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Grana Padano cheese whey starters: Microbial composition and strain distribution
Lia Rossetti a, Maria Emanuela Fornasari a, Monica Gatti b, Camilla Lazzi b,
Erasmo Neviani b, Giorgio Giraffa a,
a
b
Agriculture Research Council, Research Centre for Forage and Dairy Productions (CRA-FLC), Viale Piacenza 29, 26900 Lodi, Italy
Department of Genetics, Biology of Microorganisms, Anthropology, Evolution, University of Parma, Viale Usberti 11/A, 43100 Parma, Italy
A R T I C L E
I N F O
Article history:
Received 10 May 2008
Received in revised form 6 June 2008
Accepted 6 June 2008
Keywords:
Thermophilic lactic acid bacteria
Microbial identication
Microbial typing
Grana Padano cheese
Artisan whey starters
A B S T R A C T
The aim of this work was to evaluate the species composition and the genotypic strain heterogeneity of
dominant lactic acid bacteria (LAB) isolated from whey starter cultures used to manufacture Grana Padano
cheese. Twenty-four Grana Padano cheese whey starters collected from dairies located over a wide
geographic production area in the north of Italy were analyzed. Total thermophilic LAB streptococci and
lactobacilli were quantied by agar plate counting. Population structure of the dominant and metabolically
active LAB species present in the starters was proled by reverse transcriptase, length heterogeneity-PCR
(RTLHPCR), a culture-independent technique successfully applied to study whey starter ecosystems. The
dominant bacterial species were Lactobacillus helveticus, Lactobacillus delbrueckii subsp. lactis, Streptococcus
thermophilus, and Lactobacillus fermentum. Diversity in the species composition allowed the whey cultures to
be grouped into four main typologies, the one containing L. helveticus, L. delbrueckii subsp. lactis, and S.
thermophilus being the most frequent one (45% of the cultures analyzed), followed by that containing only
the two lactobacilli (40%). Only a minor fraction of the cultures contained L. helveticus alone (4%) or all the
four LAB species (11%). Five hundred and twelve strains were isolated from the 24 cultures and identied by
M13-PCR ngerprinting coupled with 16S rRNA gene sequencing. Most of the strains were L. helveticus (190
strains; 37% of the total), L delbrueckii subsp. lactis (90 strains; 18%) and S. thermophilus (215 strains; 42%).
This result was in good agreement with the qualitative whey starter composition observed by RTLHPCR.
M13-PCR ngerprinting indicated a markedly low infra-species diversity, i.e. the same biotypes were often
found in more than one culture. The distribution of the biotypes into the different cultures was mainly dairy
plant-specic rather than correlated with the different production areas.
2008 Elsevier B.V. All rights reserved.
1. Introduction
Artisan starter cultures are used for the production of Italian hard
cheeses such as Grana Padano, Parmigiano Reggiano, and Provolone,
where they play an acknowledged role in the curd acidication and
achievement of the sensory characteristics of the cheese (Beresford
et al., 2001). Artisan cultures are still prepared in the traditional way by
removing some of the whey drained from the cheese vat at the end of
cheese-making. Nowadays, the cheese-making of Italian hard cheeses
includes a cooking step at 5055 C, which is usually applied before
whey drainage. The whey, which is still at 4852 C before drainage, is
then incubated at a controlled temperature of 4445 C until the pH
reaches a nal value of about 3.5 (Santarelli et al., 2008). The
concomitant pressure of both chemical and physical actions leads to
the selection of a characteristic microora, consisting of thermophilic,
aciduric, and moderately heat resistant lactic acid bacteria (LAB). It is
well established that whey starters for hard cooked cheeses are
Corresponding author. Research Unit: Dairy Productions, Via Lombardo 11, 26900
Lodi, Italy. Tel.: +39 0371 45011; fax: +39 0371 35579.
E-mail address: giorgio.giraffa@entecra.it (G. Giraffa).
0168-1605/$ see front matter 2008 Elsevier B.V. All rights reserved.
doi:10.1016/j.ijfoodmicro.2008.06.005
dominated by a thermophilic LAB microbiota belonging to Lactobacillus helveticus, Lactobacillus delbrueckii subsp. bulgaricus, Lactobacillus
delbrueckii subsp. lactis, Lactobacillus fermentum, and Streptococcus
thermophilus (Parente and Cogan, 2004).
