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Beagle-A Darwinian Approach To Pattern Recognition
Beagle-A Darwinian Approach To Pattern Recognition
1 9 8 1 .\ ' o l 1 ( l n n I SQ*16K P r i n r e di n G r e a t B r i t a i n
RICHARD FORSYTH
Departnrent
of Mathemutics.Poly,tecluic
o-fir,iorth
London,
Hollowat,Roatl,Lontlonr\'7SDB(U.rK.)
( R e c e i r e dD e c e n t b e r1 7 . 1 9 8 0 )
1 IN TRO DUCT I O N i sti c fl avour that w e mi ght cal l " know l edeefarm-
i ng" or perhaps" sophi cul ture" .Ir-rparti cul ar i t i s
Th i s r : por t des c r i b e s BE AGL E (Bi o l o g i c a l the author' scontenti onthat the great pri nci pl e of
Er,o l u ti o nar y , 4igor it h m G e n e ra ti n gto g i c a l Ex - natural sel ecti oni s a val uabl etool i n the stock-i n-
p re ssi o nsrli' hic his a c om p u te r s y s te mfo r p ro d u c - trade of thc consci enti ousknow l edgeengi neer(or
in-ed e cis iln- r ulesby in d u c ti o n l ro m a d a ta b a s e . farnrer).
I t u 'o rks r t n t he pr inc ip l e o f n a tu ra l -o r a t l e a s t The idea of systemstirat improve b), a compu-
n a tu ra l i s t r c - - s elec t ion Th . u s i t re p re s e n tsa w e a v - tati onal anal ogy rvi th survi val of the fi ttest has
ing -to g e t hc rof s t r and s i n th e th o u g h t o f th re e been pursued before,2-a but has lapsed from
g re a t 1 9t h- c ent ur yE ng l i s h me n ,Bo o l e , Ba b b a g e favour someu' hat si nce the pi oneeri ng spi ri t of
a n d Da rr i in. Cyberneticsrvas consolidatedinto the mature (?)
Wh i l e " k nowledgeen g i n e e ri n g "o r " k n o w l e d g e di sci pl i ne of A rti fi ci al Intel l i gence. S el fri dge' s
refining" is currentiy enjoying something of a " P andemol l i um" w as an earl y exampl es of a
vogue and has already begun to produce impres- system desi gned to contai n " the seeds of sel f-
s i v e r e s u l t s . lt h i s r e p o r t c o n t a i n sa p l e a n o t t o i mprovement" rvhi ch i nvoi ved. among other
parallel endeavour with a less mechan- thi ngs. repi aci ng " demons" u' hi ch di scri rni nated
:::'::,,' 159
160 R I C H A R DF O R S Y T H
poor ly am o n g th e i n p u t p a tte rn s th e y w ere sup- The datafi l econtai nsa " trai ni ng set" of s am ples T
pos ed t o d i s ti n g u i s hw i th n e w " d e m o ns" formed for which the categories are knorvn. It should L(
of int ege rsth a t e x i s te di n a u n i v e rs ec o l l si sti ngof measuresfor the case on each feature or variable l (
T he num b e r p a tte rn so f th e o rg a n i s n t srverei nter- bel ongs.(The categorynumber must end a line. )
((
pr et ed a s mo v e s i n th e g a m e . T h e survi vi ng There follorvs the first three lines oi a tvpical
or ganis m sw e re a l l o w e d to re p ro d u c e(asexual l y. datafi l e. u
e
4 18
tl
5 1 7 6 8 1 6 5 r 2 1 1 48 8 9 5 1 3 r 1 t 4 1 6 6 1 r 5 2 2 5 I I 0 5 6 22 0 6 1 1 33 4 0 g
D
i t a p p e a r s )a n d s o m e r a n d o m m u t a t i o n s i n t r o - T h i s i s t h e b e g i n n i n go f a f i i e o f d a t a f r o m 1 1 3
duced,after rvhich the process\\rasrepeated.After pati ents admi tted to hospi tai w i th hear t com -
s om e t ho u s a n d so f g e n e ra ti o n sh e h ad a col i ec- p l a i n t s . TE a c h p a t i e n t w a s m e a s u r e do n 1 8 v a r i -
t ion of org a n i s m sti ta t w e re e x p e rta t Tac-ti x. B ar- abl eson admi ssi on.P recedi ngthe 18 scor esis an
r ic elli f ou n d rt q u i te a n e ffe c ti v ete c h ni que.and i t i dentrfi cati onnumber (4 characters)rvhrc h is 5'17
is m y v r e w th a t i t i s d u e fo r a re v tv a l . for thi s pati ent. Fol l orvi ng the scoresi s the cat e-
-qory number (1 : l i ved, 2 : di ed). These cases
2 BEAGLE-THE U S E R ' SV I E W rvere used for testi ng: see secti on4. (The f ir st 3
varrabl esare age. hei ght and sex; so thi s pat ient
T he s y s te ma s p re s e n tl f i m p l e me ntedconsi sts r v a s 6 8 y e a r s o l d . 1 6 5c m t a l l . a n d m a l e . . . . h e
o f t r v o P A S C A L p r o g r a m sr u n r r i n go n t h e D E C survived.)
