate dehydrogenase; MAT: methionine adenosyltransferase; MTHFR: methylenetetrahydrofolate reductase; MTR: methionine synthase; MTRR:
methionine synthase reductase; RFC1: reduced folate carrier; TC: transcobalamin; TYMS: thymidilate synthase. Metabolites: DHF: dihydrofolate; GSH: glutathione; THF:
tetrahydrofolate; dTMP: deoxythymidine monophosphate; dUMP: deoxyuridine monophosphate; SAH: S-adenosyl homocysteine; SAM: S-adenosylmethionine. Cofactors:
B12: vitamin B12 or cobalamin.
56
Table 1
Genetic association studies between folate/homocysteine metabolizing gene polymorphisms and maternal risk of having a DS baby.
Reference
Country
MDS
(n)
Controls
(n)
MTRR
66A > G
MTR
2756A > G
RFC-1
80G > A
CBS 844
ins68
Others
1999
2000
USA
USA Canada
57
157
50
144
Pb OR = 2.6 (1.25.8)c
Pa OR = 1.9 (1.23.0)c
2002
Ireland
48
192
Na,b OR = N.A.
2002
France*
85
107
N OR = N.A.
2002
2002
2003
Chadefaux-Vekemans
et al. [18]
Grillo et al. [19]
Stuppia et al. [20]
Bosco et al. [21]
Pa OR = 2.6
(1.35.0)c
Pa OR = 10.5
(1.478.6)c
2003
2004
2004
2005
Na OR = N.A.
2005
2005
2006
Brazil
Italy (central)*
Italy (Sicily)*
36
64
63
200
112
72
P OR = N.A.
N OR = N.A.
N OR = N.A.
P OR = N.A.
N OR = N.A.
Na OR = N.A.
India
Japan
Turkey*
Brazil
(Sao Paulo)
France*
Brazil
(Sao Paulo)
Italy
(central)*
India
Italy*
(southern)
Spain*
N.A.
31
152
154
N.A.
60
91
158
N OR = N.A.
N OR = N.A.
N OR = 1.3 (0.82.3)c
Pa,b OR = 1.4 (1.02.1)c
N OR = 0.7 (0.41.3)c
Na OR = N.A.
Na OR = N.A.
Pa OR = 3.5
(1.210.9)c
Na OR = N.A.
119
70
119
88
N OR = N.A.
Na OR = 0.8 (0.23.0)c
N OR = N.A.
Na OR = 0.7 (0.13.5)c
N OR = N.A.
N OR = N.A.
N OR = N.A.
N OR = N.A.
80
111
Na OR = 1.6 (0.83.0)c
Na OR = 0.7 (0.41.4)c
N OR = 0.9
(0.61.3)c
Pb OR = N.A.
N OR = 0.8
(0.51.3)c
Na OR = 0.8
(0.41.5)c
Pa OR = 1.5
(1.02.1)c
N OR = 0.9
(0.41.8)c
Na OR = 1.6
(0.55.8)c
Na OR = 1.4
(0.63.0)c
149
94
165
264
P OR = 7.7 (1.735.1)
Na OR = 0.9 (0.71.4)c
91
90
N OR = N.A.
Pb OR = N.A.
China
Egypt*
China
100
42
64
100
48
70
Pb OR = 3.4 (1.48.4)c
P OR = 4.1 (1.05.7)c
Pa OR = 3.8 (1.88.5)c
P OR = 31.5 (3.5282.)c
Brazil
72
194
Na OR = 1.7 (0.64.6)c
Pa OR = 5.2
(1.914.2)c
2008
104
109
N OR = N.A.
2008
103
108
N OR = 0.6 (0.51.4)c
N OR = 0.9 (0.51.5)c
Brazil
Italy
(central)*
67
94
113
113
Na OR = 1.2 (0.81.8)c
Na OR = 0.8 (0.51.3)c
N OR = 0.7
(0.41.2)c
N OR = 1.2
(0.81.8)c
2008
2009
Santos-Reboucas
et al. [38]
Biselli et al. [37]
Coppede` et al. [39]
India
(northern)
Brazil
Na OR = 0.9
(0.51.5)c
N OR = N.A.
2009
Italy
(northern)*
74
184
N OR = 0.9 (0.42.2)c
P OR = 2.2
(1.14.4)c
2006
2006
2006
2007
2008
2008
Martnez-Fras
et al. [31]
Wang et al. [32]
Meguid et al. [33]
Wang et al. [34]
2008
P OR = 4.4 (1.413.3)
Pa OR = 1.5 (1.02.1)c
Year
P = association between the polymorphism and increased DS risk; N = no association between the polymorphism and increased DS risk; N.A. = not available; () not studied; MDS = mothers of Down syndrome (DS) individuals.
a
Genegene interaction (described in Table 2).
b
Geneenvironment interaction (described in Table 3).
c
OR = odds ratio (given with 95% condence interval).
*
Mediterranean countries.
57
58
Table 2
Interactions between polymorphisms in folate/homocysteine metabolizing genes and maternal risk of having a DS baby.