Apparently, the microbial composition and diversity of Grana Padano
cheese whey starters are modulated by the selectivity of the incubation
conditions of the drained whey, in strict synergy with small variations in
the technology applied (Neviani et al., 1995, Giraffa et al., 1998).
However, seasonal and geographical uctuations in the microbial
composition and acidication performance of the starters have often
been reported (Fortina et al.,1998; Giraffa et al., 2004). This suggests that
the biological richness of these cultures is related also to the microbial
composition of the drained whey, which in turn is related to that of the
raw milk. Several exhaustive studies concerning the microbial composition and diversity of the microbiota associated with the natural whey
starters for Grana cheese have been carried out (Giraffa et al.,1998, 2000;
Fortina et al., 1998; Gatti et al., 2004). Microbial diversity and population
structure of the LAB community present in these starters have been
described through length heterogeneity-PCR (LH-PCR), a cultureindependent technique (Lazzi et al., 2004). Nevertheless, recent
investigations suggest that a limited number of genotypically diverse
169
variable regions of the 16S rRNA gene was reverse transcribed and
amplied using LH-PCR primers described previously (Lazzi et al., 2004).
One step RT-PCR was performed using the Gene Amp EZ rTth RNA PCR
Kit (Applera Italia, Monza, Italy) according to the instructions given by
the manufacturer. Segments of 16S rRNA gene were reverse transcribed
by an initial incubation at 60 C for 30 min. The resulting cDNA was
amplied by PCR using the following conditions: one cycle of 94 C for
1 min, 20 cycles of 94 C for 15 s, 49 C for 30 s, and 72 C for 30 s. Final
extension was carried out at 72 C for 7 min. Reactions were carried out
in a 9700 PCR system (Applied Biosystem, Foster City, CA). PCR without a
reverse transcription step was performed to verify the absence of
contaminant DNA. Bacterial composition of the 24 whey starters was
evaluated after separation of RT-PCR products by capillary electrophoresis on an ABI Prism 310 Genetic Analyzer (Applied Biosystems). Runs
were performed under denaturing conditions and LHPCR proles were
analyzed using Genescan software (version 3.1; Applied Biosystems).
The size, in basepairs, of the LHPCR fragments was estimated by
reference to the internal size standard using the Local Southern method
and no smoothing option.
2.3. Microbial counts and isolation of thermophilic LAB
Thermophilic lactobacilli were counted on whey agar medium
(WAM), according to Gatti et al. (2003) after anaerobic incubation at
42 C for 48 h. Thermophilic streptococci were counted on M17 agar
containing 7% (vol:vol) of sterile skimmed whey (M17-SSW) as
reported by Fornasari et al. (2006), after incubation at 37 C for
48 h. Both counts were performed in duplicate. A total of 512 colonies
from WAM and M17-SSW agar plates were selected by morphology,
isolated, and grown on appropriate media.
Thermophilic LAB isolates were preliminary identied by RAPDPCR ngerprinting according to Rossetti and Giraffa (2005). Genomic
DNA was extracted and used as a template in PCR ngerprinting
Table 1
Microbial analysis of Grana Padano cheese whey starters
Whey starters
Production
