Programme EMBO course NMR Basel 2013

Saturday Sunday Monday Tuesday Wednesday Thursday Friday Saturday

20.7. 21.7. 22.7. 23.7. 24.7. 25.7. 26.7. 27.7.
9:00 J-couplings, NMR structure RDC/Relaxation,
Cross correlated Projection NMR + NMR of nucleic Structure
Vuister calculation, Nilges Grzesiek, Tjandra
relaxation, RDCs NMR of membrane acids, Sklenar Validation,
dynamics, proteins, Hiller Vuister
Griesinger
10:15 Coffee (room 108) Coffee (room 108) Coffee (room 108) Coffee (room 108) Coffee (room 108) Coffee (room 108) Coffee (room
Group Foto 108)
10:45 RDCs, Dynamics, NMR structure Deuteration, Meet instructors Ligand binding, Large proteins, Practical
Blackledge calculation, Nietlispach and tutors with isotope filters, Riek P11
Gntert your data and Mott Structure
questions validation
12:00 Lunch (room 108) Lunch (Mensa) Lunch (Mensa) Lunch boxes Lunch (Mensa) Lunch (Mensa) Lunch (Hotel
Rochat)
13:30 Introduction Practicals Practicals Practicals Excursion Practicals 13:00-15:00
Presentation of P1, P3 P1, P3 P2, P5 P7, P8 Practicals
Hike to Gempen
participants P12-P20
Rhine swimming for
forming of groups very experienced
14:30-15:45 swimmers

Past+Future of
NMR, Griesinger
16:00 Coffee (Gallery Coffee (room 108) Coffee (room 108) Coffee (room 108) Coffee (room 108) 15:00-15:30
Pharmazentrum) Coffee (room 108)
16:30 Heteron. NMR: Practicals Practicals Practicals Practicals 15:30-17:30
16:15-17:30 basics, P2, P4 P4, P6 P5, P6 P7, P8 Practicals
Sattler P12-P20
17:45-19:00 phase
cycle, gradients,
Nietlispach
19:00 Dinner (room 108) Dinner (room 108) Dinner (room 108) Dinner (room 108) Free Dinner (room 108) 17:30
Round Table
20:15 Data processing, 20:00 X nuclei direct Fast NMR, Free Practicals Course Dinner
Delaglio Practicals detection and Brutscher P12-P20 Leave 19:00 for
P9, P10 paramagnetic Restaurant
NMR, Felli Rhyschnzli,
Elssserstrasse 17

