Rat Brain Atlas

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0

+15

+5

+5

rf

ec

-5

10

-15
Bregma 0

-5

-10

Interaural 9.20 mm

+10

0 Interaural

10

lo

mfba

aca

cg

mfbb

SI

ZL

LV

2n

VDB

MS

Ld

cc

SHi

IG

Cg2

Cg1

LSV

PLd

HDB

LSI

LSD

M2

ICj

SIB

VP

BSTL

BSTMA

M1

Tu

IPAC

CB

CPu

LSS

S1FL

Cl

Pir

DEn

S1DZ

S2

DI

GI

Figure 17

Bregma 0.20 mm

AIP

S1ULp

10

+15

+5

+5

ec

-5

10

-15
Bregma 0

-5

-10

Interaural 8.74 mm

rf

+10

0 Interaural

10

lo

mfba

acp

mfba

ic

mfbb

acp

st

LV

cg

ZL

ac

LSD

AVPe

MPOL

VMPO

ox

LSV

M1

Al

BSTMA

LSI

LPO

HDB

SIB

BSTMV BSTLP
BSTLV
StA
ADP
PS
Fu

SFi

IG

Cg2

MnPO

Pe

M2

Cg1

MS

MPA 3V

df

cc

VP

LGP

Tu

VP

ICj

MCPO

IPACM

BSTLJ

BSTLD

S1HL

IPACL

CPu

S1FL

LSS

S1DZ

CxA

VEn

Pir

S1BF

Cl

AIP

DI

GI

S2

Figure 18

Bregma -0.26 mm

DEn

10

+15

+5

rf

+5

ec

-5

10

-15
Bregma 0

-5

-10

Interaural 8.70 mm

+10

0 Interaural

10

lo

4
5

6b

6a

mfba

acp

mfba

LGP

ic

mfbb

st

LV

cg

pcf

StA

acp

MPA

ac

IG

MPOL

ADP

AVPe

Pe

VMPO
ox

3V

SFi

Cg2

M1

LSV

LSI

LPO

VLPO

PS

HDB

VP

BSTLJ
BSTLD
BSTLP

S1HL

SIB

Fu

BSTMV BSTLV

BSTMA

LSD

M2
Cg1

MnPO

df

cc

Tu

VP

ICj

IPACL

CPu

S1FL

MCPO

IPACM

VEn

LSS

S1DZ

CxA

Cl

S1BF

AIP

DI

GI

S2

Figure 19

Bregma -0.30 mm

Pir

DEn

10

+15

+5

rf

+5

-5

10

-15
Bregma 0

-5

-10

Interaural 8.60 mm

+10

0 Interaural

10

ec

lo

LGP

mfba

acp

mfba

ic

mfbb

st

LV

cg

df

cc

LSD

SFi

IG

3V

MPOL

Pe MPA

VMPO
ox

M2

Cg2

Cg1

MnPO
ADP

AVPe

StA

ac

CST

M1

HDB

LPO

VLPO

PS

BSTMV

BSTMA

LSV

LSI

S1HL

Tu

VP

ICj

MCPO

VP

3
4

CxA

LSS

Pir

VEn

S1DZ

IPACL

CPu

S1FL

BSTLJ
BSTLP
BSTLI

IPACM

BSTLV

SIB

S1BF

AIP

DI

GI

S2

Figure 20

Bregma -0.40 mm

Cl

DEn

10

+15

+5

+5

-5

ec

10

-15
Bregma 0

-5

-10

Interaural 8.20 mm

rf

+10

0 Interaural

10

lo

acp

mfba

LGP
B

ic

st

mfbb

LV

cg

APF

vhc

PDP mch

sm

pcf

ox

MPA

SO

SIB

HDB

BSTS

S1HL

LPO
MPOL VLPO
MPOM

MPOC

M1

SFi

BAC

LSD

Cg2

PaAM
PaAP
Pe
StHy

3V

M2
Cg1

IG

SFO

TS

df

cc

BSTMPI

Tu

VP

AAV

Pir

Cl

DI

GI

S2

AIP

Figure 21

Bregma -0.80 mm

DEn

S1BF

VEn
CxA

LSS

CPu

IPACL

S1DZ

IPACM

MCPO

SID

BSTLP

BSTLI

BSTMPL

BSTMPM

S1FL

10

+15

+5

+5

-5

ec

10

-15
Bregma 0

-5

-10

Interaural 8.08 mm

rf

+10

0 Interaural

10

acp

lo

LGP

ic

st

LV

mfb

IVF

sm

LA

mch

D3V

df

cc

ox

M2

SCh

