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Combined X-Ray, IR, Intramolecular Proton Transfer and Quantum Chemical Studies On (E) - 2-Bromo-4-Methoxy-6 - ( (P-Tolylimino) Methyl) Phenol
Combined X-Ray, IR, Intramolecular Proton Transfer and Quantum Chemical Studies On (E) - 2-Bromo-4-Methoxy-6 - ( (P-Tolylimino) Methyl) Phenol
7(1):92-101, 2017
Abstract
In this work, molecular structure of (E)-2-Bromo-4-methoxy-6-[(p-tolylimino) methyl] phenol which is an o-hydroxy Schiff base
derivative was characterized by X-ray single crystal diffraction, IR spectroscopy. In the quantum mechanical calculations, the density
functional theory (B3LYP) with 6-31G (d, p) was used to support our studies. According to the X-ray crystallographic data, it was
observed that adopts the phenol-imine tautomeric form of the compound in solid state.
The two possible tautomeric forms of the title compound were investigated using DFT method with B3LYP applying 6-31G(d,
p) basis set. A relaxed potantial energy surface (PES) scan was performed based on the optimized geometry of the OH tautomeric
form and O–H bond distances were used as the redundant internal coordinate. PES scan process helped us for understand the effects
of transfer on the molecular geometry. At the same time, in this study, nonlinear optical properties (NLO) of the molecule were
investigated.
Keywords: Density functional theory (DFT), Nonlinear optical properties (NLO), Schiff base, Tautomerism
Öz
Bu çalışmada, o-hidroksi Schiff Bazı türevi olan (E)-2-Bromo-4-metoksi-6-[(p-tolilimino)metil]fenol molekülünün moleküler ve
kristal yapısı tek kristal X-ışını kırınımı ve IR spektroskopileri ile karakterize edildi. Kuantum mekaniksel hesaplamalarda Yoğunluk
Fonksiyoneli Teorisi B3LYP/6-31G(d,p) baz seti kullanılarak çalışmalarımız desteklendi. X-ışını kristalografisi verilerine göre bileşiğin
katı halde fenol-imin tautomerik formu benimsediği gözlenmiştir.
Molekülün iki tautomerik formu da DFT/B3LYP/6-31G(d,p) yöntemi kullanılarak incelenmiştir. Potansiyel enerji yüzeyi (PES)
taraması OH tautomerik formun optimize geometrisi üzerinden gerçekleştirilmiştir ve içsel koordinat olarak O–H bağ uzunluğu
kullanılmıştır. PES süreci, bizlere moleküler geometri üzerinde proton transferi etkilerini anlamak için yardımcı olur. Aynı zamanda
bu çalışmada, molekülün doğrusal olmayan optik (NLO) özellikleri de incelenmiştir.
Anahtar Kelimeler: Yoğunluk fonksiyoneli teorisi (DFT), Doğrusal olmayan optik özellikler (NLO), Schiff bazı, Tautomerizasyon
Schiff bases exist in two possible tautomeric forms known 2.3. Crystal Structure Determination
as phenol-imine (OH) and keto-amine (NH) (Fig. 1).
The single-crystal X-ray data were collected on a STOE
Depending on the tautomers, two types of intramolecular
IPDS II image plate diffractometer at room temperature
hydrogen bonds are observed in Schiff bases: O−H···N
(296 K). Graphite-monochromated Mo Kα radiation (λ
in phenol-imine (Petek et al. 2007, Yüce et al. 2004) and
= 0.71073 A) and the w-scan technique were used. The
N−H···O in keto-amine (Şahin et al. 2005) tautomers.
