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Rat Brain Atlas
Rat Brain Atlas
Rat Brain Atlas
+15
+5
+5
rf
ec
-5
10
-15
Bregma 0
-5
-10
Interaural 9.20 mm
+10
0 Interaural
10
lo
mfba
aca
cg
mfbb
SI
ZL
LV
2n
VDB
MS
Ld
cc
SHi
IG
Cg2
Cg1
LSV
PLd
HDB
LSI
LSD
M2
ICj
SIB
VP
BSTL
BSTMA
M1
Tu
IPAC
CB
CPu
LSS
S1FL
Cl
Pir
DEn
S1DZ
S2
DI
GI
Figure 17
Bregma 0.20 mm
AIP
S1ULp
10
+15
+5
+5
ec
-5
10
-15
Bregma 0
-5
-10
Interaural 8.74 mm
rf
+10
0 Interaural
10
lo
mfba
acp
mfba
ic
mfbb
acp
st
LV
cg
ZL
ac
LSD
AVPe
MPOL
VMPO
ox
LSV
M1
Al
BSTMA
LSI
LPO
HDB
SIB
BSTMV BSTLP
BSTLV
StA
ADP
PS
Fu
SFi
IG
Cg2
MnPO
Pe
M2
Cg1
MS
MPA 3V
df
cc
VP
LGP
Tu
VP
ICj
MCPO
IPACM
BSTLJ
BSTLD
S1HL
IPACL
CPu
S1FL
LSS
S1DZ
CxA
VEn
Pir
S1BF
Cl
AIP
DI
GI
S2
Figure 18
Bregma -0.26 mm
DEn
10
+15
+5
rf
+5
ec
-5
10
-15
Bregma 0
-5
-10
Interaural 8.70 mm
+10
0 Interaural
10
lo
4
5
6b
6a
mfba
acp
mfba
LGP
ic
mfbb
st
LV
cg
pcf
StA
acp
MPA
ac
IG
MPOL
ADP
AVPe
Pe
VMPO
ox
3V
SFi
Cg2
M1
LSV
LSI
LPO
VLPO
PS
HDB
VP
BSTLJ
BSTLD
BSTLP
S1HL
SIB
Fu
BSTMV BSTLV
BSTMA
LSD
M2
Cg1
MnPO
df
cc
Tu
VP
ICj
IPACL
CPu
S1FL
MCPO
IPACM
VEn
LSS
S1DZ
CxA
Cl
S1BF
AIP
DI
GI
S2
Figure 19
Bregma -0.30 mm
Pir
DEn
10
+15
+5
rf
+5
-5
10
-15
Bregma 0
-5
-10
Interaural 8.60 mm
+10
0 Interaural
10
ec
lo
LGP
mfba
acp
mfba
ic
mfbb
st
LV
cg
df
cc
LSD
SFi
IG
3V
MPOL
Pe MPA
VMPO
ox
M2
Cg2
Cg1
MnPO
ADP
AVPe
StA
ac
CST
M1
HDB
LPO
VLPO
PS
BSTMV
BSTMA
LSV
LSI
S1HL
Tu
VP
ICj
MCPO
VP
3
4
CxA
LSS
Pir
VEn
S1DZ
IPACL
CPu
S1FL
BSTLJ
BSTLP
BSTLI
IPACM
BSTLV
SIB
S1BF
AIP
DI
GI
S2
Figure 20
Bregma -0.40 mm
Cl
DEn
10
+15
+5
+5
-5
ec
10
-15
Bregma 0
-5
-10
Interaural 8.20 mm
rf
+10
0 Interaural
10
lo
acp
mfba
LGP
B
ic
st
mfbb
LV
cg
APF
vhc
PDP mch
sm
pcf
ox
MPA
SO
SIB
HDB
BSTS
S1HL
LPO
MPOL VLPO
MPOM
MPOC
M1
SFi
BAC
LSD
Cg2
PaAM
PaAP
Pe
StHy
3V
M2
Cg1
IG
SFO
TS
df
cc
BSTMPI
Tu
VP
AAV
Pir
Cl
DI
GI
S2
AIP
Figure 21
Bregma -0.80 mm
DEn
S1BF
VEn
CxA
LSS
CPu
IPACL
S1DZ
IPACM
MCPO
SID
BSTLP
BSTLI
BSTMPL
BSTMPM
S1FL
10
+15
+5
+5
-5
ec
10
-15
Bregma 0
-5
-10
Interaural 8.08 mm
rf
+10
0 Interaural
10
acp