21:15 Poster Session 21:15 drinks+snacks drinks+snacks Free

with drinks+snacks Practicals
P9, P10
7/20/13
 Practicals EMBO course NMR Basel 2013
Description Instructors Room Day Time # groupsduration Rooms and locations Resposible
P1a NMR basics: heteronuclear pulse calibration, Simon, Sass AVIII 800 cryo Sun 13:30 1 2:30 NMR:
proton T2, etc. (Frauenspital) Mon 13:30
P1b Hiller, Burmann, Griesinger AVIII 700 cryo Sun 13:30 1 2:30 AVIII 600 (Frauenspital) Sass/Skora
Mon 13:30 TopSpin 2.1 Juergen.Sass@unibas.ch,
++41 61 267 2263
lukasz.skora@novartis.com,
++41 76 773 2420
P1c Nietlispach, Hussinger AVIII 600 Sun 13:30 1 2:30 AVIII 600 (Chemie) Hussinger
(Chemie) Mon 13:30 TopSpin 3.X daniel.haeussinger@unibas.ch
, ++41 61 267 1159
P1d Sattler, Skora, Tjandra AVIII 600 Sun 13:30 1 2:30 AVIII 700 cryo Hiller/Burmann
(Frauenspital) Mon 13:30 TopSpin 3.X sebastian.hiller@unibas.ch,
++41 61 267 2082
bjoern.burmann@unibas.ch,
++41 61 267 2096
P2a NMR triple resonance: exp setup, acquisition Simon, Sass AVIII 800 cryo Sun 16:30 1 2:30 AVIII 800 cryo Sass/Skora
times, deuteration, cryoprobe etc. (Frauenspital) Tue 13:30 (Frauenspital) Juergen.Sass@unibas.ch,
TopSpin 2.1 ++41 61 267 2263
lukasz.skora@novartis.com,
++41 76 773 2420
P2b Hiller, Burmann, Griesinger AVIII 700 cryo Sun 16:30 1 2:30
Tue 13:30
P2c Nietlispach, Hussinger AVIII 600 Sun 16:30 1 2:30
(Chemie) Tue 13:30
P2d Sattler, Skora, Tjandra AVIII 600 Sun 16:30 1 2:30
(Frauenspital) Tue 13:30 Rooms and locations Resposible
P3 ANALYSIS/CCPN [AZARA?] Mott BZ R105 Sun 13:30 4 Computer:
Mon 13:30
P4 NMRPipe processing Delaglio, Vuister, Dames BZ R105 Sun 16:30 4 2:30 Kiwi Sass
Mon 16:30 21 PCs Juergen.Sass@unibas.ch,
++41 61 267 2263
P5 ARIA/CNS Nilges BZ R105 Tue 13:30 4 2:30 Mango Sass
Tue 16:30 17 PCs Juergen.Sass@unibas.ch,
++41 61 267 2263
P6 CYANA Gntert Kiwi Mon 16:30 4 2:30 BZ R105 Sass
Tue 16:30 23 PCs Juergen.Sass@unibas.ch,
++41 61 267 2263

P7 RDCs: practical NMR Grzesiek AVIII 600 Thu 13:30 4 2:30

Thu 16:30
P8 RDCs, 15N relaxation: data analysis Tjandra Kiwi Thu 13:30 4 2:30
Thu 16:30
P9 RDCs, 15N relaxation software Blackledge BZ R105 Sun 20:15 4 1:15
MODULE, TENSOR Sun 21:15
P10 TALOS, RDCs, MFR Delaglio Kiwi Sun 20:15 4 1:15
Sun 21:15
P11 Structure validation Vuister BZ R105 Sat 10:45 8 1:30
P12 Sparky Jonker Kiwi Thu TBA 2:00
Fri
P13 Structure Calculation RNA Jonker Kiwi Thu TBA 2:00
Fri
P14 WeNMR Jonker Kiwi Thu TBA 2:00
Fri
P15 NMRView Dames BZ R105 or Mango Thu TBA 2:00
Fri
P16 Advanced NMR+calculation: PREs Simon BZ R105 or Mango Thu TBA 2:00
Fri
P17 Haddock Mott BZ R105 or Mango Thu TBA 2:00
Fri
P18 Build HNCO pulse sequence from scratch Grzesiek, Tjandra, Skora AVIII 600 Thu TBA 2:00
Fri
P19 Advanced NMR (large proteins) Riek AVIII 800 cryo Fri 13:30 2:00
16:30
P20 APSY-NMR Hiller AVIII 700 cryo Thu TBA 2:00
Fri

P1-P11 done by everybody 7/20/13

P12-P20 optional 3 out of 9
 Practical Schedule per Group

Sunday Monday Tuesday Thursday Friday Saturday

Start 13:30 16:30 20:00 21:15 13:30 16:30 13:30 16:30 13:30 16:30 20:00 13:00 15:30 10:45
End 16:00 19:00 21:15 22:30 16:00 19:00 16:00 19:00 16:00 19:00 22:30 15:00 17:30 12:15

G1-G4 P1a-P1d P2a-P2d P9 P10 P3 P4 P5 P6 P7 P8 P12-P20 P12-P20 P12-P20 P11

G5-G8 P3 P4 P10 P9 P1a-P1d P6 P2a-P2d P5 P8 P7

G1-G8 groups of ~4 students, defined on Saturday, based on common level of knowledge

7/20/13