structure was solved by direct methods using SHELXS-97
The presence of ortho hydroxyl group, photo- and (Sheldrick 2008) and refined through the full-matrix least-
thermochromism may involve reversible proton transfer squares method using SHELXL-97 (Sheldrick 2008),
from the hydroxy O atom to the imine N atom and this implemented in the WinGX (Farrugia 1999) program
process associated with a change in π-electron configuration suite. Non-hydrogen atoms were refined with anisotropic
under the influence of light or temperature (Cohen et al. displacement parameters. Atom H1 was located in a
1964, Moustakali-Mavridis et al. 1978, Hadjoudis et al. difference Fourier map and refined isotropically, and the
1987). The proton transfer process shows that position of other H atoms were positioned geometrically and treated
the tautomeric equilibrium also depends on the electronic using a riding model. Data collection: Stoe X-AREA (Stoe
structure of the molecule with its conformation. 2002), cell refinement: Stoe X-AREA, data reduction:
Stoe X-RED32 (Stoe 2002). The general-purpose
To the best of our knowledge, neither the synthesis nor
crystallographic tool ORTEP-3 (Farrugia 1997) was used
the theoretical studies on the compound of (E)-2-Bromo-
for the structure analysis and presentation of the results.
4-methoxy-6-[(p-tolylimino)methyl] phenol have been
Details of the data collection conditions and the parameters
available until now. We believe that our paper will be useful
of the refinement process are given in Table 1.
for the design and synthesis of new materials.
2.4. Computational Procedure
2. Material and Methods
All quantum chemical calculations were performed with
2.1. Synthesis the Gaussian 09W software package (Gaussian09 2009)
For the preparation of (E)-2-bromo-4-methoxy-6-[(p- and GaussView visualization program (Dennington et
tolylimino)methyl]phenol compound the mixture of al. 2009) on a personel computer. Starting coordinates of
3-bromo-2-hydroxy-5-methoxybenzaldehyde (0.5 g, 2.16 the title molecule were taken from the X-ray geometry. In
mmol) in ethanol (20 ml) and 4-methylaniline (0.23 g, 2.16 order to perform geometrical optimization and theoretical
mmol) in ethanol (20 ml) was stirred for 1 h under reflux. calculations of the title molecule, DFT method with
The crystals suitable for X-ray analysis were obtained from Becke’s three parameters hybrid exchange-correlation
ethanol by slow evaporation (yield 72% ; m.p. 275-277 K). functional (B3LYP) (Lee et al. 1988, Becke 1993) at
6-31G(d,p) basis set (Schlegel 1982, Hehre et al. 1972) was
2.2. Instrumentation used. The vibrational frequencies of the optimized molecule
The FT-IR spectrum of the title compound was recorded in were also calculated at the same level of the theory and
the 4000-400 cm-1 region with a Bruker Vertex 80V FT-IR achieved frequencies were scaled by 0.9627 (Merrick et al.
spectrometer using KBr pellets. 2007). A relaxed potential energy surface (PES) scan was
performed on the basis of the optimized geometry of the
Table 1. Crystal data and refinement parameters of the title OH tautomeric form by varying O1-H1 bond distance as a
compound. redundant internal coordinate from 0.99 to 1.85 Å with 18
Formula C15H14Br1N1O2 steps of 0.05 Å. In the PES scan process, all of the remaining
internal coordinates were fully optimized. Furthermore,
Formula weight 320.18
NLO was performed at the same level of theory.
Crystal color Fire brick
Crystal system Monoclinic 3. Results and Discussion
Space group P 21/c 3.1. Description of the Crystal Structure
Z 4 An ORTEP- 3 view of the compound indicating atom
9.6367 (9), 14.1722 (11), numbering scheme with thermal ellipsoids at 30%
a, b, c
10.4610 (10) probability is shown in Fig. 2 and crystal data collection
α, β, γ 90°, 105.790°, 90° and refinement details of the compound are listed in Table
Volume 1374.8 (2) Å3 1. Selected bond lengths, bond angles and torsion angles
obtained from X-ray diffraction are listed in Table 2.