lo
LGP
ic
st
LV
mfb
IVF
sm
LA
mch
D3V
df
cc
ox
M2
SCh
SO
LPO
AV
M1
SFi
MPA
MPOL VLH
StHy
PaAP
PVA
PT
LSD
MPOM
Pe
IG
Cg2
Cg1
SFO
vhc
TS
Pe
f
3V
PaAM
MPOC
cg
S1FL
SID
VP
AAV
AAD
IPACM
S1BF
LSS
VEn
CPu
CxA
IPACL
S1DZ
ACo
LOT
MCPO
BSTMPL
BSTMPI
BSTMPM
SIB
HDB
SIV
S1HL
Cl
GI
S2
AIP
DI
Figure 22
Bregma -0.92 mm
Pir
DEn
10
+15
+5
rf
+5
-5
ec
lo
10
-15
Bregma 0
-5
-10
Interaural 7.70 mm
+10
0 Interaural
10
ic
st
fi
mfb
sm
LV
cg
sm
PVA
MPO
MPA
SCh
ox
Re
PaAP
Pe
AM
AD
M1
LA
AHA
BSTMPL
SO
VLH
LH
SM
Rt
SIV
MeAD
MCPO
SIB
S1HL
AVDM
IAD AVVL
AMV
PT
SFO
M2
PC
IG
Cg2
Cg1
D3V
vhc
TS
PVA
3V
df
cc
LOT 2
AAD
AAV
IPACM
SID
LGP
S1FL
ACo
VEn
AStr
Pir
DI
GI
S2
AIP
Figure 23
Bregma -1.30 mm
DEn
Cl
S1BF
LSS
CPu
CxA
BMA
IPACL
S1DZ
10
+15
+5
+5
lo
-5
ec
10
-15
Bregma 0
-5
-10
Interaural 7.60 mm
rf
+10
0 Interaural
10
ic
st
mfb
fi
LV
sm
cg
Cir
sm
IG
PC
PT
ox
LA
AHA
AVVL
AD
M1
BSTMPL
VRe
SCh
PaAP
Re
AM
AMV
MPO
3V
PVA
CM
IAD
PVA
M2
Cg2
Cg1
D3V
vhc
TS
SFO
Pe
df
cc
SO
VLH
LH
SM
Rt
AVDM
SI
S1FL
MeAD
LOT
MCPO AAV
S1HL
IPACL
AStr
CPu
ACo
CxA
BMA
IPACM LSS
VEn
AAD
LGP
S1DZ
Pir
Figure 24
GI
S2
DI
AIP
Bregma -1.40 mm
DEn
Cl
S1BF
10
+15
+5
+5
-5
ec
10
-15
Bregma 0
-5
-10
Interaural 7.40 mm
rf
+10
0 Interaural
10
ic
st
fi
LV
mfb
VA
mt
cg
sox
PC
MD
sm
df
cc
3V
ox
RCh
Pe
CA3
AHC
AHA
ZI
AMV
AM
VRe
PT
PaAP
Re
IAM
Rh
PVA
D3V
vhc
SFO
TS
M2
DG
RSGb
RSA
IG
AD
M1
SO
SI
Rt
MeAD
MCPO
LH
VA
AVVL
AVDM
S1HL
LOT
AA
S1FL
ACo
S1BF
AStr
Cl
VEn
GI
DI
Figure 25
S2
S1
AIP
Bregma -1.60 mm
BLA DEn
CPu
CxA
CeC
IPAC
BMA
CeM
LGP
S1DZ
10
+15
+5
+5
ec
-5
10
-15
Bregma 0
-5
-10
Interaural 7.20 mm
rf
+10
0 Interaural
10
cst
ic
eml
fi
LV
LOT
st
al
opt
mfb
ns
sm
mt
VRe
Re
RCh
PaV
PaMP
AHC
PaLM
SPa
ZI
Sub
AVVL
S1HL
LH
VA
LDVL
AVDM
AD
M1
VM
PC
AM
AMV
PT
MHb
MD
3VPaDC
Rh
IAM
CM
PVA
M2
DG
RSGb
RSA
IG
D3V
cc
TS
Xi
Pe
df
AHP
IAD
PC
sox
cg
SO
BAOT
IPAC
ACo
BMA
CxA
CeL CeC
LGP
S1DZ
CeM
MeAD
SI
Rt
S1FL
DEn
Cl
S1
AIP
DI
GI
S2
Figure 26
Bregma -1.80 mm
VEn
BLA
AStr
LaDL
CPu
S1BF
10
+15
+5
+5
ec
-5
10
-15
Bregma 0
-5
-10
Interaural 7.12 mm
rf
+10
0 Interaural
10
cst
ic
st
iml
fi