SO

LPO

AV

M1

SFi

MPA
MPOL VLH

StHy

PaAP

PVA

PT

LSD

MPOM

Pe

IG

Cg2

Cg1

SFO

vhc

TS

Pe

f
3V
PaAM

MPOC

cg

S1FL

SID

VP

AAV

AAD

IPACM

S1BF

LSS
VEn

CPu

CxA

IPACL

S1DZ

ACo
LOT

MCPO

BSTMPL

BSTMPI

BSTMPM

SIB
HDB

SIV

S1HL

Cl

GI

S2

AIP

DI

Figure 22

Bregma -0.92 mm

Pir

DEn

10

+15

+5

rf

+5

-5

ec

lo

10

-15
Bregma 0

-5

-10

Interaural 7.70 mm

+10

0 Interaural

10

ic

st

fi

mfb

sm

LV

cg

sm
PVA

MPO

MPA

SCh
ox

Re

PaAP

Pe

AM

AD

M1

LA

AHA

BSTMPL

SO

VLH

LH

SM

Rt

SIV

MeAD

MCPO

SIB

S1HL

AVDM

IAD AVVL

AMV

PT

SFO

M2

PC

IG

Cg2

Cg1

D3V

vhc

TS

PVA

3V

df

cc

LOT 2

AAD
AAV

IPACM
SID

LGP

S1FL

ACo

VEn

AStr

Pir

DI

GI

S2

AIP

Figure 23

Bregma -1.30 mm

DEn

Cl

S1BF

LSS

CPu

CxA

BMA

IPACL

S1DZ

10

+15

+5

+5

lo

-5

ec

10

-15
Bregma 0

-5

-10

Interaural 7.60 mm

rf

+10

0 Interaural

10

ic

st

mfb

fi

LV

sm

cg

Cir

sm

IG

PC

PT

ox

LA

AHA

AVVL

AD

M1

BSTMPL

VRe

SCh

PaAP

Re

AM

AMV

MPO

3V

PVA

CM
IAD

PVA

M2

Cg2

Cg1

D3V

vhc

TS

SFO

Pe

df

cc

SO

VLH

LH

SM

Rt

AVDM

SI

S1FL

MeAD

LOT

MCPO AAV

S1HL

IPACL

AStr

CPu

ACo

CxA

BMA

IPACM LSS
VEn
AAD

LGP

S1DZ

Pir

Figure 24

GI

S2

DI
AIP

Bregma -1.40 mm

DEn

Cl

S1BF

10

+15

+5

+5

-5

ec

10

-15
Bregma 0

-5

-10

Interaural 7.40 mm

rf

+10

0 Interaural

10

ic

st

fi

LV

mfb

VA

mt

cg

sox

PC

MD

sm

df

cc

3V
ox

RCh

Pe

CA3

AHC

AHA

ZI

AMV

AM

VRe

PT

PaAP

Re

IAM
Rh

PVA

D3V

vhc
SFO

TS

M2

DG

RSGb

RSA

IG

AD

M1

SO

SI

Rt

MeAD

MCPO

LH

VA

AVVL

AVDM

S1HL

LOT

AA

S1FL

ACo

S1BF

AStr

Cl

VEn

GI
DI

Figure 25

S2

S1

AIP

Bregma -1.60 mm

BLA DEn

CPu

CxA

CeC

IPAC

BMA

CeM

LGP

S1DZ

10

+15

+5

+5

ec

-5

10

-15
Bregma 0

-5

-10

Interaural 7.20 mm

rf

+10

0 Interaural

10

cst

ic
eml

fi

LV

LOT

st

al

opt

mfb

ns

sm

mt

VRe

Re

RCh

PaV

PaMP

AHC

PaLM
SPa

ZI

Sub

AVVL

S1HL

LH

VA

LDVL

AVDM

AD

M1

VM

PC

AM
AMV

PT

MHb

MD

3VPaDC

Rh

IAM

CM

PVA

M2

DG

RSGb

RSA

IG

D3V

cc

TS

Xi

Pe

df

AHP

IAD

PC

sox

cg

SO

BAOT

IPAC

ACo

BMA

CxA

CeL CeC

LGP

S1DZ

CeM

MeAD

SI

Rt

S1FL

DEn

Cl

S1

AIP

DI

GI

S2

Figure 26

Bregma -1.80 mm

VEn

BLA

AStr

LaDL

CPu

S1BF

10

+15

+5

+5

ec

-5

10

-15
Bregma 0

-5

-10

Interaural 7.12 mm

rf

+10

0 Interaural

10

cst

ic

st

iml

fi

LV

al

opt

mfb

ns

sm

sox

mt

cg

SPa

df

RSGb

dhc

cc

PT