Radiation type MoKα
µ 2.99 mm-1 The title compound contains the six membered rings (C1/
C6 and C9/C14) and the imine frame. Acording to the
Tmax, Tmin 0.4487, 0.1825
X-ray results, the molecular geometry of the compound is
Measured reflections 9184 non-planar with the dihedral angle between the aromatic
Independent reflections 2847 rings of 28.66°. It is also known that Schiff bases may
Reflections with I>2σ(I) 1863 show thermochromism and photochromism depending
on the planarity or non-planarity, respectively (Hadjoudis
Number of parameters 176
et al.1987, Moustakali-Mavridis et al. 1980). Therefore, it
θmax, θmin 26.50°, 2.02° can be said that the title compound displays photochromic
-12 < h < 12, -17 < k < 17, tendency.
Scan range
-13 < l < 12
In general, o-hydroxy Schiff bases exhibit two possible
R[F2 > 2σ(F2)] 0.049
tautomeric forms in the solid state, namely, phenol-imine
wR(F2) 0.088 (OH) that is a tautomeric form has O−H···N intramolecular
S 1.038 hydrogen bond and keto-amine (NH) that is the other
Δρmax, Δρmin 0.339, -0.292 tautomeric form has N−H···O intramolecular hydrogen
Table 2. Selected bond lengths (Å), angles and torsion angles (°) obtained from X-ray diffraction.
Parameters Parameters
C8 C9 1.456 (5) C8 N1 C1 120.8 (3)
N1 C8 1.276 (4) N1 C1 C2 123.9 (3)
N1 C1 1.421 (4) O1 C10 C9 122.6 (3)
C10 O1 1.345 (4) C10 C11 Br1 118.5 (3)
C11 Br1 1.890 (4) C10 O1 H1 102.0 (3)
C13 O2 1.371 (4) O1 H1 N1 157.0 (4)
C15 O2 1.398 (4) N1 C8 C9 10 0.5 (6)
O1 H1 0.804 (1) C2 C1 N1 C8 -26.7 (6)
O1 N1 2.587 (4) C9 C8 N1 C1 176.1 (4)
N1 H1 1.830 (2) O1 C10 C11 Br1 -2.1 (5)
C8 C9 N1 121.5 (4) C8 C9 C10 O1 3.1 (5)
C8 C9 C10 120.4 (3)
bond. As it can be seen in Fig. 2 and Table 2, the molecule Å] and this hydrogen bond which is quite common between
has adopted the phenol- imine tautomeric form due to the the o-hydroxysalicylidene systems generates an S(6) ring
position H1 atom which is located on atom O1. Furthermore, motif (Table 3). The distance between the O1 and N1 atoms
the C10–O1 [1.345(4)Å], C8–C9 [1.456(5)] and C8–N1 is meaningfully shorter than the sum of the van der Waals
[1.276(4)Å] bonds are the most sensitive indicators of the radii for O and N [3.07 Å] (Bondi 1964). The neighboring
tautomeric form of the title molecule. These bond distances molecules interact with each other via weak van der Waals
are in good agreement with literature values (Karadayı et al. interactions in three dimensions.
2003, Yazıcı et al, 2009).
3.2. Optimized Geometries of Tautomers and
In order to investigate the aromaticity of the both rings Intramolecular Proton Transfer Process
which must be aromatic in the phenol- imine form, HOMA
The geometric parameters for (E)-2-bromo-4-methoxy-6-
(harmonic oscillator model of aromaticity) index for the
[(p-tolylimino) methyl] were calculated at B3LYP/6-31G
rings of the molecule is defined by the following equation
(d,p) level of the theory in gas phase and listed in Table
(Kruszewski and Krygowski 1972, Krygowski 1993):
4. As can be seen from Table 2 and Table 4, experimental
HOMA = 1 - ; n / ^ R i - R opt h E
a
n
and theoretical parameters of phenol-imine (OH) form
(1)
2
Table 3. Hydrogen bonding geometry for the titled compound (Å, o).
