CLUSTAL W (1.

83) multiple sequence alignment

4Jawa ------------------------------------------------------------
7Jawa ------------------------------------------------------------
5Jawa ------------------------------------------------------------
Jawa ------------------------------------------------------------
Sunda ------------------------------------------------------------
3Jawa ------------------------------------------------------------
2Jawa ------------------------------------------------------------
2Sunda ------------------------------------------------------------
Manado ------------------------------------------------------------
2Padang ------------------------------------------------------------
Tengger-Jawa ------------------------------------------------------------
Padang ------------------------------------------------------------
CRS ------------------------------------------------------------
Cina ------------------------------------------------------------
6Jawa ------------------------------------------------------------
Rahman CCACCTTCTTCGACCCAGACGGAGGAGGGGACCCTATTCTATACCAACACCTATTCTGAT

4Jawa ------------------------------------------------------------
7Jawa ------------------------------------------------------------
5Jawa ------------------------------------------------------------
Jawa ------------------------------------------------------------
Sunda ------------------------------------------------------------
3Jawa ------------------------------------------------------------
2Jawa ------------------------------------------------------------
2Sunda ------------------------------------------------------------
Manado ------------------------------------------------------------
2Padang ------------------------------------------------------------
Tengger-Jawa ------------------------------------------------------------
Padang ------------------------------------------------------------
CRS ------------------------------------------------------------
Cina ------------------------------------------------------------
6Jawa ------------------------------------------------------------
Rahman TTTTTGGCCACCCCGAAGTTTATATTCTTATCCTGCCAGGCTTCGGAATAATTTCCCATA

4Jawa ------------------------------------------------------------
7Jawa ------------------------------------------------------------
5Jawa ------------------------------------------------------------
Jawa ------------------------------------------------------------
Sunda ------------------------------------------------------------
3Jawa ------------------------------------------------------------
2Jawa ------------------------------------------------------------
2Sunda ------------------------------------------------------------
Manado ------------------------------------------------------------
2Padang ------------------------------------------------------------
Tengger-Jawa ------------------------------------------------------------
Padang ------------------------------------------------------------
CRS ------------------------------------------------------------
Cina ------------------------------------------------------------
6Jawa ------------------------------------------------------------
Rahman TTGTAACTTACTACTCCGGAAAAAAAGAACCATTCGGATATATAGGTATGGTCTGAGCAA

4Jawa ------------------------------------------------------------
7Jawa ------------------------------------------------------------
5Jawa ------------------------------------------------------------
Jawa ------------------------------------------------------------
Sunda ------------------------------------------------------------
3Jawa ------------------------------------------------------------
2Jawa ------------------------------------------------------------
2Sunda ------------------------------------------------------------
Manado ------------------------------------------------------------
2Padang ------------------------------------------------------------
Tengger-Jawa ------------------------------------------------------------
Padang ------------------------------------------------------------
CRS ------------------------------------------------------------
Cina ------------------------------------------------------------
6Jawa ------------------------------------------------------------
Rahman TAATATCAATTGGTTTCTTAGGGTTTATTGTGTGAGCACACCATATATTTACAGTAGGAA

4Jawa ------------------------------------TTCTAATTTAAACTATTCTCTG-T
7Jawa ------------------------------------TTCTAATTTAAACTATTCTCTG-T
5Jawa ------------------------------------TTCTAATTTAAACTATTCTCT-GT
Jawa ------------------------------------------------------------
Sunda ------------------------------------------------------------
3Jawa ------------------------------------------------------------
2Jawa ------------------------------------------------------------
2Sunda ------------------------------------------------------------
Manado -----------------------------------------------------------T
2Padang -----------------------------------------------------------T
Tengger-Jawa -----------------------------------------------------------T
Padang -----------------------------------------------------------T
CRS -----------------------------------------------------------T
Cina -------------------------------------TCTAATTTAAACTATTCTCTG-T
6Jawa ------------------------------------TTCTAATTTAAACTATTCTCTG-T
Rahman TGGACGTAGACACACGAGCCTATTTCACCTGCGCTACCATAATCATCGCTATTCCCAACA

4Jawa TCTTTCATGGGGA-AGCAGATTTGG---GTACCACCCAAG---TATTGACTCACCCATCA
7Jawa TCTTTCATGGGGA-AGCAGATTTGG---GTACCACCCAAG---TATTGACTCACCCATCA
5Jawa TCTTTCATGGGGA-AGCAGATTTGG---GTACCACCCAAG---TATTGACTCACCCATCA
Jawa ---TTCATGGGGA-AGCAGATTTGG---GTACCACCCAAG---TATTGACTCACCCATCA
Sunda ---TTCATGGGGA-AGCAGATTTGG---GTACCACCCAAG---TATTGACTCACCCATCA
3Jawa ---TTCATGGGGA-AGCAGATTTGG---GTACCACCCAAG---TATTGATTCACCCATCA
2Jawa ---TTCATGGGGA-AGCAGATTTGG---GTACCACCCAAG---TATTGACTCACCCATCA
2Sunda ---TTCATGGGGA-AGCAGATTTGG---GTACCACCCAAG---TATTGACTCACCCATCA
Manado TCTTTCATGGGGA-AGCAGATTTGG---GTACCACCCAAG---TATTGACTCACCCATCA
2Padang TCTTTCATGGGGA-AGCAGATTTGG---GTACCACCCAAG---TATTGACTCACCCATCA
Tengger-Jawa TCTTTCATGGGGA-AGCAGATTTGG---GTACCACCCAAG---TATTGACTCACCCATCA
Padang TCTTTCATGGGGA-AGCAGATTTGG---GTACCACCCAAG---TATTGACTCACCCATCA
CRS TCTTTCATGGGGA-AGCAGATTTGG---GTACCACCCAAG---TATTGACTCACCCATCA
Cina TCTTTCATGGGGA-AGCAGATTTGG---GTACCACCCAAG---TATTGACTCACCCATCA
6Jawa TCTTTCATGGGGA-AGCAGATTTGG---GTACCACCCAAG---TATTGACTCACCCATCA
Rahman GCGTCAAAGTATTTAGCTGACTCGCTACACTCCACGGAAGCAATATGAAGTGATCTGCTG
* * * *** ** * * **** *** *** * * * *