RCh

Pe

PaV

Sub

PaDC
PaLM

ZI

M1

AD

VM

AHC

AHP

Re
VRe

PaMP

Xi

Rh

AM

IAD

PC

DG

MD

CA3

M2

MHb

DHC

IAM
AMV

CM

PVA

D3V

3V

RSA

IG

LH

VA

SO

AVVL
AVDM

LDVL

S1HL

SI

BAOT

MeAD

Rt

S1FL

ACo

BMA

IM

CxA

BLA

DEn

Cl

S1

Pir

AIP

S2

DI

GI

Figure 27

Bregma -1.88 mm

VEn

IPAC LaDL

CPu

S1BF

CeM CeL CeC

LGP

S1DZ

10

+15

+5

+5

-5

10

ec

-15
Bregma 0

-5

-10

Interaural 6.88 mm

rf

+10

0 Interaural

10

ic

cst

vaf

eml

aot

st

LV

fi

alv

opt

al

mfb

ns

sox

mt

iml

cg

PaMP

sm

CM

ME

VMHA

VA

ZI

VM

TC

AHC

Stg
AHP

ArcD
ArcM
ArcL

Pe

PC

CL

AD

CA3

M1

DG

PaPo

VRe

Sub

AM

MDM

SPa

Xi

Re

Rh

M2

LHb
MDL

MHb

PVA

IAM

3V

IG

RSGb

RSA

DHC

D3V

dhc

df

cc

SOR

AV

LDDM

LH

MeAD

SI

Rt

S1FL

MeAV

MGP

VPL

BAOT

Acc

VL

LDVL

S1HL

ACo

BMA

CeM

IM

CeC
CeL

LGP

S1DZ

CxA

DEn

S1

AIP

DI

GI

S2

Figure 28

Bregma -2.12 mm

Pir

VEn

BLA

IMG

LaDL

AStr

IPAC

CPu

S1BF

10

+15

+5

+5

-5

ec

10

-15
Bregma 0

-5

-10

Interaural 6.70 mm

rf

+10

0 Interaural

10

cst

ic

st

LV

eml

fi

alv

opt

al

ns

sox

mfb

iml

cg

sm

ArcD

mt

cc

ArcL

VM

S1Tr

BAOT

ACo

MeAV

LGP

BLV

DI

GI

S2

AIP

Figure 29

Bregma -2.30 mm

Pir

DEn
BLA BLP
VEn

IMG

AStr LaDL
I

IPAC

CPu

S1BF

PLCo CxA

BMA

CeC

CeL
CeM

S1DZ

Rt

MeAD

SI

VPL

MGP

VPM

LDVL

CA2

LH

SOR

VMHVL

TC

PaPo

ZI

VMHDM

AHP

VMHC

MEI MEE

Pe

A13
Stg

VRe

Sub

PC
VL

LDDM

CA3

CA1

M1

MDC
MDL CL

MDM

DA

Xi

Re

Rh

IAM

CM

IMD

DG

M2

LHb

MHb

DHC

IG

PV

ArcM

3V

RSA

RSGb

D3V

dhc

df

10

+15

+5

+5

lab

ec

-5

10

-15
Bregma 0

-5

-10

Interaural 6.44 mm

rf

+10

0 Interaural

10

MePD

cst

LV

st

ic

eml

fi

opt

alv

aot

sox

mfb

al

ns

scp

iml

sm

ArcD
ArcL

mt

cg

dhc

IG

RSGb

RSA

MEI
0

VRe

A13

MEE
1

Po

LH

SOR

VMHVL

ZI

VM

VL

S1Tr

MePV

CeM

ACo

IPAC

CPu

S1BF

PLCo

LaVL
DEn

DI

GI

S2

AIP

Figure 30

Bregma -2.56 mm

Pir

BLP
VEn

BLV

BLA

LaVM
AStr LaDL
CeL
CeC

LGP

BMA BMP

BSTIA

Rt

S1DZ

MeAD

VPL

MGP

VPM

LDVL

CA3

CL Ang

VMHC

ArcM

DMD

SubI

PC

CA2

LDDM

CA1

M1

TC
VMHDM

SubV

SubD

DA
Pe

Re

Rh

MDC

LHb

MDL
MDM
MDPL
CM

3V

IMD

PV

D3V

M2

PoDG
MHb DG

df cc DHC

10

+15

+5

+5

ec

lab

-5

10

-15
Bregma 0

-5

-10

Interaural 6.20 mm

rf

+10

0 Interaural

10

cst

ic

st

LV

fi

eml

opt

alv

sox

mfb

al

ns

scp

iml

cg

MEI
0

DMD

DA

A13

VRe

SubV

SubD

MDM

PeF

MEE

ArcL