Year
Reference
Country
MTHFR + others
Other interactions
b
2000
2002
2002
2003
USA, Canada
Ireland
Brazil
Italy (Sicily)
2005
Brazil
2005
2006
Brazil
Italy (central)
2006
2006
India
Italy (southern)
2008
2008
China
Brazil
2009
Italy (central)
"=associated with maternal increased DS risk; #=associated with maternal reduced DS risk.
a
Mothers of Down syndrome individuals (MDS) showed a signicant increased number of mutant alleles than control mothers.
b
OR = Odds ratio (given with 95% condence interval).
Table 3
Homocysteine (Hcy), folates, vitamin B12 and related micronutrients in mothers of DS individuals (MDS) and control mothers, and their interaction with folate/homocysteine
metabolizing gene polymorphisms.
Year
Reference
Country
1999
USA
2002
Ireland
2002
Chadefaux-Vekemans
et al. [18]
France
2003
Italy (Sicily)
2003
2004
India
Japan
2005
Brazil
2006
2006
Italy
(southern)
Spain
2997
China
2008
2008
Egypt
Brazil
2008
2008
India
(northern)
Brazil
2009
Italy
(central)
Other nutrients
59
60
61
62
studied less extensively than MTHFR, MTR, MTRR, RFC1 and CBS and,
in most of the cases, only by a single research group. None of them
resulted to be an independent DS risk factor, but for some variants
there is indication of possible interactions with MTHFR or RFC1
polymorphisms in affecting DS risk [30,39].
7.1. Thymidylate synthase (TYMS) and DS risk
Folates are required for the de novo synthesis of nucleotides:
5,10-MTHF is reduced by MTHFR in the DNA methylation pathway,
however it is also used by thymidylate synthase for the conversion
of deoxyuridine monophosphate (dUMP) to deoxythymine monophospate (dTMP) in the de novo synthesis of pyrimidines (Fig. 1).
Therefore, polymorphisms associated with reduced MTHFR
enzyme activity shift pools of 5,10-MTHF from DNA methylation
toward DNA synthesis, whereas polymorphisms affecting TYMS
activity might shift the pools of 5,10-MTHF from DNA synthesis
toward DNA methylation [7]. Two common polymorphisms are
known in the TYMS gene, a double (2R) or triple (3R) 28 bp tandem
repeat sequence in the promoter enhancer region and a 6 bp
deletion/insertion (6 bp/6 bp+) at position 1494 (1494del6) in
the 30 -untranslated region (30 -UTR); the rst inuences TYMS
mRNA expression, the latter is thought to inuence mRNA
expression and/or stability [116,117].
We have recently investigated both TYMS 28 bp repeat and
1494del6 polymorphisms as possible risk factors for having a DS
child and none of them resulted to be independently associated
with DS risk. However, the combined MTHFR 1298AC/TYMS 2R/2R
genotype resulted in a signicant decreased DS risk respect to the
reference MTHFR 1298AA/TYMS 2R/2R genotype [39]. The majority
of chromosome 21 nondisjunction events occurs at maternal
meiosis I during maternal embryogenesis in the grandmother body
when cells have a high demand of DNA precursors and a high rate
of divisions [118]. In this context, it is likely that interactions
between polymorphisms associated with MTHFR and TYMS
enzyme activities might impair DNA methylation with consequences on chromosome segregation and DS risk [39].
7.2. Methylenetetrahydrofolate dehydrogenase (MTHFD1) and DS
risk
Methylenetetrahydrofolate dehydrogenase is a trifunctional
enzyme that interconverts tetrahydrofolate derivatives for purine,
methionine and thymidylate synthesis. The enzyme possesses
three enzymatic properties: 5,10-MTHF dehydrogenase, 5,10methenyltetrahydrofolate cyclohydrolase and 10-formyltetrahydrofolate synthetase, respectively, and catalyzes three sequential
reactions in the interconversion of THF derivatives (Fig. 1) [50]. A
common MTHFD1 1958G > A polymorphism (Arg653Gln) reduces
the enzyme activity and stability and has been associated with
increased risk of several human diseases, including neural tube
defects, congenital heart defects and unexplained second semester
pregnancy loss [119121].
Scala et al. investigated the possible contribution of the MTHFD1
1958G > A polymorphism as a maternal risk factor for having a DS
child and observed positive interactions for the combined MTHFD1
1958AA/RFC1 80GG genotype [30].