4Jawa ACAACCGCTATGTATTTCGTACATTACTGCCAGCCACCATGAATATT-------GTACGG
7Jawa ACAACCGCTATGTATTTCGTACATTACTGCCAGCCACCATGAATATT-------GTACGG
5Jawa ACAACCGCTATGTATTTCGTACATTACTGCCAGCCACCATGAATATT-------GTACGG
Jawa ACAACCGCTATGTATTTCGTACATTACTGCCAGCCACCATGAATATT-------GTACAG
Sunda ACAACCGCTATGTATTTCGTACATTACTGCCAGCCACCATGAATATT-------GTACGG
3Jawa ACAACCGCTATGTATTTCGTACATTACTGCCAGCCACCATGAATATT-------GTACGG
2Jawa ACAACCGCTATGTATTTCGTACATTACTGCCAGCCACCATGAATATT-------GTACGG
2Sunda ACAACCGCTATGTATTTCGTACATTACTGCCAGCCACCATGAATATT-------GTACGG
Manado ACAACCGCTATGTATTTCGTACATTACTGCCAGCCACCATGAATATT-------GTACGG
2Padang ACAACCGCTATGTATTTCGTACATTACTGCCAGCCACCATGAATATT-------GTACGG
Tengger-Jawa ACAACCGCTATGTATTTCGTACATTACTGCCAGCCACCATGAATATT-------GTACGG
Padang ACAACCGCTATGTATTTCGTACATTACTGCCAGCCACCATGAATATT-------GTACGG
CRS ACAACCGCTATGTATTTCGTACATTACTGCCAGCCACCATGAATATT-------GTACGG
Cina ACAACCGCTATGTATTTCGTACATTACTGCCAGCCACCATGAATATT-------GTACGG
6Jawa ACAACCGCTATGTATTTCGTACATTACTGCCAGCCACCATGAATATT-------GTACGG
Rahman CAGTACTCTGAGCCCTAGGTTCATTTTCTTC--TCACTGTAGGTGGCCTAACCGGCATTG
* ** * * ** **** * *** * * * * *

4Jawa TACCA-TAAATACTTGACCACCTGTAGTACATAAAAACTCAATCCACATCAAAACCCCCT
7Jawa TACCA-TAAATACTTGACCACCTGTAGTACATAAAAACTCAATCCACATCAAAACCCCCT
5Jawa TACCA-TAAATACTTGACCACCTGTAGTACATAAAAACCCAATCCACATCAAAACCCCCT
Jawa TACCA-TAAATACTCGACTACCTGTAGTACATAAAAACCCAACCCACATCAAAACCCCCT
Sunda TACCA-TAAATACTTGACCACCTGTAGTACATAAAAACCCAATCCACATCAAAACCCCCT
3Jawa TACCA-TAAATACTTGACCACCTGTAGTACATAAAAACCCAATCCACATCAAACCCCCCC
2Jawa TACCA-TAAATACTTGACCACCTGTAGTACATAAAAACCCAATCCACATCAAAACCCCCT
2Sunda TACCA-TAAATACTTGACCACCTGTAGTACATAAAAACCCAATCCACATCAAAACCCCCT
Manado TACCA-TAAATACTTGACCACCTGTAGTACATAAAAACCCAATCCACATCAAAACCCCCT
2Padang TACCA-TAAATACTTGACCACCTGTAGTACATAAAAACCCAATCCACATCAAAACCCCCT
Tengger-Jawa TACCA-TAAATACTTGACCACCTGTAGTACATAAAAACCCAATCCACATCAAAACCCCCT
Padang TACCA-TAAATACTTGACCACCTGTAGTACATAAAAACCCAATCCACATCAAAACCCCCT
CRS TACCA-TAAATACTTGACCACCTGTAGTACATAAAAACCCAATCCACATCAAAACCCCCT
Cina TACCA-TAAATACTTGACCACCTGTAGTACATAAAAACCCAATCCACATCAAAATCCCCT
6Jawa TACCA-TAAATACTTGACCACCTGTAGTACATAAAAACCCAATCCACATCAAAACCCCCT
Rahman TACTAGCAAACTCATCATTAGACATCGTACTACACGACACATACTACGTCGTAGCTCACT
*** * *** * * * * **** * ** ** * ** ** * * *