provincea (region)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
Average
BG (Lombardia)
BS (Lombardia)
BS (Lombardia)
BS (Lombardia)
BS (Lombardia)
CR (Lombardia)
CR (Lombardia)
CR (Lombardia)
LO (Lombardia)
MN (Lombardia)
MN (Lombardia)
MN (Lombardia)
MN (Lombardia)
PC (Emilia-Romagna)
PC (Emilia-Romagna)
PC (Emilia-Romagna)
PC (Emilia-Romagna)
PC (Emilia-Romagna)
VI (Veneto)
VI (Veneto)
VI (Veneto)
VR (Veneto)
VR (Veneto)
VR (Veneto)
Microbial counts
(log CFU mL 1 SD)
WAM
M17-SSW
S. thermophilus
L. delbrueckii
L. helveticus
L. fermentum
9.01 0.08
8.70 0.01
9.74 0.01
9.10 0.07
8.93 0.01
9.80 0.02
8.81 0.12
8.67 0.05
8.61 0.30
9.90 0.01
9.65 0.06
9.42 0.04
9.48 0.06
9.39 0.03
8.73 0.03
9.84 0.01
8.58 0.03
9.11 0.12
9.01 0.02
8.47 0.10
8.80 0.01
8.80 0.04
9.31 0.01
9.11 0.03
9.12 0.44
6.99 0.07
6.08 0.11
7.41 0.03
7.00 0.03
7.85 0.01
8.41 0.08
5.80 0.11
7.61 0.01
6.39 0.06
5.99 0.01
7.51 0.02
7.38 0.01
7.67 0.01
5.27 0.04
4.19 0.16
6.28 0,01
4.59 0.16
4.95 0.02
3.65 0.26
2.00 0.07
3.00 0.17
7.58 0.04
7.92 0.09
7.64 0.02
6.22 1.72
bLOD
19%
9%
2%
4%
11%
bLOD
34%
5%
5%
3%
3%
11%
bLOD
13%
2%
10%
bLOD
2%
bLOD
bLOD
2%
bLOD
bLOD
11%
31%
27%
13%
24%
46%
6%
22%
25%
27%
30%
26%
45%
44%
28%
45%
32%
20%
14%
32%
22%
39%
27%
17%
89%
47%
64%
85%
72%
43%
94%
44%
70%
68%
67%
71%
44%
56%
60%
50%
58%
80%
85%
69%
78%
59%
73%
83%
bLOD
3%
bLOD
bLOD
bLOD
1%
bLOD
1%
bLOD
bLOD
bLOD
bLOD
bLOD
bLOD
bLOD
3%
bLOD
bLOD
bLOD
bLOD
bLOD
bLOD
bLOD
bLOD
Counts of thermophilic lactobacilli were performed in whey agar medium (WAM) and counts of thermophilic streptococci were performed in M17-SSW. Bacterial composition of the
same samples were determined by RTLHPCR and expressed in percentage of the species; the lower limit of detection (LOD) of the technique is 105CFU ml 1 (Lazzi et al., 2004).
a
BG: Bergamo; BS: Brescia; CR: Cremona; LO: Lodi; MN: Mantova; PC: Piacenza; VI: Vicenza; VR: Verona.
170
Biotypes
Frequency of
biotypes within
the species (%)a
L. helveticus
a
b
c
d
1.1
0.5
20.0
14.7
e
f
g
h
2.1
0.5
1.1
21.1
i
j
k
l
m
0.5
2.1
0.5
0.5
4.6
10.5
o
p
4.2
5.2
q
r
0.5
6.7
s
t
u
a
2.5
0.5
0.5
8.9
b
c
2.2
70.0
d
a
b
c
18.9
4.2
4.7
89.8
1.4
11 (MN)
16 (PC)
8 (CR); 9 (LO)
3 (BS); 7 (CR); 8 (CR); 16 (PC); 20 (VI);
23 (VR); 24 (VR)
16 (PC); 19 (VI); 20 (VI); 23 (VR)
23 (VR)
11 (MN)
5 (BS); 7 (CR); 8 (CR); 9 (LO);
12 (MN); 14 (PC); 16 (PC);
1921 (VI); 23 (VR)
21 (VI)
11 (MN); 16 (PC)
14 (PC)
4 (BS)
1 (BG); 10 (MN); 15 (PC); 16 (PC);
21 (VI); 23 (VR)
3 (BS); 6 (CR); 9 (LO); 11 (MN);
12 (MN); 16 (PC); 17 (PC); 24 (VR)
1 (BG); 4 (BS); 15 (PC), 18 (PC)
1 (BG); 7 (CR); 15 (PC); 18 (PC);
19 (VI); 24 (VR)
16 (PC)
3 (BS); 68 (CR); 1012 (MN);
17 (PC); 19 (VI)
4 (BS); 24 (VR)
5 (BS)
17 (PC)
9 (LO); 14 (PC), 15 (PC); 17 (PC);
24 (VR)
15 (PC); 17 (PC)
1 (BG); 35 (BS); 7
(CR); 1012 (MN); 1418 (PC);
1921 (VI); 23 (VR);
24 (VR)
8 (CR); 9 (LO)
2 (BS); 13 (MN)
8 (CR); 9 (LO)
1 (BG); 35 (BS); 68 (CR); 1013
(MN); 14 (PC); 1618 (PC);
2224 (VR)
3 (BS)
L. delbrueckii
subsp. lactis
S. thermophilus
The number of biotypes for each species was calculated by cluster analysis at a similarity
level of 75%.
a
The % within each species is calculated as follows: (number of isolates of each
biotype / number of isolates of all biotypes) 100.
b
BG: Bergamo; BS: Brescia; CR: Cremona; LO: Lodi; MN: Mantova; PC: Piacenza;
VI: Vicenza; VR: Verona.
171