Table 4. Selected bond lengths (Å), angles and torsion angles (°) in gas phase and various solvents obtained from the DFT/
B3LYP/6-31G(d,p) calculations.
chose the phenol form (Albayrak et al. 2013). In order to is a local minima refers to the NH form of the compound,
investigate the effects on the molecular structure of the in- second and deeper one is a global minima represents the
tramolecular proton transfer a PES scan process was carried stable phenol form. The potential energy needed for the
out for the title compound in the gas phase at the B3LYP/6- transition from phenol form to keto form was determined
31G(d,p) level. The scan process was started from optimized as 5.810 kcal/mol.
enol geometry by selecting O-H bond as redundant internal
The effects of the intramolecular proton transfer on the
coordinate. Dependency of the relative energy of the title
molecular geometry can be seen better via examining the
compound against the O-H bond distance is given in Fig. 4.
changes in HOMA index of C9/C14 ring and indicative
The energy values were calculated relative to the energy of bond lengths for every step in the scan process. During the
stable phenol form. As can be seen from the Fig. 4. there proton transfer, in the indicative bond lengths (C8=N1, C9–
are two minima representing the stable forms. One of them C8 and C10–O1) the changes are observed (Fig.5). These
Table 5. Calculated energies, frontieer orbital energies and dipole moments in gas phase and various solvents.
Figure 4. Relative energy versus the redundant coocrdinate in Figure 5. Indicative bond lengths versus the redundant coordinate
PES scan process. in PES scan process.
changes are due to the changed electronic distrubition of 3.3. Vibrational spectra
the molecule in the transfer process. Bond lengths of stable
The harmonic vibrational frequencies of (E)-2-bromo-
phenol form, C8=N1 (1.291 Å), C9–C8 (1.453 Å) and
4-methoxy-6-[(p-tolylimino) methyl] phenol have been
C10–O1 (1.338 Å) were found as 1.330, 1.403, and 1.263 Å
calculated by using DFT method at 6-31G (d, p) level. It
at the eighteenth step of scan where the stable keto tautomer
is known that there is a systematic error in the calculated
was observed. The figure shows that the intramolecular
harmonic vibrational frequency when it is compared to
transfer process affects the double and single characters of
the experimental fundamental vibrational frequency (Scott
these indicative bonds.
and Radom 1996). Because the quantum mechanical
The changes of HOMA index of C9/C14 and C1/C6 rings calculations are neglected anharmonicity and can not
were calculated at every step of the scan process and they explain properly the electron-electron interactions. As a
are illustrated in Fig 6. As seen in the figure, while the result of the frequency calculations, there are no imaginary
aromaticity level of phenol ring (C9/C14) involving proton values for any frequencies, this means is that the molecule
transfer decreases, the aromaticity level of C1/C6 ring is not has the minimum energy structure at this level of theory.
changed with the scan coordinate from 0.99 to 1.85 Å. In order to improve the agreement between the theoretical
results and the experimentally observed values of those,
all of the calculated frequencies are scaled by 0.9627 for
B3LYP/6-31G (d,p).
Experimental and theoretical FT-IR spectra of the
molecule are shown in Figure 7. Table 6 also summarizes
the experimental and calculated vibrational frequencies
and their assignments. Since O–H stretching vibrations
is sensitive to intramolecular hidrogen bonding this mode
of (E)-2-bromo-4-methoxy-6-[(p-tolylimino) methyl]
were observed at 2000-3000 cm-1 as a broad peak owing
to the formation of strong intramolecular O–H···N
hydrogen bond in the structure. Its value obtained by DFT
calculations is 3156 cm-1. The C=N stretching vibration
band was calculated at 1687 cm-1 with the same level of the
theory while that was observed at 1638 cm-1 experimentally.
A peak observed at 858 cm-1 in the theoretical spectrum was
Figure 6. HOMA indexes of C1/C6 and C9/C14 rings versus the assigned to C–Br stretching vibration. As can be seen from
redundant coordinate in PES scan process. the Figure 7 these bands show the best agreement with their
experimental values.
Table 6. The experimental and the calculated vibrational frecuencies (cm-1) of the molecule.
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