4Jawa CCC--CA-TGCTTACAAGCAAGTACAGCAATCAACCTTCAACTATCACACATCAACTGCA
7Jawa CCC--CA-TGCTTACAAGCAAGTACAGCAATCAACCTTCAACTATCACACATCAACTGCA
5Jawa CCC--CA-TGCTTACAAGCAAGTACAGCAATCAACCTTCAACTATCACACATCAACTGCA
Jawa CCC--CA-TGCTTACAAGCAAGTACAGCAATCAACCTTCAACTATCACACATCAGCTGCA
Sunda CCC--CA-TGCTTACAAGCAAGTACAGCAATCAACCYTCAACTATCACACATCAACTGCA
3Jawa CCC--CA-TGCTTACAAGCAAGTACAGCAATCAACCCTCAACTATCACACATCAACTGCA
2Jawa CCC--CA-TGCTTACAAGCAAGTACAGCAATCAACCCTCAACTATCACACATCAACTGCA
2Sunda CCC--CA-TGCTTACAAGCAAGTACAGCAATCAACCCTCAACTATCACACATCAACTGCA
Manado CCT--CA-TGCTTACAAGCAAGTACAGCAATCAACCCTCAACTATCATACATCAACTGCA
2Padang CCT--CA-TGCTTACAAGCAAGTACAGCAATCAACCCTCAACTATCATACATCAACTGCA
Tengger-Jawa CCT--CA-TGCTTACAAGCAAGTACAGCAATCAACCCTCAACTATCATACATCAACTGCA
Padang CCT--CA-TGCTTACAAGCAAGTACAGCAATCAACCCTCAACTATCACACATCAACTGCA
CRS CCC--CA-TGCTTACAAGCAAGTACAGCAATCAACCCTCAACTATCACACATCAACTGCA
Cina CCC--CA-TGCTTACAAGCAAGTACAGCAATCAACCTTCAACTATCACACATCAACTGCA
6Jawa CCC--CA-TGCTTACAAGCAAGTACAGCAATCAACCTTCAACTATCACACATCAACTGCA
Rahman TCCATTACGTCCTATCAATAGGTGCTGTATTCGCCATCACAGGAGGTTTCATTCACTGAT
* * * ** * * ** * * * ** * * * *** ***

4Jawa ACCCCAAAGCCACCCCTCACCCACTAGG--ATATCAACAAACCTACCCACTCT-TAACAG
7Jawa ACCCCAAAGCCACCCCTCACCCACTAGG--ATATCAACAAACCTACCCACTCT-TAACAG
5Jawa ACTCCAAAGCCACCCCTCACCCACTAGG--ATACCAACAAACCTACCCACTCT-TAACAG
Jawa ACTCCAAAGCCACCCCTCCCCCACTAGG--ATACCAACAAACCTACCCACCCT-TAACAG
Sunda ACTCCAAAGCMACCYCTCACCCACTAGG--ATACCAACAAACCTACCYAYCCT-TAACAG
3Jawa ACTCCAAAGCCACCCCTCACCCACTAGG--ATACCAACAAACCTACCCACCCT-TAACAG
2Jawa ACTCCAAAGCCACCCCTCACCCACTAGG--ATACCAACAAACCTACCCACCCT-TAACAG
2Sunda ACTCCAAAGCCACCCCTCACCCACTAGG--ATACCAACAAACCTACCCACCCT-CAACAG
Manado ACTCCAAAGCCACCCCTCACCCACTAGG--ATACCAACAAACCCACCCACCCT-TAACAG
2Padang ACTCCAAAGCCACCCCTCACCCACTAGG--ATACCAACAAACCCACCCACCCT-TAACAG
Tengger-Jawa ACTCCAAAGCCACCCCTCACCCACTAGG--ATACCAACAAACCCACCCGCCCT-TAACAG
Padang ACTCCAAAGCCACCCCTCACCCACTAGG--ATACCAACAAACCCACCCACCCT-TAACAG
CRS ACTCCAAAGCCACCCCTCACCCACTAGG--ATACCAACAAACCTACCCACCCT-TAACAG
Cina ACTCCAAAGCCACCCCTCACCCACTAGG--ATACCAACAAACCTACTCACCCT-TAACAG
6Jawa ACTCCAAAGCCACCCCCCACCCACTAGA--ATACCAACAAACCTACCCACCCT-TAACAG
Rahman TTCCCCTGTTCTCAGGCTATACCCTAGACCAAACCTACGCCAAAATCCATTTTGCTATCA
** * * **** * * * ** * * *

