Download as pdf or txt
Download as pdf or txt
You are on page 1of 5

Laboratory Experiment

pubs.acs.org/jchemeduc

Quantifying Protein Concentrations Using Smartphone Colorimetry:


A New Method for an Established Test
Clifford T. Gee,† Eric Kehoe,‡ William C. K. Pomerantz,*,† and R. Lee Penn*,†

Department of Chemistry, University of Minnesota, Minneapolis, Minnesota 55455, United States

Janesville Waldorf Pemberton High School, Janesville, Minnesota 56048, United States
*
S Supporting Information

ABSTRACT: Proteins are involved in nearly every biological


process, which makes them of interest to a range of scientists.
Previous work has shown that hand-held cameras can be used to
determine the concentration of colored analytes in solution, and
this paper extends the approach to reactions involving a color
change in order to quantify protein concentration (e.g., green to
blue). Herein, we describe the successful use of smartphone
colorimetry to quantify protein concentration using two common
colorimetric biochemical methods, the Bradford and biuret assays.
The ease of the experimental setup makes these lab experiments
accessible to a wide range of students and can be used as both
high school and college level laboratory experiments.
KEYWORDS: High School/Introductory Chemistry, First-Year Undergraduate/General, Analytical Chemistry, Biochemistry,
Laboratory Instruction, Hands-On Learning/Manipulatives, Proteins/Peptides, Quantitative Analysis, UV−Vis Spectroscopy

P roteins are large biomacromolecules that play necessary


roles in nearly all biological processes, including cell
growth, metabolism, and differentiation. Consequently, sig-
These methods are especially useful when the protein
concentration in solution cannot be determined by other
techniques e.g., when the protein extinction coefficient is
nificant research efforts are dedicated to studying the biological unknown or is too low for direct determination of the
function of proteins and designing synthetic molecules to concentration based on the protein solution’s absorbance at
modulate the function of proteins in the context of disease. 280 nm.4
High school students encounter proteins in both the life Colorimetric assays are typically performed using a UV−vis
sciences as well as in their chemistry courses [e.g., Next spectrophotometer. In the presence of varying concentrations
Generation Science Standards (NGSS)1]. of protein, absorbance values at 595 and 540 nm are monitored
One example of an interesting protein is the bromodomain in the Bradford and biuret assays, respectively. However, these
containing protein 4, (Brd4). When functioning properly, Brd4 specialized instruments are expensive and may not be available
is a necessary protein for regulating gene transcription and cell in all laboratories such as high school teaching laboratories. To
growth, but when functioning improperly, Brd4 has been linked mitigate this challenge, recent reports have demonstrated the
to cancer,2 a topic covered in life sciences classes and a reality efficacy of hand-held cameras for quantitative colorimetry,
that has impacted many people personally. making colorimetric experiments accessible to a wider range of
Accurate quantification of protein concentration is crucial to students and researchers.5 Smartphone colorimetry has been
studying the roles proteins play in biological processes. used in kinetics experiments with crystal violet,6 quantification
Concentrations are particularly important in biochemical of gold nanoparticles present in dietary supplements,7 and a
experiments (e.g., circular dichroism and enzymatic assays) variety of other experiments.8−12 These examples involve a
for quantitative characterization of protein structure and single color with a colorless blank. The use of camera phone
function. There are several different methods for protein colorimetry with a color change has yet to be explored. Here,
quantification. Some methods are colorimetric assays that we extend quantitative colorimetry to protein assays that
involve the formation of a colored complex. Quantitation is involve color changes and its application to quantify protein
accomplished by determining visible light absorption and using concentration.
Beer’s Law to convert absorbance to concentration by Bradford assays are commonly employed in laboratory
comparison to a standard calibration curve. Two such experiments for introductory biochemistry courses. The
colorimetric assays are the Bradford and biuret assays.3 Using
known standards within concentration ranges that obey Beer’s Received: September 6, 2016
law, one can generate a linear calibration curve that can be used Revised: April 6, 2017
to estimate a protein concentration of an unknown sample. Published: May 3, 2017
© 2017 American Chemical Society and
Division of Chemical Education, Inc. 941 DOI: 10.1021/acs.jchemed.6b00676
J. Chem. Educ. 2017, 94, 941−945
Journal of Chemical Education Laboratory Experiment

Figure 1. Chemical scheme and sample images for protein colorimetric assays. (A) Chemical scheme for Coomassie Blue G-250 which becomes fully
deprotonated in the presence of a protein, yielding a blue color. (B) Sample image of Bradford reagent plus water (left) and Bradford reagent plus
0.04 mg/mL bovine serum albumin (BSA) (right). (C) Chemical scheme for complexation of cupric ions in the presence of peptides and proteins
forming a complex with the amide backbone, resulting in a color change from blue to violet. (D) Sample image of biuret reagent plus water (left) and
biuret reagent plus 0.75 mg/mL BSA (right).