LV
al
opt
mfb
ns
sm
sox
mt
cg
SPa
df
RSGb
dhc
cc
PT
RCh
Pe
PaV
Sub
PaDC
PaLM
ZI
M1
AD
VM
AHC
AHP
Re
VRe
PaMP
Xi
Rh
AM
IAD
PC
DG
MD
CA3
M2
MHb
DHC
IAM
AMV
CM
PVA
D3V
3V
RSA
IG
LH
VA
SO
AVVL
AVDM
LDVL
S1HL
SI
BAOT
MeAD
Rt
S1FL
ACo
BMA
IM
CxA
BLA
DEn
Cl
S1
Pir
AIP
S2
DI
GI
Figure 27
Bregma -1.88 mm
VEn
IPAC LaDL
CPu
S1BF
LGP
S1DZ
10
+15
+5
+5
-5
10
ec
-15
Bregma 0
-5
-10
Interaural 6.88 mm
rf
+10
0 Interaural
10
ic
cst
vaf
eml
aot
st
LV
fi
alv
opt
al
mfb
ns
sox
mt
iml
cg
PaMP
sm
CM
ME
VMHA
VA
ZI
VM
TC
AHC
Stg
AHP
ArcD
ArcM
ArcL
Pe
PC
CL
AD
CA3
M1
DG
PaPo
VRe
Sub
AM
MDM
SPa
Xi
Re
Rh
M2
LHb
MDL
MHb
PVA
IAM
3V
IG
RSGb
RSA
DHC
D3V
dhc
df
cc
SOR
AV
LDDM
LH
MeAD
SI
Rt
S1FL
MeAV
MGP
VPL
BAOT
Acc
VL
LDVL
S1HL
ACo
BMA
CeM
IM
CeC
CeL
LGP
S1DZ
CxA
DEn
S1
AIP
DI
GI
S2
Figure 28
Bregma -2.12 mm
Pir
VEn
BLA
IMG
LaDL
AStr
IPAC
CPu
S1BF
10
+15
+5
+5
-5
ec
10
-15
Bregma 0
-5
-10
Interaural 6.70 mm
rf
+10
0 Interaural
10
cst
ic
st
LV
eml
fi
alv
opt
al
ns
sox
mfb
iml
cg
sm
ArcD
mt
cc
ArcL
VM
S1Tr
BAOT
ACo
MeAV
LGP
BLV
DI
GI
S2
AIP
Figure 29
Bregma -2.30 mm
Pir
DEn
BLA BLP
VEn
IMG
AStr LaDL
I
IPAC
CPu
S1BF
PLCo CxA
BMA
CeC
CeL
CeM
S1DZ
Rt
MeAD
SI
VPL
MGP
VPM
LDVL
CA2
LH
SOR
VMHVL
TC
PaPo
ZI
VMHDM
AHP
VMHC
MEI MEE
Pe
A13
Stg
VRe
Sub
PC
VL
LDDM
CA3
CA1
M1
MDC
MDL CL
MDM
DA
Xi
Re
Rh
IAM
CM
IMD
DG
M2
LHb
MHb
DHC
IG
PV
ArcM
3V
RSA
RSGb
D3V
dhc
df
10
+15
+5
+5
lab
ec
-5
10
-15
Bregma 0
-5
-10
Interaural 6.44 mm
rf
+10
0 Interaural
10
MePD
cst
LV
st
ic
eml
fi
opt
alv
aot
sox
mfb
al
ns
scp
iml
sm
ArcD
ArcL
mt
cg
dhc
IG
RSGb
RSA
MEI
0
VRe
A13
MEE
1
Po
LH
SOR
VMHVL
ZI
VM
VL
S1Tr
MePV
CeM
ACo
IPAC
CPu
S1BF
PLCo
LaVL
DEn
DI
GI
S2
AIP
Figure 30
Bregma -2.56 mm
Pir
BLP
VEn
BLV
BLA
LaVM
AStr LaDL
CeL
CeC
LGP
BMA BMP
BSTIA
Rt
S1DZ
MeAD
VPL
MGP
VPM
LDVL
CA3
CL Ang
VMHC
ArcM
DMD
SubI
PC
CA2
LDDM
CA1
M1
TC
VMHDM
SubV
SubD
DA
Pe
Re
Rh
MDC
LHb
MDL
MDM
MDPL
CM
3V
IMD
PV
D3V
M2
PoDG
MHb DG
df cc DHC
10
+15
+5
+5
ec
lab
-5
10
-15
Bregma 0
-5
-10
Interaural 6.20 mm
rf
+10
0 Interaural
10
cst
ic
st
LV
fi
eml
opt
alv
sox
mfb
al
ns
scp
iml
cg
MEI
0