4Jawa TACATAGTA-CATAAAGCCA-TTTACCGTACATAGCACA-TTACAGTC------AAATCC
7Jawa TACATAGTA-CATAAAGCCA-TTTACCGTACATAGCACA-TTACAGTC------AAATCC
5Jawa TACATAGTA-CATAAAGCCA-TTTACCGTACATAGCACA-TTACAGTC------AAATCC
Jawa TACATAGCA-CATAAAGCCA-TTTACCGTACATAGCACA-TTGCAGTC------AAATCC
Sunda TACATAGTA-CATAAAGCCA-TTTACCGTACATAGCACA-TTACAGTC------AAATCC
3Jawa TACATAGTA-CATAAAGCCA-TTTACCGTACATAGCACA-TTACAGTC------AAATCC
2Jawa TACATAGTA-CATAAAGCCA-TTTACCGTACATAGCACA-TTACAGTC------AAATCC
2Sunda TACATAGTA-CATAAAGCCA-TTTACCGTACATAGCACA-TTACAGTC------AAATCC
Manado CACATGGTA-CATAAAGCCA-TTTACCGTACATAGCACA-TTACAGTC------AAATCC
2Padang CACATGGTA-CATAAAGCCA-TTTACCGTACATAGCACA-TTACAGTC------AAATCC
Tengger-Jawa CACATGGTA-CATAAAGCCA-TTTACCGTACATAGCACA-TTACAGTC------AAATCC
Padang CACATGGTA-CATAAAGCCA-TTTACCGTACATAGCACA-TTACAGTC------AAATCC
CRS TACATAGTA-CATAAAGCCA-TTTACCGTACATAGCACA-TTACAGTC------AAATCC
Cina TACATAGTA-CATAAAGCCA-TTTACCGTACATAGCACA-TTACAGTC------AAATCC
6Jawa TACATAGCA-CATAAAGCCA-TTTACCGTACATAGCACA-TTGCAGTC------AAATCC
Rahman TATTCATTGGCGTAAACCTAACCTTCTTCCCACAACACTTTCTTGGCCTATCAGGAATAC
* * **** * * * * ** * *** * * * *** *

4Jawa CTTCTCG-TCCCCATGGAT-GACCCCCCTCAGATA--GGGG-T-----------------
7Jawa CTTCTCG-TCCCCATGGAT-GACCCCCCTCAGATA--GGGG-------------------
5Jawa CTTCTCGC-CCCCATGGAT-GACCCCCCTCAGATA--GGGG-T-----------------
Jawa TTTCTCG-TCCCCATGGAT-GACCCCCCTCAGATA--GGGGTCCCTTGACCACCATCCTC
Sunda CTTCTCG-YCCCCATGGAT-GACCCCCCTCAGATA--GGGGTCCCTTGACCACCATCCTC
3Jawa CTTCTCG-TCCCCATGGAT-GACCCCCCTCAGATA--GGGGTCCCTTGACCACCATCCTC
2Jawa CTTCTCG-TCCCCATGGAT-GACCCCCCTCAGATA--GGGGTCCCTTGACCACCATCCTC
2Sunda CTTCTCG-TCCCCATGGAT-GACCCCCCTCAGATA--GGGGTCCCTTGACCACCATCCTC
Manado CTTCTCG-TCCCCATGGAT-GACCCCCCTCAGATA--GGAGTCCCTTGACCACCATCCTC
2Padang CTTCTCG-TCCCCATGGAT-GACCCCCCTCAGATA--GGAGTCCCTTGACCACCATCCTC
Tengger-Jawa CTTCTCG-TCCCCATGGAT-GACCCCCCTCAGATA--GGAGTCCCTTGACCACCATCCTC
Padang CTTCTCG-TCCCCATGGAT-GACCCCCCTCAGATA--GGAGTCCCTTGACCACCATCCTC
CRS CTTCTCG-TCCCCATGGAT-GACCCCCCTCAGATA--GGGGTCCCTTGACCACCATCCTC
Cina CTTCTCGC-CCCCATGGAT-GACCCCCCTCAGATT--AGAA-------------------
6Jawa CTCCTCG-TCCCCATGGATTGA-CCCCCTCAGATA--GGGGGT-----------------
Rahman CCCGACG--TTACTCGGAATAACCCGTTGCATACACCACATGAAATATCCTATCATCTGT
** * *** * ** ** *

4Jawa ------------------------------------------------------------
7Jawa ------------------------------------------------------------
5Jawa ------------------------------------------------------------
Jawa CGTGAAATCAATATCCCGCACAAGAGTGCTACTCTCCTCGCTCCGGGCCCATAACACT--
Sunda CGTGAAATCAATATCCCGCACAAGAGTGCTACTCTCCTCGCTCCGGGCCCATAACACT--
3Jawa CGTGAAATCAATATCCCGCACAAGAGTGCTACTCTCCTCGCTCCGGGCCCATAACACT--
2Jawa CGTGAAATCAATATCCCGCACAAGAGTGCTACTCTCCTCGCTCCGGGCCCATAACACT--
2Sunda CGTGAAATCAATATCCCGCACAAGAGTGCTACTCTCCTCGCTCCGGGCCCATAACACT--
Manado CGTGAAATCAATATCCCGCACAAGAGTGCTACTCTCCTCGCTCCGGGCCCATAACACT--
2Padang CGTGAAATCAATATCCCGCACAAGAGTGCTACTCTCCTCGCTCCGGGCCCATAACACT--
Tengger-Jawa CGTGAAATCAATATCCCGCACAAGAGTGCTACTCTCCTCGCTCCGGGCCCATAACACT--
Padang CGTGAAATCAATATCCCGCACAAGAGTGCTACTCTCCTCGCTCCGGGCCCATAACACT--
CRS CGTGAAATCAATATCCCGCACAAGAGTGCTACTCTCCTCGCTCCGGGCCCATAACACT--
Cina ------------------------------------------------------------
6Jawa ------------------------------------------------------------
Rahman AGGCTCATTCATTTCCCTAACGGCAGTAATATATTGAGGGGAATTAATCTAAAACACTCT
4Jawa ------------------------------------------------------------
7Jawa ------------------------------------------------------------
5Jawa ------------------------------------------------------------
Jawa -TGGGGGTAGCTAAAGTGAACTGTATCCGACATCTGGTTCCTACTTCAGGGTCATAAA-G
Sunda -TGGGGGTAGCTAAAGTGAACTGTATCCGACATCTGGTTCCTACTTCAGGGCCATAAA-G
3Jawa -TGGGGGTAGCTAAAGTGAACTGTATCCGACATCTGGTTCCTACTTCAGGGCCATAAA-G
2Jawa -TGGGGGTAGCTAAAGTGAACTGTATCCGACATCTGGTTCCTACTTCAGGGTCATAAA-G
2Sunda -TGGGGGTAGCTAAAGTGAACTGTATCCGACATCTGGTTCCTACTTCAGGGTCATAAA-G
Manado -TGGGGGTAGCTAAAGTGAACTGTATCCGACATCTGGTTCCTACTTCAGGGCCATAAA-G
2Padang -TGGGGGTAGCTAAAGTGAACTGTATCCGACATCTGGTTCCTACTTCAGGGCCATAAA-G
Tengger-Jawa -TGGGGGTAGCTAAAGTGAACTGTATCCGACATCTGGTTCCTACTTCAGGGTCATAAA-G
Padang -TGGGGGTAGCTAAAGTGAACTGTATCCGACATCTGGTTCCTACTTCAGGGCCATAAA-G
CRS -TGGGGGTAGCTAAAGTGAACTGTATCCGACATCTGGTTCCTACTTCAGGGTCATAAA-G
Cina ------------------------------------------------------------
6Jawa ------------------------------------------------------------
Rahman TTACGCCGGTTTCTATTGACTTGGGTTACTCGTGTGACCGCGGTGGCAGGCACGAAATTG

