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Phospho Ubiquitin - Upending The PINK Parkin Ubiquitin Cascade
Phospho Ubiquitin - Upending The PINK Parkin Ubiquitin Cascade
Phospho Ubiquitin - Upending The PINK Parkin Ubiquitin Cascade
2016;159(4):379385
doi:10.1093/jb/mvv125
JB Review
Phospho-ubiquitin: upending the PINKParkinubiquitin
cascade
Received September 2, 2015; accepted October 9, 2015; published online February 2, 2016
Keywords: mitophagy/Parkin/phosphorylation/
PINK1/ubiquitin.
The Authors 2016. Published by Oxford University Press on behalf of the Japanese Biochemical Society. All rights reserved
379
Featured Article
Noriyuki Matsuda*
N. Matsuda
auto-phosphorylation site
Ala Phe
(103) (104)
1
34 94
PINK1 MTS
B
110
TMD
P
156
Ser Ser
(228) (402) 509 581 (a.a.)
Kinase Domain
On energized mitochondria
On depolarized mitochondria
3. N-end-rule mediated
degradation of PINK1.
ON.
OFF.
Fig. 1 Schematic depiction of PINK1. (A) Domain structure and
important residues of PINK1. (B) Molecular mechanism underlying
PINK1 accumulation and activation on depolarized mitochondria
(see text for details).
PINK1/Parkin-mediated mitophagy has been controversial (1719). These ndings challenged the validity
of early studies and the deduced hypothesis.
To address these issues, the research community established a more reliable system for monitoring mitophagy. Recently, the measurement of mitochondrial
DNA as a degradation indicator has been touted as
a more robust means of following mitophagy rather
than relying on the degradation of OMM proteins
(20). In addition, some researchers have implemented
a pH-based spectral shift in a mitochondrial uorescent protein (mt-mKeima) following lysosomal engulfment (20, 21). To depolarize mitochondria, respiratory
complex inhibitors oligomycin and antimycin A have
been recently utilized as they target mitochondria more
specically than pan-depolarizing agents such as
CCCP (20). We believe these methodological changes
in experimental design will facilitate mitophagy studies
and generate a more accurate picture of the mechanisms driving this cellular process.
Ser65
(phosphorylation site)
1
Parkin
P 76
141
Ubl
465 (a.a.)
RING2
Ubl domain
377 415
Ubiquitin
OFF.
ON.
C
Ph
os-
Ub
RIN
G1
bl
IBR
RING
1
l
Ub
G
RIN
Cys431
RING2
P
-U
NG
RI
Cys431
RING2
os
Ph
328
RING1 IBR
216 228
RING0(UPD)
Cys431
(catalytic core)
IBR
N. Matsuda
(Tom70-4xUbiG76V) efciently restored mitochondrial localization of the Parkin mutants lacking E3 activity (e.g. C431S and C431N) (33, 34). In these cases,
a decrease in m and the presence of PINK1
were required, suggesting a cooperative product of
Parkin-catalyzed ubiquitylation and PINK1 recruits
E3-imcompetent Parkin mutants to damaged mitochondria. Importantly, introduction of a phospho-mimetic
mutation into both Parkin and a mitochondria-localized
tandem ubiquitin chain (Mt-4xUb) enabled Parkin to
localize on mitochondria irrespective of m and
PINK1 (54). Furthermore, Parkin preferentially binds
phosphorylated polyubiquitin chains in vitro (5254).
These results strongly suggest that a PINK1 phosphorylated ubiquitin chain is the most probable receptor for
Parkin.
Phosphorylation
(1)
PINK1
PINK1
Par
kin
(2)
Ub
recruitment
activation
Ub
(3)
Ub
Ub
Ub Ub (4)
Ub Ub
Proteasomal
and/or
autophagic
degradation
Damaged mitochondria
Ub Ubiquitin
Conclusion Remarks
Phosphorylation of ubiquitin Ser65, which we and
other researchers discovered, can be used as an indicator of active PINK1/Parkin and damaged mitochondria. This knowledge could potentially be developed as
a pathological or clinical molecular marker for
Parkinsons disease in the future. However, I think
more important aspects of this nding are that it overturns the classical hierarchy between the upstream ubiquitin ligase and the downstream ubiquitin, and can
open new avenues for further exploration in ubiquitin
and autophagy studies. To date, ubiquitylation has
been a well-known post-translational modication;
however, it is becoming increasingly clear that modied ubiquitin itself plays a critical cellular function
(57). This work can establish new principles of how a
simple ubiquitin tag plays more varied roles than
expected.
K1
Ub Ubiquitin
LC
Phosphorylation
UL
Optineurin
Par
kin
PINK1
PINK1
P
Ub
Ub
Damaged mitochondria
LC
NDP52
Ub
Ub
ULK
Phagophore
Fig. 4 Recently proposed new model for ubiquitin-mediated mitophagy. Although further validation studies remain to be demonstrated, this new model suggests that PINK1 and Parkin cooperate
to generate phosphorylated ubiquitin chains on depolarized mitochondria, which then induce Optineurin and NDP52 recruitment to
initiate mitophagy. In this context, PINK1 generates a mitophagy
signal per se, and Parkin serves as an amplier of the signal.
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Although further biochemical and structural studies
should help to understand this novel model, the
phospho-ubiquitinbinding activity of Optineurin
and NDP52 (20) provides a signicant clue to understand how phosphorylated ubiquitin assists degradation of damaged mitochondria.
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