VMHVL

ZI

VL

SOR

LH

MCLH

Po

CA3

CA2

LDDM

CA1

CL Ang

VM

SubI

MDC
MDL

LHb

PC

DG

M1

Pe VMHDM TC
VMHC

3V

Re

Rh

CM

IMD

MHb
PV

cc

M2

PoDG

RSGb

RSA

IG
dhc

D3V

df

ArcD

sm

ArcM

mt

VPM

MePV

MeAD

ACo

BMP
PLCo

BMA

LaVL

VEn
Pir

DEn

GI

LEnt

PRh

Ect

DI

S2

Figure 31

Bregma -2.80 mm

BLV

BLP

LaDL
LaVM
BLA

CeC

S1BF

CPu

AStr

IPAC
CeL

LGP

CeM

BSTIA
I

Rt

S1DZ

MePD

VPL

MGP

LDVL

S1Tr

10

+15

+5

+5

ec

AStr

-5

10

-15
Bregma 0

-5

-10

Interaural 5.86 mm

rf

+10

0 Interaural

10

st

st

LV

fi

ic

eml

opt

alv

sox

sm

D3V

VRe

Sub

MDL

MDC

MHb

MTu

Po

LDVL

CA3

CA2

S1Tr

MGP

VPM

SOR

MCLH

LH

ZID

VL

PeF

ZIV
SubI

TC

CL

LDDM

CA1

M1

LPMR

VM

PC

ArcM VMHVL

VMHDM

DMD

DA
Pe

M2

PoDG
LHbM
LHbL

A11

MEI MEE

ArcD

Re

Rh

CM

RSA

RSGb
IG

PVP

3V

Do

IMD

dhc

ArcL

df cc

DMC

MDM

mt

cg

VMHC

eml

scp

iml

hf

ml

ns
mfb

MePV

PLCo

BLP

Pir

VEn

DEn

S2

LEnt

PRh

Ect

AuV

AuD

Figure 32

Bregma -3.14 mm
5

BLV

BLA

LaVL

LaDL

CPu

S1BF

LaVM

CeC

BMP

CeL

LGP

BSTIA

Rt

S1DZ

PMCo BMA

MePD

VPL

10

+15

+5

+5

ec

-5

10

-15
Bregma 0

-5

-10

Interaural 5.70 mm

rf

+10

0 Interaural

10

fi

st

st

LV

ic

opt

eml

alv

sox

ns
mfb

eml

iml

ml

hf

ArcL

VMHC

MDL

MHb
sm

DMC

mt

scp

OPC

cg

MEI

M2

MEE
1

VMHVL

VMHDM

Te

LH

CA3

VPL

MePV

MePD

PMCo

MGP

ZIV

VPM

CA2

S1Tr

LDVL

MCLH

ZID
SubI

MTu

PeF

LDDM

Po

CA1

M1

LPMR

CL

VM

TC

DMV

DMD

PH

A11

VRe

ArcM

ArcD

Pe

3V

Re

CM
imvc

PC

MDC

MDM

IMD

PoDG
LHbM LHbL

DG

PVP

D3V

RSA

RSGb

IG

cc
dhc

FC

df

PLCo

BLA
BMP

S1BF

BLP

Pir

VEn

LEnt

PRh

Ect

AuV

Au1

AuD

Figure 33

Bregma -3.30 mm
5

BLV

S2

LaVL DEn

LaVM

LaDL

CPu

CPu

AStr
CeC

CeL

LGP

BSTIA

Rt

S1DZ

10

+15

+5

+5

ec

ic

-5

LV

LV

10

-15
Bregma 0

-5

-10

Interaural 5.40 mm

rf

+10

0 Interaural

10

st

ic

st

fi

opt

alv

eml

sox

mfb

ns

ml

scp

iml

hf

mt

cg

fr

3V

PeF

VM

ArcL

LH

SubI

CL

Te
VMHC
VMHVL

DMD

PH

A11

VPPC

DG

STh

ZIV

BSTIA

Rt

VLG

AHiAL

MePD

VPL

DLG

CA3

CA2

PMCo

LDVL

VPM

S1Tr

ZID

Po

CA1

LPMR

PoDG

PC

MDL

LHbL

OPC

MDM

InfS

CM

PVP

MHb

dhc

M2 M1

LHbM

RSA

RSGb
IG

D3V

cc

ArcM

DMV
ArcD

Pe

IMD

sm

df

BLV

LaVL

VEn

DEn

S2

Pir

LEnt

PRh

Ect

AuV

Au1

AuD

Figure 34

Bregma -3.60 mm

BLP

PLCo

BMP

LaDL

CPu

LaVM

AStr

S1BF

10

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