4Jawa ------------------------------------------------------------
7Jawa ------------------------------------------------------------
5Jawa ------------------------------------------------------------
Jawa CCTAAATAGCCCACACGTTCCCCTTAAATAAGACATCACGATGGATCACAGGTCTATCAC
Sunda CCTAAATAGCCCACACGTTCCCCTTAAATAAGACATCACGATGGATCACAGGTCTATCAC
3Jawa CCTAAATAGCCCACACGTTCCCCTTAAATAAGACATCACGATGGATCACAGGTCTATCAC
2Jawa CCTAAATAGCCCACACGTTCCCCTTAAATAAGACATCACGATGGATCACAGGTCTATCAC
2Sunda CCTAAATAGCCCACACGTTCCCCTTAAATAAGACATCACGATGGATCACAGGTCTATCAC
Manado CCTAAATAGCCCACACGTTCCCCTTAAATAAGACATCACGATGGATCACAGGTCTATCAC
2Padang CCTAAATAGCCCACACGTTCCCCTTAAATAAGACATCACGATGGATCACAGGTCTATCAC
Tengger-Jawa CCTAAATAGCCCACACGTTCCCCTTAAATAAGACATCACGATGGATCACAGGTCTATCAC
Padang CCTAAATAGCCCACACGTTCCCCTTAAATAAGACATCACGATGGATCACAGGTCTATCAC
CRS CCTAAATAGCCCACACGTTCCCCTTAAATAAGACATCACGATGGATCACAGGTCTATCAC
Cina ------------------------------------------------------------
6Jawa ------------------------------------------------------------
Rahman ACCAACCCTGGAGTTAGTATAGCTTAGTTAAACTTTCGTTTATTGCTAAAGGTTTATCAC

4Jawa ------------------------------------------------------------
7Jawa ------------------------------------------------------------
5Jawa ------------------------------------------------------------
Jawa CCTATTAACCACTCACGGGAGCTCT---CCATGCATTTGGTATTTTCGTCTGGGGGGTGT
Sunda CCTATTAACCACTCACGGGAGCTCT---CCATGCATTTGGTATTTTCGTCTGGGGGGTGT
3Jawa CCTATTAACCACTCACGGGAGCTCT---CCATGCATTTGGTATTTTCGTCTGGGGGGTAT
2Jawa CCTATTAACCACTCACGGGAGCTCT---CCATGCATTTGGTATTTTCGTCTGGGGGGTAT
2Sunda CCTATTAACCACTCACGGGAGCTCT---CCATGCATTTGGTATTTTCGTCTGGGGGGCAT
Manado CCTATTAACCACTCACGGGAGCTCT---CCATGCATTTGGTATTTTCGTCTGGGGGGTGT
2Padang CCTATTAACCACTCACGGGAGCTCT---CCATGCATTTGGTATTTTCGTCTGGGGGGTGT
Tengger-Jawa CCTATTAACCACTCACGGGAGCTCT---CCATGCATTTGGTATTTTCGTCTGGGGGGTGT
Padang CCTATTAACCACTCACGGGAGCTCT---CCATGCATTTGGTATTTTCGTCTGGGGGGTGT
CRS CCTATTAACCACTCACGGGAGCTCT---CCATGCATTTGGTATTTTCGTCTGGGGGGTAT
Cina ------------------------------------------------------------
6Jawa ------------------------------------------------------------
Rahman TGCTGTCTCCCATCGGGGTGTCGCTAGGCTAAGCGTTTTGAGCCGCATTGCTGCGTGCTT