protein-responsive molecule in the Bradford solution, Coo- mL 85% (w/v) phosphoric acid. (3) Add this mixture slowly to
massie Blue G-250, is an environmentally sensitive triphenyl- 850 mL of water. (4) Store away from light at 4 °C. Because
methane dye compound that exists in varying charge states Flinn is a common vendor for high school laboratories, the
depending on the surrounding solution conditions. The biuret reagent was prepared using the Flinn Scientific
hydrophobic interactions provided by the presence of a protein specifications [0.2% (w/v) CuSO4, 30% (w/v) NaOH] for
stabilizes the anionic form of the dye, resulting in color change this reagent. This solution can be made by mixing 100 mg of
from a brownish green, with a maximum absorption at 470 nm CuSO4·5H2O (dissolved in 10 mL of water) and 40 mL of
(cationic form), to a blue color, with a maximum absorption at 37.5% (w/v) NaOH in water. It is important to note that biuret
595 nm (anionic form) (Figure 1A,B). from Flinn contains 30% sodium hydroxide while many other
While the Bradford assay is a dye-based assay, the biuret vendors and recipes employ only 3% (w/v) sodium hydroxide
assay involves the formation of a Cu(II) complex with the with the addition of 0.6% (w/v) potassium sodium tartrate.13
amide backbone present in peptides and proteins. This Both solutions will provide adequate results, but the tartrate-
coordination complex results in a color change from blue containing solution performs significantly better than the
(free Cu2+), with a maximum absorption at 650 nm, to violet solution without it at protein concentrations above 0.5 mg/
(HN···Cu2+···NH), with a maximum absorption at 540 nm mL because it prevents protein precipitation. If tartrate is not
(Figure 1C,D). The bicinchoninic acid (BCA) and Lowry available, citrate may also be used as a substitute to prevent
assays are examples of other copper-based assays that are turbidity (see Supporting Information). While the Bradford
commercially available. reagent is more common in biochemistry laboratories for its
Herein we report the first application of smartphone greater sensitivity to a wider protein concentration range, biuret
colorimetry for protein quantification using two well-known is roughly 10% of the cost of Bradford, making it more
protein assays that involve changes in color as a function of accessible for a high school or a low-budget laboratory. Bovine
protein concentration. The ubiquity of the Bradford assay as a serum albumin (BSA) for the calibration curve was purchased
standard laboratory experiment in biochemistry and the cheap from RPI and used as-is. Brd4 was expressed from recombinant
and accessible nature of the biuret assay combined with the DNA using standard protein expression protocols in BL21
clear color change that occurs upon complexing with protein (DE3) E. coli cells.14
made these two assays ideal for use with smartphone Preparation of Calibration and “Unknown” Solutions
colorimetry. Standard Bradford or biuret solutions for the calibration curve

■ MATERIALS AND METHODS


Preparation of Chemicals
were prepared by diluting 0.10 mg/mL BSA (for Bradford
assay) or 3−10 mg/mL BSA (for biuret assay) with 1.5 mL of
Bradford or biuret solution and water. For preparation of the
calibration standards, 1.5 mL of the Bradford or biuret
The Bradford reagent was prepared with Coomassie Blue G- solutions; 0.1, 0.2, 0.3, 0.4, and 0.5 mL of appropriate protein
250 (Sigma), methanol (Sigma), phosphoric acid (Macron), stock solution; and enough water to yield a final volume of 2.0
and water according to the following protocol: (1) Dissolve 50 mL were added to individual vials. The blank sample was
mg Coomassie Blue G-250 in 50 mL methanol. (2) Add 100 prepared by mixing 1.5 mL of the Bradford or biuret and 0.5
942 DOI: 10.1021/acs.jchemed.6b00676
J. Chem. Educ. 2017, 94, 941−945
Journal of Chemical Education Laboratory Experiment

Figure 2. Photographs of calibration samples plus an unknown sample for smartphone colorimetry. (A) Biuret standards for calibration and
“unknown” sample in front of a white background. (B) Biuret standards for calibration and “unknown” sample in front of a green (129, 255, 0)
background. (C) Biuret standards for calibration and “unknown” sample in front of a yellow-orange (255, 207, 0) background.