S y s t e m - 1 0a t P o l l ' ' t e c h n i co f N o r t h L o n d o n , To enabl e the program to assesseach r ule's
nanr ely H E R B (Il e u ri s ti c E v o l u ti onarl ' R ui e performancethe user must al so furni sh a payof f
B r eeder ) a n d L E AF (L o g i c a l E v a l uator A nd nratrix in a separatefile u'hich effectivelystates
F or ec aste r).T h e y c a n b e a c c e s s e dl i k e any' other the val ue or cost of each cl assi fi cati on or misclas- (
s t at is t ica lp a c k a g e a n d i n fu n c ti o n correspond srfi cati on.The payoff fi i e al so i ndi cateshow m any tr
m os t c lo s e l y to d i s c ri m i n a n t a n a i y s i s.Together categori esare i n use.S i ncethe program rvor ks on tr
t hey per f o rm th e ta s k o f c l a s s i i y i n gs ampl esi nto tri -statel ogi c tt' l tere1 - )' es,0 : don' t-kn ow ar ld
one of t w o o r m o re c a te g o ri e so ri th e basi sof the - 1 - n o . t h i s m e a n sa 3 b y N C t a b l e * ' h e r e N C
v lilues of a n u mb e r o f m e a s u re so r parameters i s the number of cl asses. (Later rel eases' uv iliallou'
des c r ibi n g e a c h s a mp l e . H ER B c re a tes andi or the user to speci fyone of sevcralmul ti -sta t e! ogics
m odif iesth e c l a s s i fi c a ti o nru l e s w h i c h LE A F then o f w h i c h 0 . . 1 . B o o l e a n .w ' i l lb e a s p e c i a cl a s e . ) b
us es .t y p i c a l l y to fo re c a s tg ro u p m e m bershi pfor For the testson the hospi taladmi ssi ond at a t he I
s am ples ' n l ' h o scel a s si s n o t k n o w n . pavoff matrix \\'as as follorvs. t
2. 1 f / ie H E R B Pro g ra n t (
ActualClass
HE RB re q u i re sth re e i n p u t fi l e s -a datafi i e.a C omputer D eci si on 1 (lived) 2 (died)
pav of f f il e a n d a n o l d ru l e fi l e (p o s s i bl yempty).It - I (no) -1 +1
pr oduc e s a s o u tp u t a n e u ' ru l e fi l e u,hi ch i s as 0 (maybe) 0 0
qood as o r b e tte r th a n th e o l d o n e . I (1'es
) -fl
, i
-i
BEAGLE . tb l
Th u s a r ule gained a p o i n t fo r a c o rre c t c l a s s i fi - same format as the training set-the only differ-
ca ti o n air d los t one f o r a n i n c o rre c t o n e . Mo re ence bei ng that the actual cl assesneed not be
compler rervard/punishmentschedulesrvith more know n zero i ndi cati ng unknow n cl ass member-
classesa.reof course possible. ship-and runs a rule file on it. The user specifies
Fi n a l jr . t he us er s up p l i e sa n i n i ti a l ru l e fi l e c o n - horv many rul es to use: these are al w ays l eft
ta i n i n g up t o 64 r ules .I n i ti a l l y th e rem a y b e n o n e , ordered by H E R B w i th the best fi rst. LE A F can
in rvhicir case the program will generatesome at be requestedto produce: (1) a l i sti ng of al l cases
random w i th predi ctedcl ass.and actual cl assand scorei f
A r u i . ' i s r e p r e s e n t e db y a f u l l y b r a c k e t e d knorvn; (2) a summary of the performanceof each
Bo o l e a n c r pr es s ionen d e d b y a d o l l a r s i g n , s u c h r u l e a n d a l l t h e r u l e sj o i n t l y ' : ( 3 ) a n o r d e r i n g o f
AS casesby rul e consensusfrom most l i kel y Y es to
most l i kel y N o.