4Jawa ------------------------------------------------------------
7Jawa ------------------------------------------------------------
5Jawa ------------------------------------------------------------
Jawa GCACGCGATAGCATCGCGAGACGCTGGAGCCGGAGCACCCTATGTCGCAGTATCTGTCTT
Sunda GCACGCGATAGCATTGCGAGACGCTGGAGCCGGAGCACCCTATGTCGCAGTATCTGTCTT
3Jawa GCACGCGATAGCATTGCGAGACGCTGGAGCCGGAGCACCCTATGTCGCAGTATCTGTCTT
2Jawa GCACGCGATAGCATTGCGAGACGCTGGAGCCGGAGCACCCTATGTCGCAGTATCTGTCTT
2Sunda GCACGCGATAGCATTGCGAGACGCTGGAGCCGGAGCACCCTATGTCGCAGTATCTGTCTT
Manado GCACGCGATAGCATTGCGAGACGCTGGAGCCGGAGCACCCTATGTCGCAGTATCTGTCTT
2Padang GCACGCGATAGCATTGCGAGACGCTGGAGCCGGAGCACCCTATGTCGCAGTATCTGTCTT
Tengger-Jawa GCACGCGATAGCATTGCGAGACGCTGGAGCCGGAGCACCCTATGTCGCAGTATCTGTCTT
Padang GCACGCGATAGCATTGCGAGACGCTGGAGCCGGAGCACCCTATGTCGCAGTATCTGTCTT
CRS GCACGCGATAGCATTGCGAGACGCTGGAGCCGGAGCACCCTATGTCGCAGTATCTGTCTT
Cina ------------------------------------------------------------
6Jawa ------------------------------------------------------------
Rahman GATACTTGTTCCTTTTGATCGTGGTGATTTAGAGGCTGACTCACCGGGACGGGGATGCTT

4Jawa ------------------------------------------------------------
7Jawa ------------------------------------------------------------
5Jawa ------------------------------------------------------------
Jawa TGATTCCTGCCCCATCCTATTATTTATCGCACCTACGTTCAATATTACAGGCGAACATAC
Sunda TGATTCCTGCCCCATTCTATTATTTATCGCACCTACGTTCAATATTACAGGCGAACATAC
3Jawa TGATTCCTGCCTCATCCCATTATTTATCGCACCTACGTTCAATATTACAGGCGAACATAC
2Jawa TGATTCCTGCCTCATCCTATTATTTATCGCACCTACGTTCAATATTACAGGCGAACATAC
2Sunda TGATTCCTGCCTCATCCTATTATTTATCGCACCTACGTTCAATATTACAGGCGAACATAC
Manado TGATTCCTACCTCATCCTATTATTTATCGCACCTACGTTCAATATTACGGGCGAACATAC
2Padang TGATTCCTACCTCATCCTATTATTTATCGCACCTACGTTCAATATTACGGGCGAACATAC
Tengger-Jawa TGATTCCTACCTCATCCTATTATTTATCGCACCTACGTTCAATATTACGGGCGAACATAC
Padang TGATTCCTACCTCATCCTATTATTTATCGCACCTACGTTCAATATTACGGGCGAACATAC
CRS TGATTCCTGCCTCATCCTATTATTTATCGCACCTACGTTCAATATTACAGGCGAACATAC
Cina ------------------------------------------------------------
6Jawa ------------------------------------------------------------
Rahman GCATGTGTAATCATAACCCTCAACACCCACTCCCTCTTAGCCAATATTGTACCTATCACC

4Jawa ------------------------------------------------------------
7Jawa ------------------------------------------------------------
5Jawa ------------------------------------------------------------
Jawa TTACTAAAGTGTGTTAATTAATTAATGCTTGTAGGACATAATAATAACAATTGAATGTCT
Sunda TTACTAAAGTGTGTTAATTAATTAATGCTTGTAGGACATAATAATAACAATTGAATGTCT
3Jawa TTACTAAAGTGTGTTAATTAATTAATGCTTGTAGGACATAATAATAACAATTGAATGTCT
2Jawa TTACTAAAGTGTGTTAATTAATTAATGCTTGTAGGACATAATAATAACAATTGAATGTCT
2Sunda CTACTAAAGTGTGTTAATTAATTAATGCTTGTAGGACATAATAATAACAATTGAATGTCT
Manado TTACTAAAGTGTGTTAATTAATTAATGCTTGTAGGACATAATAATAACAATTGAATGTCT
2Padang TTACTAAAGTGTGTTAATTAATTAATGCTTGTAGGACATAATAATAACAATTGAATGTCT
Tengger-Jawa TTACTAAAGTGTGTTAATTAATTAATGCTTGTAGGACATAATAATAACAATTGAATGTCT
Padang TTACTAAAGTGTGTTAATTAATTAATGCTTGTAGGACATAATAATAACAATTGAATGTCT
CRS TTACTAAAGTGTGTTAATTAATTAATGCTTGTAGGACATAATAATAACAATTGAATGTCT
Cina ------------------------------------------------------------
6Jawa ------------------------------------------------------------
Rahman ATACTAGTCTTTGCTGCCTGCCAAGCACGAGTAGG-CCTAGCCCTACTAGTCTCAATCTC

