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BT2351
BT2351
BT2351
BIO INFORMATICS II
LTPC
3003
OBJECTIVES
At the end of the course the student would have gained knowledge in physical mapping
techniques, overview of various genomes, techniques applied in Proteomics & Genomics and
functional Genomics. This will be very useful in the area of vaccine design.
UNIT I
INTRODUCTION
Overview of Genomes of Bacteria , Archae and Eukaryota.
UNIT II
Top down and bottom up approach; linking and jumping of clones; genome sequencing;
placing small fragments on map; STS assembly; gap closure; pooling strategies; cytogenetic
mapping techniques.
UNIT III
FUNCTIONAL GENOMICS
Gene finding; annotation; ORF and functional prediction; Substractive DNA library
screening; differential display and representational difference analysis; SAGE; TOGA
UNIT IV
PROTEOMICS TECHNIQUES
2.
3.
4.
1.
2.
LP- BT 2351
LESSON PLAN
LP Rev. No: 00
Sub Code & Name: BT 2351
Unit: I
UNIT I
BIO INFORMATICS II
Branch: Biotechnology
Semester : VI
INTRODUCTION
Date:15/12/10
Page 1 of 6
6
Session
No
1.
3.
5.
7.
8.
6.
Time
(min)
Topics to be covered
Introduction to Genomics,
Gene, Genome and
Organization of genes in
Prokaryotes
Text Book
&
Ref Book
AR1
50
Organization of genes in
Eukaryotes
50
50
50
50
Review
50
Page No
01-09
10-13
17-19
AR2
10-10
41-43
AR1
19-33
AR2
44-45
AR1
13-16
AR2
45-50
AR2
93-105
AR2
105-121
--
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Teaching
Method
BB&Chalk
BB&Chalk
BB&Chalk
BB&Chalk
BB&Chalk
BB&Chalk
DOC/LP/01/28.02.02
LP- BT 2351
LESSON PLAN
Sub Code & Name: BT 2351
Unit: I
BIO INFORMATICS II
Branch: Biotechnology
Semester : VI
LP Rev. No: 00
Date:15/12/10
Page 2 of 6
UNIT II
Top down and bottom up approach; linking and jumping of clones; genome sequencing; placing
small fragments on map; STS assembly; gap closure; pooling strategies; cytogenetic mapping
techniques.
Session
No
Time
(min)
Topics to be covered
7.
50
8.
50
9.
50
10.
12.
13.
15.
16.
50
50
Genome sequencing
50
50
50
Text Book
&
Ref Book
ARB2
ARB2
ARB2
Page No
50-52
53-55
55-57
ARB2
57-60
ARB1
ARB2
47-70
ARB2
64-65
ARB1
ARB2
ARB2
71-78
65-66
68-70
60-63
Teaching
Method
BB& Chalk
OHP
BB& Chalk
OHP
BB& Chalk
OHP
BB& Chalk
OHP
BB& Chalk
OHP
BB& Chalk
OHP
BB& Chalk
BB& Chalk
OHP
ARB1
18.
Pooling strategies
50
ARB1
82-85
78-79
BB& Chalk
DOC/LP/01/28.02.02
LP- BT 2351
LESSON PLAN
Sub Code & Name: BT 2351
Unit: I
BIO INFORMATICS II
Branch: Biotechnology
Semester : VI
LP Rev. No: 00
Date:15/12/10
Page 3 of 6
UNIT III
FUNCTIONAL GENOMICS
Gene finding; annotation; ORF and functional prediction; Substractive DNA library
screening; differential display and representational difference analysis; SAGE; TOGA
Session
No
19.
Topics to be covered
Time
(min)
Text Book
&
Ref Book
ARB2
50
ARB1
21.
22.
23.
24.
50
ARB2
50
R2
50
R2
50
R2
25.
Differential display
50
R2
26.
Representational difference
50
R2
Page No
171-174,
12, 366
Teaching
Method
BB&Chalk
94-112
69-70
180-181
9-17
18-25
26-30
33-42
45-50
BB& Chalk
OHP
BB& Chalk
OHP
BB&Chalk
BB& Chalk
OHP
BB& Chalk
OHP
BB& Chalk
27.
28.
29.
30.
analysis- Sect- I
Representational difference
analysis- Sect- II
Representational difference
analysis- Sect- III
Representational difference
analysis- Sect- IV
TOGA, SAGE,
50
R2
50-70
50
R2
71-75
50
R2
75-80
50
ARB2
203-208
BB& Chalk
BB& Chalk
BB& Chalk
BB& Chalk
DOC/LP/01/28.02.02
LP- BT 2351
LESSON PLAN
Sub Code & Name: BT 2351
Unit: I
BIO INFORMATICS II
Branch: Biotechnology
Semester : VI
LP Rev. No: 00
Date:15/12/10
Page 4 of 6
Session
No
Topics to be covered
Time
(min)
Text Book
&
Ref Book
Internet
sources
Page No
BB&Chalk
31.
50
32.
2 D gel electrophoresis
50
R2
181-186
BB & Chalk
OHP
33.
50
R2
187-195
BB & Chalk
OHP
--------
Teaching
Method
BB & Chalk
OHP
BB & Chalk
OHP
34.
50
R2
197-210-
35.
Protein cleavage
50
R2
210-218
50
R2
218-226
BB&Chalk
50
R2
227-234
BB&Chalk
50
R2
36.
37.
38.
234-237
BB&Chalk
DOC/LP/01/28.02.02
LP- BT 2351
LESSON PLAN
Sub Code & Name: BT 2351
Unit: I
BIO INFORMATICS II
Branch: Biotechnology
Semester : VI
LP Rev. No: 00
Date:15/12/10
Page 5 of 6
UNIT V
PROTEIN PROFILING
12
Session
No
39.
40.
41.
42.
43.
44.
45.
46.
47.
48.
49.
50
50
50
50
50
Text Book
&
Ref Book
ARB2
ARB2
T2
T2
T2
50
T2
114-120
BB&Chalk
ARB3
141-142
BB&Chalk
ARB3
143-145
BB&Chalk
Review- I
Review-II
50
50
Topics to be covered
Time
(min)
Page No
Teaching
Method
286-289
282-284
257-263
263-271
107-114
BB&Chalk
BB&Chalk
BB&Chalk
BB&Chalk
BB&Chalk
50
50
50
Internet
sources
-------
BB&Chalk
----------
BB&Chalk
BB&Chalk
DOC/LP/01/28.02.02
LP- BT 2351
LESSON PLAN
Sub Code & Name: BT 2351
Unit: I
LP Rev. No: 00
BIO INFORMATICS II
Branch: Biotechnology
Date:15/12/10
Semester : VI
Page 6 of 6
COURSE DELIVERY PLAN:
WEEK
UNITS
2
I Unit
II Unit
10
III Unit
11
12
VI Unit
13
14
V Unit
REFERENCES
1.
2.
3.
4.
1.
2.
3.
Prepared by
Approved by
15
Signature
Name
Designation
Date
S.Naga vignesh
Asst.Professor, Biotechnology
Prof. M.Sivanandham
HOD, Biotechnology