( ( * q G E t 0 ) o L ( ( # 4 L T 1 0 )A N ( * f l NE 0)))$
N oti ce that the rul es produced bv H E R B can
wh i ch Si. r ie S t hat v ar ia b l e4 (* q l s h o u l d e x c e e do r be appl i ed by a person. LE A F i s merel y a con-
eq u a l l i t or t hat bot h v a ri a b l e 4 s h o u l d b e l e s s veni ence.C ontrast thi s i vi th the l i ncar functi ons
t h a n 1 { r r n d v a r i a b l e1 7 n o t z e r o f o r t h e r u l e t o w i th coeffrci entsexpressedto 8 or 10 deci mal
g i v e a p r > r t i v e( t r u e )r e s u l t . pl acesoutput by conventi onaldi scri mi nantanal y-
Th e ,' : ' er at or s ar e as fo l l o w s . si s packages:no one i n thei r ri ght mi nd i voul d try
t o u s e t h o s ew i t h o u t m a c h i n ea s s t s t a n c e .
EQ ar it h me ti ce q u a l i ty
NE ar it h me ti ci n e q u a l i ty
GT greater than
3. HOW I{ ERB WORKS
LT les st h a n
GE gr ea te rth a n o r e q u a l to
H E R B a t t e m p t st o m i m i c e v o l u t i o nb 1 ' n a t u r a l
LE les st h a n o r e q u a l to
sel ecti on.Its " organi sms"are the rul es and thei r
OL logic a l d i s j u n c ti o n(i n c l u s i v eo r)
survi valdependson how w el l thei , categori zethe
AN logic a l c o n j u n c ti o n(a n d )
s a m p l e si n t l r e t r a i n i n g s e t .
NO negation
It runs for a number of generati ons.chosenby
PLt.S addition
t h e u s e r .A g e n c r a t i o nc o n s r s t o
sf one run through
L E- S S s ubtra c ti o n
t h e d a t a d u r i n g u , h i c h e a c h r u l e i s e v a l u a t e do n
BY m ulti p l i c a ti o n
everv case and scored accordi ng to the payoff
OVI.R division
matri .x.The rul es are then ranked by total score
(Th e o d. : nam ess uc h a s A N a n d O L rv e rec h o s e n * ' rth the best rul es at the top. i .e. thosc w ' i th the
to a vo rrl . r c las h r v it h P ,4 S C A L p re d e fi n e do p e ra - hi ghestscore.
to rs.) l -he scori ngformui a i s actual l l '
( ( G O O D N E S S - MI N S C O R E )x ( A X S C O RE - N {I N S C O RE ) - S I Z E
G F A C T O R ) , 'M
;j,
:"j1+!t1,i tlil
j#:*tii
IOZ RICHARD FORSYTH
alm os t,a n y p ri c e ; a l o w s e tti n gi s a bi as torvards so on, l eavi ngthe pruned tree rvi th the sam evalue
br ev it y. but expressedmore succi nctl y. The r esult of
Hav in g b e e n ra n k e d th u s , th e b re edi ngbegi ns. TIDYing
T he t op q u a rte r (2 5 % ) a re l e ft a l o ne. They are
good e n o u g h to s u rv i v e u n to u c h e d.The second
( ( ( sB Y 4 )G r 1 6 A
) N (*n EQ #8))
quar t er a re a l l s u b j e c te dto a p ro c e dureGR OW would be
whic h a d d s a n o d e c o m p o s e d a t r andom. For
(*n EQ #8)
ex am p l e ,GR O W o n
( ( * 1 O L ( # 2 E Q o ) )G r 6 2 ) sirrce(5 BY 4) : 20 and (20GT 16): + I (true).