4Jawa ------------------------------------------------------------
7Jawa ------------------------------------------------------------
5Jawa ------------------------------------------------------------
Jawa GCACAGCCGCTTTCCACACAGACATCATAACAAAAAATTTCCACCAAACC----CCCCCC
Sunda GCACAGCCGCTTTCCACACAGACATCATAACAAAAAATTTCCACCAAACC----CCCCCC
3Jawa GCACAGCCGCTTTCCACACAGACATCATAACAAAAAATTTCCACCAAACC----CCCCCC
2Jawa GCACAGCCGCTTTCCACACAGACATCATAACAAAAAATTTCCACCAAACC----CCCCCC
2Sunda GCACAGCCGCTTTCCACACAGACATCATAACAAAAAATTTCCACCAAACC----CCCCCC
Manado GCACAGCCGCTTTCCACACAGACATCATAACAAAAAATTTCCACCAAACC----CCCCCC
2Padang GCACAGCCGCTTTCCACACAGACATCATAACAAAAAATTTCCACCAAACC----CCCCCC
Tengger-Jawa GCACAGCCGCTTTCCACACAGACATCATAACAAAAAATTTCCACCAAACC----CCCCCC
Padang GCACAGCCGCTTTCCACACAGACATCATAACAAAAAATTTCCACCAAACC----CCCCCC
CRS GCACAGCCACTTTCCACACAGACATCATAACAAAAAATTTCCACCAAACC----CCCCCT
Cina ------------------------------------------------------------
6Jawa ------------------------------------------------------------
Rahman TAACACATATGGCCTAGACTACGTACATAACCTAAGCCTACTCCAATGCTAAAACTAATC

4Jawa ------------------------------------------------------------
7Jawa ------------------------------------------------------------
5Jawa ------------------------------------------------------------
Jawa -TCCCCCCGCTTCTGGCCACAGCACTTAAACACATCTCTGCCAAACCCCAAAAACAAAGA
Sunda CTCCCCCCGCTTCTGGCCACAGCACTTAAACACATCTCTGCCAAACCCCAAAAACAAAGA
3Jawa CTCCCCCCGCTTCTGGCCACAGCACTTAAACACATCTCTGCCAAACCCCAAAAACAAAGA
2Jawa -TCCCCCCGCTTCTGGCCACAGCACTTAAACACATCTCTGCCAAACCCCAAAAACAAAGA
2Sunda -TCCCCCCGCTTCTGGCCACAGCACTTAAACACATCTCTGCCAAACCCCAAAAACAAAGA
Manado -TCCCCCCGCTTCTGGCCACAGCACTTAAACACATCTCTGCCAAACCCCAAAAACAAAGA
2Padang -TCCCCCCGCTTCTGGCCACAGCACTTAAACACATCTCTGCCAAACCCCAAAAACAAAGA
Tengger-Jawa -TCCCCCCGCTTCTGGCCACAGCACTTAAACACATCTCTGCCAAACCCCAAAAACAAAGA
Padang -TCCCCCCGCTTCTGGCCACAGCACTTAAACACATCTCTGCCAAACCCCAAAAACAAAGA
CRS ---CCCCCGCTTCTGGCCACAGCACTTAAACACATCTCTGCCAAACCCCAAAAACAAAGA
Cina ------------------------------------------------------------
6Jawa ------------------------------------------------------------
Rahman ATCCCAACAATCATATTACTACCACTAACATGAGTTTCCAAAAATCATATAATTTGAATC

4Jawa ------------------------------------------------------------
7Jawa ------------------------------------------------------------
5Jawa ------------------------------------------------------------
Jawa ACCCTAACACCAGCCTAACCAGATTTCAAATTTTATCTTTTGGCGGTATGCACTTT-TAA
Sunda ACCCTAACACCAGCCTAACCAGATTTCAAATTTTATCTTTTGGCGGTATGCACTTT-TAA
3Jawa ACCCTAACACCAGCCTAACCAGATTTCAAATTTTATCTTTTGGCGGTATGCACTTT-TAA
2Jawa ACCCTAACACCAGCCTAACCAGATTTCAAATTTTATCTTTTGGCGGTATGCACTTT-TAA
2Sunda ACCCTAACACCAGCCTAACCAGATTTCAAATTTTATCTTTTGGCGGTATGCACTTT-TAA
Manado ACCCTAACACCAGCCTAACCAGATTTCAAATTTTATCTTTTGGCGGTATGCACTTT-TAA
2Padang ACCCTAACACCAGCCTAACCAGATTTCAAATTTTATCTTTTGGCGGTATGCACTTT-TAA
Tengger-Jawa ACCCTAACACCAGCCTAACCAGATTTCAAATTTTATCTTTTGGCGGTATGCACTTT-TAA
Padang ACCCTAACACCAGCCTAACCAGATTTCAAATTTTATCTTTTGGCGGTATGCACTTT-TAA
CRS ACCCTAACACCAGCCTAACCAGATTTCAAATTTTATCTTTTGGCGGTATGCACTTT-TAA
Cina ------------------------------------------------------------
6Jawa ------------------------------------------------------------
Rahman AACACAACCACTCACAGCCTAATTATTAGCACACCCCTTACTATTTTTTAACCAAAACAA