DMD
DA
A13
VRe
SubV
SubD
MDM
PeF
MEE
ArcL
VMHVL
ZI
VL
SOR
LH
MCLH
Po
CA3
CA2
LDDM
CA1
CL Ang
VM
SubI
MDC
MDL
LHb
PC
DG
M1
Pe VMHDM TC
VMHC
3V
Re
Rh
CM
IMD
MHb
PV
cc
M2
PoDG
RSGb
RSA
IG
dhc
D3V
df
ArcD
sm
ArcM
mt
VPM
MePV
MeAD
ACo
BMP
PLCo
BMA
LaVL
VEn
Pir
DEn
GI
LEnt
PRh
Ect
DI
S2
Figure 31
Bregma -2.80 mm
BLV
BLP
LaDL
LaVM
BLA
CeC
S1BF
CPu
AStr
IPAC
CeL
LGP
CeM
BSTIA
I
Rt
S1DZ
MePD
VPL
MGP
LDVL
S1Tr
10
+15
+5
+5
ec
AStr
-5
10
-15
Bregma 0
-5
-10
Interaural 5.86 mm
rf
+10
0 Interaural
10
st
st
LV
fi
ic
eml
opt
alv
sox
sm
D3V
VRe
Sub
MDL
MDC
MHb
MTu
Po
LDVL
CA3
CA2
S1Tr
MGP
VPM
SOR
MCLH
LH
ZID
VL
PeF
ZIV
SubI
TC
CL
LDDM
CA1
M1
LPMR
VM
PC
ArcM VMHVL
VMHDM
DMD
DA
Pe
M2
PoDG
LHbM
LHbL
A11
MEI MEE
ArcD
Re
Rh
CM
RSA
RSGb
IG
PVP
3V
Do
IMD
dhc
ArcL
df cc
DMC
MDM
mt
cg
VMHC
eml
scp
iml
hf
ml
ns
mfb
MePV
PLCo
BLP
Pir
VEn
DEn
S2
LEnt
PRh
Ect
AuV
AuD
Figure 32
Bregma -3.14 mm
5
BLV
BLA
LaVL
LaDL
CPu
S1BF
LaVM
CeC
BMP
CeL
LGP
BSTIA
Rt
S1DZ
PMCo BMA
MePD
VPL
10
+15
+5
+5
ec
-5
10
-15
Bregma 0
-5
-10
Interaural 5.70 mm
rf
+10
0 Interaural
10
fi
st
st
LV
ic
opt
eml
alv
sox
ns
mfb
eml
iml
ml
hf
ArcL
VMHC
MDL
MHb
sm
DMC
mt
scp
OPC
cg
MEI
M2
MEE
1
VMHVL
VMHDM
Te
LH
CA3
VPL
MePV
MePD
PMCo
MGP
ZIV
VPM
CA2
S1Tr
LDVL
MCLH
ZID
SubI
MTu
PeF
LDDM
Po
CA1
M1
LPMR
CL
VM
TC
DMV
DMD
PH
A11
VRe
ArcM
ArcD
Pe
3V
Re
CM
imvc
PC
MDC
MDM
IMD
PoDG
LHbM LHbL
DG
PVP
D3V
RSA
RSGb
IG
cc
dhc
FC
df
PLCo
BLA
BMP
S1BF
BLP
Pir
VEn
LEnt
PRh
Ect
AuV
Au1
AuD
Figure 33
Bregma -3.30 mm
5
BLV
S2
LaVL DEn
LaVM
LaDL
CPu
CPu
AStr
CeC
CeL
LGP
BSTIA
Rt
S1DZ
10
+15
+5
+5
ec
ic
-5
LV
LV
10
-15
Bregma 0
-5
-10
Interaural 5.40 mm
rf
+10
0 Interaural
10
st
ic
st
fi
opt
alv
eml
sox
mfb
ns
ml
scp
iml
hf
mt
cg
fr
3V
PeF
VM
ArcL
LH
SubI
CL
Te
VMHC
VMHVL
DMD
PH
A11
VPPC
DG
STh
ZIV
BSTIA
Rt
VLG
AHiAL
MePD
VPL
DLG
CA3
CA2
PMCo
LDVL
VPM
S1Tr
ZID
Po
CA1
LPMR
PoDG
PC
MDL
LHbL
OPC
MDM
InfS
CM
PVP
MHb
dhc
M2 M1
LHbM
RSA
RSGb
IG
D3V
cc
ArcM
DMV
ArcD
Pe
IMD
sm
df
BLV
LaVL
VEn
DEn
S2
Pir
LEnt
PRh
Ect
AuV
Au1
AuD
Figure 34
Bregma -3.60 mm
BLP
PLCo
BMP
LaDL
CPu
LaVM
AStr
S1BF
10