Then the next generation begins.The process
m ight p ro d u c e continues for the requirednumberof generations,
( ( * t P L U S5 )O L ( * z e q 0 ) )G r 6 2 ) ) and then the new rulcsare printedonto the out-
put file.
Rules in th e th i rd q u a rte r a re s u b j e ctedto a pro-
c edur e n a m e d S L IM w h i c h i s th e obverse of
G RO W : th e y l o s e a ra n d o ml y s e l e ctedterm or S O M E T E S T SO F H T R B
s ubex p re s s i o nT.h e y h a v e s u rv i v e db u t are suffer-
ing f r om " ma l n u tri ti o n " . F i n a l l y th e bottom 25)( The questionis: doesit rvork'?
ar e s ub j e c te dto a p ro c e d u rec a l l e d KILL rvhi ch. To establ i sha comparati ve standard t he dis-
s queam i s h re a d e rs ma y b e a s s u re d. causes no cri mi nant anai ysi sfuncti on of the S P S S package
pain. on the D E C S ystem-10hbrary w as run r vit h t he
T o r e p l a c eth e d e a d ru l e s n e w o n es are formed hospi tal admi ssi ondata. It produced two iincar
by m at i n g to g e th e re i e me n tsfro m the top hal f of functi onsof sevenvari abl espl us a constant .Bot h
t he lis t . In te rn a l l y th e ru l e s a re h e l d as bi narl ' tl-resefunctions are to be evaluatedfor each case
t r ees .T h e MA T E, p ro c e d u reta k e sa random sub- and i f l uncti on 1 gi ves a hi gher val ue the sam ple
tree from one parent rule selectedat random from i s assi gnedto group 1 (l i vi ng) w hereasi f f unct ion
t he upp e r h a l f a n d c o mb i n e s i t rvi th another 2 g i v e sa h i g h e r v a l u e t h e s a m p l ei s a s s i g n e dt o
c hos enl i k e rv i s eT, h e tw o p a rts a re th en l i nked by group 2 (dead).(There \\/ere70 survi vors and 43
a r ando ml y s e l e c te dc o n n e c ti v eto gi ve a ful l y deaths, but thi s i nformati on w as not used t o
f or m ed e x p re s s i o nF. o r e x a m p l e .th e mati ng of w e i g h tt h e p r i o r p r o b a b i l i t i e s . )
( ( * + G r 6 2 )A N ( # 3 E Q 0 ) ) The di agnosti c vari abl eschosen w ere, in de-
scendi ngorder of i mportance.numbers 6 ( m ean
with arteri al pressure).9 (mean venous pre ssur e) .4
( ( * t ' t B Y - 2 ) P L U S( ( + t s G T s ) o L ( # 2 L F .
' il:
BEAGLE I O_1
s.=!.-iir-i
Pe rh a p . s t at is t ic ians rv , h o a re o n th e n ' h o l e A s a t e s t 1 2 g o l d m e d a l l i s t sf r o m t h e 1 9 8 0
qu i te cr)i . 1. , ' nt t o c om pute ri z ete c h n i q u e sw o rk e d N{osco*' Olympics \\'ere rated by this rule. This
out by lr'.j,rson and Fisher over 50 years ago and w ' asl resh data. not used i n the trai ni ng phase.A l l
r vh o te n tj it ) r eg?r d ev en Ba y e s i a nd e c i s i o n -m a k - \\' erecorrectl y categori zedexcept P i etro Mennea
lng as ii:r erciting but not every'respectable who. at 150 pounds.is a bit iight for a w'hite
n o v e l t y ' . . : , o u l dw a k e u p t o t h e p o t e n t i a l o f spnnter.
t od a y'sc'. , ' r erst y s t em s . N ,B . These fi _sures appl y to Ol ympi c athl etes:
j ust becauseyou $' ei _eh over 155 pounds do not
A se cr.: . .t]es t was r un o n d a ta c o n c e rn e drv i th
t he p h 1 'sr. . . rof e m ale at h l e te s .H e re th e d a ta w a s get the i dea that vou are a march for A l l an W el l s!