4Jawa ------------------------------------------------------------
7Jawa ------------------------------------------------------------
5Jawa ------------------------------------------------------------
Jawa CAGTCACCCCCCAACTAACACATTATTTTCCCCTCCCACTCCCATACTACTAATCTCATC
Sunda CAGTCACCCCCCAACTAACACATTATTTTCCCCTCCCACTCCCATACTACTAATCTCATC
3Jawa CAGTCACCCCCCAACTAACACATTATTTTCCCCTCCCACTCCCATACTACTAATCTCATC
2Jawa CAGTCACCCCCCAACTAACACATTATTTTCCCCTCCCACTCCCATACTACTAATCTCATC
2Sunda CAGTCACCCCCCAACTAACACATTATTTTCCCCTCCCACTCCCATACTACTAATCTCATC
Manado CAGTCACCCCCCAACTAACACATTATTTTCCCCTCCCACTCCCATACTACTAATCTCATC
2Padang CAGTCACCCCCCAACTAACACATTATTTTCCCCTCCCACTCCCATACTACTAATCTCATC
Tengger-Jawa CAGTCACCCCCCAACTAACACATTATTTTCCCCTCCCACTCCCATACTACTAATCTCATC
Padang CAGTCACCCCCCAACTAACACATTATTTTCCCCTCCCACTCCCATACTACTAATCTCATC
CRS CAGTCACCCCCCAACTAACACATTATTTTCCCCTCCCACTCCCATACTACTAATCTCATC
Cina ------------------------------------------------------------
6Jawa ------------------------------------------------------------
Rahman CAACTTCCTCTTTAGCTGCTCCCTATCCTTTTACTCCGACCCCCTAACGAGCCCCCTCCT

4Jawa ------------------------------------------------------------
7Jawa ------------------------------------------------------------
5Jawa ------------------------------------------------------------
Jawa AACACAACCCCCGCCCATCCTACCCAGCACACACAC--CGCTGCTAACCCCATACCCCGA
Sunda AATACAACCCCCGCCCATCCTACCCAGCACACACACACCGCTGCTAACCCCATACCCCGA
3Jawa AATACAACCCCCGCCCATCCTACCCAGCACACACACACCGCTGCTAACCCCATACCCCGA
2Jawa AATACAACCCCCGCCCATCCTACCCAGCACACACACACCGCTGCTAACCCCATACCCCGA
2Sunda AATACAACCCCCGCCCATCCTACCCAGCACACACACACCGCTGCTAACCCCATACCCCGA
Manado AATACAACCCCCGCCCATCCTACCCAGCACACACAC--CGCTGCTAACCCCATACCCCGA
2Padang AATACAACCCCCGCCCATCCTACCCAGCACACACAC--CGCTGCTAACCCCATACCCCGA
Tengger-Jawa AATACAACCCCCGCCCATCCTACCCAGCACACACAC--CGCTGCTAACCCCATACCCCGA
Padang AATACAACCCCCGCCCATCCTACCCAGCACACACAC--CGCTGCTAACCCCATACCCCGA
CRS AATACAACCCCCGCCCATCCTACCCAGCACACACACACCGCTGCTAACCCCATACCCCGA
Cina ------------------------------------------------------------
6Jawa ------------------------------------------------------------
Rahman AATACTAACTACCTGACTTCTACCCCTCACAATCATGGCAA-GCCAGCGCCACCTATCCA

4Jawa ------------------------------------------------------------
7Jawa ------------------------------------------------------------
5Jawa ------------------------------------------------------------
Jawa ACCAACCAAACCCCAAAGACACCCCCCACA------------------------------
Sunda ACCAACCAAACCCCAAAGACACCCCCCACA------------------------------
3Jawa ACCAACCAAACCCCAAAGACACCCCCCACA------------------------------
2Jawa ACCAACCAAACCCCAAAGACACCCCCCACA------------------------------
2Sunda ACCAACCAAACCCCAAAGACACCCCCCACA------------------------------
Manado ACCAACCAAACCCCAAAGACACCCCCCAC-------------------------------
2Padang ACCAACCAAACCCCAAAGACACCCCCCAC-------------------------------
Tengger-Jawa ACCAACCAAACCCCAAAGACACCCCCCAC-------------------------------
Padang ACCAACCAAACCCCAAAGACACCCCCCAC-------------------------------
CRS ACCAACCAAACCCCAAAGACACCCCCCAC-------------------------------
Cina ------------------------------------------------------------
6Jawa ------------------------------------------------------------
Rahman ACGAACCACTATCACGAAAAAAACTCTACCTCTCTATGCTAATCTCCCTCCAAATCTCCT

4Jawa ------------------------------------------------------------
7Jawa ------------------------------------------------------------
5Jawa ------------------------------------------------------------
Jawa ------------------------------------------------------------
Sunda ------------------------------------------------------------
3Jawa ------------------------------------------------------------
2Jawa ------------------------------------------------------------
2Sunda ------------------------------------------------------------
Manado ------------------------------------------------------------
2Padang ------------------------------------------------------------
Tengger-Jawa ------------------------------------------------------------
Padang ------------------------------------------------------------
CRS ------------------------------------------------------------
Cina ------------------------------------------------------------
6Jawa ------------------------------------------------------------
Rahman TAATTATAACATTCACAGCCACGGAGCTAATCATATTTTATATCTTCTTCGAAACCACAC

4Jawa ------------------------
7Jawa ------------------------
5Jawa ------------------------
Jawa ------------------------
Sunda ------------------------
3Jawa ------------------------
2Jawa ------------------------
2Sunda ------------------------
Manado ------------------------
2Padang ------------------------
Tengger-Jawa ------------------------
Padang ------------------------
CRS ------------------------
Cina ------------------------
6Jawa ------------------------
Rahman TTATCCCCACCCTAGCTATCATCA