7.3. Transcobalamin (TC) and DS risk
Vitamin B12, in the form of methylcobalamin, serves as a
coenzyme for methionine synthase during the remethylation of
Hcy to methionine (Fig. 1). In circulation, vitamin B12 is bound to
two plasma proteins: transcobalamin or haptocorrin. Transcobalamin is the transport protein required for cellular uptake of
vitamin B12. Specic membrane receptors recognize the tranco-
63
64
65
Fig. 2. Diagram showing the possible contribution of folate/homocysteine metabolism to the formation of chromosome 21 disomic gametes, leading to Down syndrome (DS). (A)
Most of the maternal meiotic errors leading to chromosome 21 nondisjunction occurs at maternal meiosis I, during maternal embryogenesis in the maternal grandmother body. In
this context the maternal grandmother diet and genotype during pregnancy might affect chromosome 21 methylation and segregation during meiotic and mitotic processes in the
developing female foetus (that, in adulthood, could originate a DS child). (B) The maternal nutrition status and genotype during peri-conception might affect some of the
chromosome 21 malsegregation events at maternal meiosis II. C) The paternal diet and genotype could result in aberrant chromosome 21 segregation and aneuploidy during
spermatogenesis, potentially resulting in DS cases of paternal origin. D) After conception, the selection of those trisomic foetuses (DS foetuses) that will survive up to birth is
believed to be the result of complex interactions between the maternal intake and metabolism of folates and the requirements of the developing DS foetus.
meiosis [45]. Hulte`n et al. also suggested that the maternal age
effect is caused by a differential selection of these cells during
foetal and postnatal development until ovulation, and that the
exceptional occurrence of high-grade ovarian mosaicism might
explain why some women have a child with DS already at young
age as well as an associated increased incidence at subsequent
conceptions [44]. A recent retrospective analysis of 151 families
with a DS baby found eight families with a carrier of gonadal
mosaicism. In all cases, the mother was younger than 35 years old
and the prevalence of parental mosaicism in young couples was
estimated to be 6.5% [138].
The ndings by Hulte`n et al. [44] are not in contrast with our
recent observations in peripheral lymphocytes of MDS aging less
than 35 years at conception, since we observed a signicant
increased frequency of both chromosome 13 and 21 malsegregation events as compared to a control group [67]. These ndings
point that nondisjunction events also occur in the somatic cells of
these women, suggesting a generalized susceptibility to abnormal
66
which have often been performed in case groups of 100 MDS or less
[1540]. There are at least two possible options to overcome the
limits of the reduced sample size: the rst requires pooled analysis
and meta-analysis of published data which are often tedious
processes since only few tabular data are usually provided by the
authors in the published manuscripts, making it difcult to
perform meta-analysis. The second option would be the creation of
an international collaborative research group that could easily
recruit an adequate number of MDS to test for gene-gene
interactions with enough statistical power. Such an international
collaborative research is highly desirable since it seems almost
impossible for each single research unit to collect a number of
samples large enough to perform such a study. Moreover, the
researchers could exchange all their data on MDS and this would
be really helpful to reduce the bias due to other risk factors.
As largely discussed in section 8, several recent studies suggest
that chromosome 21 nondisjunction is a multifactorial trait that
must be dissected into its component parts in order to understand its
causes. Only an international collaborative research group could
obtain such an adequate number of MDS to separate DS cases due to
ovarian mosaicism from those caused by a meiotic failure, errors
occurred at meiosis I from those occurred at meiosis II, nondisjunction events caused by impaired recombination from those due to the
aging of the meiotic machinery. Such a separation could help to
better clarify the contribution of impaired folate metabolism to each
of the processes leading to disomy 21 in gametes.
Based on the genetic association studies performed so far [15
40], on the minor allele frequencies of the studied polymorphisms,
and on the odds ratios generated in those studies (Table 1), I have
estimated that a casecontrol study of at least 350 individuals each
would be required to detect with enough statistical power (> 80%)
an independent association between each single polymorphism
and the risk of having a DS child, resulting in an odds ratio of 1.5 or
higher. However, this number should be increased to test for genegene interactions. For example, I have estimated that to test with
enough statistical power an interaction between two different
polymorphisms, the rst having a low frequency of 1516%
(obtained in one of my papers for the MTR 2756G allele [39]), and
the latter a high frequency of 4647% (obtained in the same paper
for the MTRR 66G allele [39]), a casecontrol group of at least 650
subjects each would be required to detect odds ratios of 1.5 or
higher. Therefore, we could assume that 650 MDS and 650 control
mothers would be enough to test with power for the individual
contribution of each single polymorphism to DS risk and for the
majority of the gene-gene interactions. However, this number
should be further increased to take into consideration additional
factors. For example, it should be doubled to discriminate between
errors occurred at maternal meiosis I and meiosis II and/or to
discriminate between conceptions at early (< 35 years) or late (>
35 years) maternal age. Moreover, the required number of subjects
increases also as a function of the number of dietary factors to be
included (for example plasma folate and Hcy levels). Therefore, I
would assume that only a casecontrol study of at least 1500
individuals each could have enough power to unravel the effect of
genotype and nutrition on DS risk, and that such a number can only
be achieved trough collaborative research. Such a study could also
evaluate the tendency to generate chromosome 21 aneuploid cells
in peripheral lymphocytes in relation to folate/Hcy values and
metabolic polymorphisms.
Studies performed in cell cultures have clearly demonstrated
that folate deciency from the media is able to induce chromosome
21 aneuploidy [132]. Moreover, we have recently observed that
MTHFR gene polymorphisms correlate with chromosome damage
and aneuploidy in blood cells obtained from MDS [39]. However,
several chromosome 21 nondisjunction events are likely to be
caused by the lack or the altered placement of recombination [42].
67
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