t h e a g e r = 1 ) , h e i g h t i n i n c h e s( * Z S ^ w e i g h t i n
pou n d s ( -= . 1)and r ac e ( * + 1 o f th e m e d a l l i s tsi n
the runnrns and walking events of the 1968 5 REMARKS
Me xi co C) lv m pic G am e s . R a c e w a s e i th e r 0
( rvh i te )o r 1 ( biac k ) .( O ne J a p a n e s ew a s a rb i tra ri l y I see three j usti fi cati onsfor thi s ki nd of exer-
assi g n e di ., r ac e 0 and M o h a m m e d Ga mmo u d i . ci se. Fi rstl y. i t i s i nteresti ng i n i ts ow n ri ght.
rvho appr-i,i-ed tw'iceby virtue of rvinning medals secondly',the rules behave in an interesting fash-
in two d i ;:' : r entev ent s ,w a s c l a s s e da s 0 th e fi rs t i on: and thi rdl l ' . i t seemsto rvork.
time and i the next:he is Tunisian.) In the fi rst pl ace i t i s fun to try a l i ttl e abstract
Th e a i nt \ \ ' as t o ar r ive a t a ru l e th a t rv o u l d gardeni ng,grorvi ng an orchard of bi nary trees.
disti n g u i s ; rt he s pr int ers fro m th e l o n g -d i s ta n c e And it might be fruitful in another sense.After all.
me n o n ti r e bas is of t he d a ta a b o u t a g e , h e i g h t, \\/e are only here by courtesy of the principle of
rveightaitc.lrace.The eventswere actually put into natural sel ecti on,A I rvorkersi ncl uded,and si nce
5 cl a sse si .r om s hor t es tt o l o n s e s t. i t i s so porverfuii n produci nq naturai i ntel l i gence
164 R]CHARD FORSYTTI
it behov e su s to c o n s i d e ri t a s a m e th od for cul ti - over a liirge mass of figures and extract an eli-
vating the artificial variety, ci ent cl assi fi cati onrul e for the casesthere wouid
T he s e c o n dj u s trfi c a ti o ni s th e s u rp ri si ngl yl i fe- be l i ttl e need for thrs ki nd of program.)
lik e beha v i o u r o f th e ru l e s th e m s e l v es.It can be The ti ri rd poi nt i s that the systemw orks quit e
appr ec ia te db y l o o k i n g a t th e to p 4 rul es pro- w el l , even though thi s i s versi on 1.0 of the pr o-
duc ed by Il ER B o n th e h o s p i ta l a d mi ssi onsdata gram. The rul es produced are short and t o t he
a f t e r 1 , 1 1 , 1 1 1a n d l l i l g e n e r a t i o n s . point. though it is fair to mention that the com-
( # 6 G F .( 6 2L E S S# 1 1) s02 69
( ( 6 1L E S S# 1 4 )L E # 6 ) 119 69
( ( 6 1L E S S# 1 1 ) L T # 6 ) 418 69
BE,{GLE 165
BE.. lt ) l, E is s t ill a t a p ro to ty p e s ta g e .a n d c a n
b e co n. . ic r ably im pro v e d .On e p i a n n e d e n h a n c e - 7 CONCLUSIONS
me n t \\ . : : r ' r ) eDt ion ei d n s e c ti o n2 .i -a l i o w i n g th e
mu l ti - s t . , r elogic r ang eto b e s p e c i fi e db y th e u s e r. I rl ' oul d l i ke to presentN atri ral i sti cS el ecti onas
A s c i, . ld ex t ens io nth a t q ' o u l d n o t b e d i f' h c u l t a v i a b l eA I t e c h n i q u cT. h i s i s r r o r t o s a v i r i s a
to rm p. r m ent would b e to a l l o w , l i o a ti n g -p o i n t pai racea.I suspectthat there i s ci rl cri .sa better
a ri th nt - ' :, - as r v ellas i n te g e rs ,th o u g h th e i n te ra c - w a y ( c h e a p e r a n d , L o rq u i c k e r ) . I u r n o s i n g i e
ti o n ri r : : . lt t gic alv alu e srv o u l d h a v e to b e c a re fu l l v nrcthod rs more appropri ate for " sati sfi ci ni r"i n
c o n s i d i : - ' Jf i r s t .I t m i g h t b e a n o p p o r t u n i t ) 8t o s u c h a r v i d ev a r i e t yo f p r o b l e n t s . e
i n t r o d L-.: ' f u z z l tl o g i c ' a t t h e s a m e t i m e . ( H E R B O n t l t e c r e d i t s i d e N a t u r a l i s t i c S e i e c t i o ni s
a n d L I : . ll- alr eadyus ea " s i i _ s h tl t, fu z z y " c o m p a ri - a b s o l u t e l vg c n e r a l .A u s e r c a n i r u r l a n y d a t a a t
s o n s c , : J : l r ' s u c ht h a t 6 ; 1G E 6 5 i s n o t q u i t e s o H E R B hor.r' cver noni i near.ho* ' ever " r.toi sv"horv- .
fa l sea. , - r )G E 65, b u t th e u s e fu l n e s so f th i s h a s e v e r m u c h t t v i o l a t e st h e a s s u m p t i o n sa b o u t d i s -
n o t b c c : .. r s s e s s e d . ) t r i b u t i o n a n d s c a l i n gu n d e r i v i n gm ( ) s t s t a t i s t i c a l
A n o : ; . , ' ; p- l a n n e di m p r o v e n t e n it s t h e i n c l u s i o n tests.and gct a reasonabl eset of di scri rni nati on
o l a d c i: , nal oper ato rs .T h e MOD (re ma i n d e r ) rul es i n reasonabl eti me. A nd si i tccthose.rul es are
f u n c t i t , : .r i i l l b e o n e , b u t n t o r e i m p o r t a n t r v i i l b e pLrbl i cand conrprchensi bl c. not arcancteci tnocra-
th e p ar : \ O . . O S t o a l l o rv c o n s tru c ti o n so f th e t i c b i a c k m a g i c . m a n - m a c h i n ec o o p e r a t i o ni s f a -
form ci htated.The hunral tcan do some of the hypothe-
(B SO (At OS A2)) s i z i n g( w ' h i c hp e o p l ea r e g o o d a t ) l e a v i n gr h e t e s t -
i ng (u' hi chpeopl eare bad at) to the compr-rter.
rvhich ..r':rc-Sfof F o r e x a m p l c .t o c l a s s i i yt h e t e s t d a t a u s e d i n
thi s paper a sequenti aideci si onproceduresLrchas
i f B t i r e n A 1 e l s e4 2
that proposcd b1,'H unt10 rni ght have beerl more
a n d u j l , : r r e a r u d i m e n t a r l ' p r o g r a m m i n ga b i l i t 1 , . e c o n o n t i c a lb: u t t h e t r o u b l e w ' i t h s t e p * ' i s ea l g o r -
O f c o t u - - 't h i s h i g h l i g h t st h e f a c t t h a t t h e r u l e sa r e i thms rvhi ch 1,' i el da di scri mi nati on nct or pro-
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t e m s i r , ' , r l du l t i m a t e i y g e n e r a t e L I S P f u n c t i o n s . ri ' herethere can be no error i n tl i e trai ni ng data
B u t t h i . : s r a t h e ra d i s t a n tg o a l . I t w ' o u l dr e m o v e and rvherethe t,ari abl esi rave rathcr feu' di screte
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l i zi n g t : : - . r ules as f ar a s p ro d u c ti o n s r,s te mso f a L a s t l l t h e r e i s t h e m a t t e r o f r n t a g e .I s t h e
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ti o n . m ov e on t o a h i e ra rc h i cs tru c tu re .c o rre - not merel i ' pi cki ng neu, frui t from ti rc l orbi dden
s p o n d r i r gt o m u l t i - c e l l u l a ra n i m a l s H E R B u ' o u l d (B i nary' )Tree of K norvl edge.but actual i l ' rnaki ng
n e e d l n d - l e v e lo r _ s a n j s m(ss t r a t e q i e sn). i t h ' . g r e e n it _qrow.)
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