Figure 3. Comparison of colorimetric assays by UV−vis spectrophotometry and smartphone colorimetry. (A) Photograph of Bradford assay cuvettes
in front of 595 nm (RGB: 255, 207, 0) colored background. (B) Graph of absorbance (via spectrophotometry) versus protein concentration. (C)
Graph of absorbance (via smartphone colorimetry following R values) versus protein concentration. (D) Photograph of biuret assay cuvettes in front
of 540 nm (RGB: 129,255,0) colored background. (E) Graph of absorbance (via spectrophotometry) versus protein concentration. (F) Graph of
absorbance (via smartphone colorimetry following G values) versus protein concentration. In all plots, blue diamonds refer to protein calibration,
and the red circle indicates the “unknown” sample at its expected concentration.

mL of water. Experiments can all be performed with regular tap equilibration time is important for the color to fully develop.
water. As noted in the sample student guide (Supporting Insufficient equilibration time will often lead to poorer results.
Information), these low volumes of protein solution can be An example of this time-dependent effect is shown in the
delivered into the individual square plastic cuvettes (1 cm path teacher’s guide in the Supporting Information.
length) by counting drops of the solution and weighing the Instrumentation and Setup
sample using a balance after each addition to account for the
actual amounts added. This approach works well since the Cuvettes containing the standard, blank, and “unknown”
densities of each solution and water are all nearly identical. samples were analyzed using both a standard UV−vis
spectrophotometer and smartphone colorimetry. For absorp-
Further, if students do not have access to a balance, counting
tion measurements, samples were analyzed at 595 nm for
drops and converting volume to mass can also provide adequate
Bradford and 540 nm for biuret using a Beckman Coulter DU
data, as noted in the Results section. Absorbance measurements
720 UV−vis spectrophotometer.
were performed 40 min after mixing for the Bradford and 20
min after mixing for the biuret samples in order to ensure full Acquiring Images
development of the color change. The “unknown” protein For smartphone colorimetry, cuvettes were lined up in front of
concentration sample was prepared in a similar manner, with a computer monitor, and images were acquired using the back
the estimated concentration falling within the linear range of facing lens of varying smartphones (Samsung Galaxy S5,
the colorimetric agents. The “unknown” protein concentration iPhone 6). Cuvettes were lined up in front of a computer
in the sample Bradford assays was 0.014 mg/mL Brd4 as monitor with varying background colors matching the wave-
determined by UV absorption (ε280: 26,930 M−1 cm−1) and lengths measured for absorption in addition to a white
1.25 mg/mL BSA by mass in the sample biuret assay. Because background (Figure 2). For Bradford samples, an RGB code
the change in color is a time-dependent process, the of (255, 207, 0) was used, while (129, 255, 0) was used for the
943 DOI: 10.1021/acs.jchemed.6b00676
J. Chem. Educ. 2017, 94, 941−945
Journal of Chemical Education Laboratory Experiment

biuret. These values can be obtained using an online estimating a given protein concentration using Beer’s Law and a
wavelength to RGB conversion tool (e.g., Academo’s Wave- standard calibration curve.
length to Color Relationship15). Smartphone colorimetry data were comparable to data
Data Analysis and Comparison collected using the spectrophotometer (Figure 3B,C). In the
example of the Bradford assay above (Figure 3A−C), the
Absorption data from the spectrophotometer were plotted “unknown” concentration was 0.014 mg/mL, and the UV−vis
using spreadsheet software and fitted to a linear trendline. The absorption measurements yielded an estimated concentration
generated equation was used to estimate the protein of 0.011 mg/mL while a concentration of 0.0090 mg/mL was
concentration. Absorbance measurements from the smartphone estimated via camera phone colorimetry. In the example of the
images were obtained by analyzing RGB (red, green, blue) biuret assay (using the tartrate-containing solution) (Figure
values from images of each sample (intensity range 0−255). A 3D−F), the “unknown” concentration was 1.25 mg/mL, and
variety of software, freeware, and web applications (e.g., Adobe the UV−vis absorption measurements yielded an estimated
Photoshop, ImageJ, Color Code Picker)5 as well as smartphone concentration of 1.32 mg/mL while a concentration of 1.28
applications (e.g., Colorometer for iPhone and ColorMeter mg/mL was estimated via camera phone colorimetry. Images
Free for Android)11 are available for this type of analysis and acquired in front of backgrounds displaying the color matching
provide similar results. Download links can be found in the the maximum absorption wavelength of the color agent yielded
Supporting Information. RGB values can be obtained by more accurate results as compared to images of the samples
analyzing single points or averaging multiple points over a arranged in front of a white display. However, if a backlit
specified area. Single point and area measurements yield nearly background is not available, a plain white background is suitable
identical results, as noted in a previous report.5 for collecting quantitative measurements. Kuntzleman and
Absorbance (A) is calculated from RGB values using the Jacobson also reported good success using colored construction
following formula: paper in lieu of a colored backlit screen for similar types of
⎛ I ⎞ measurements.11
A = −log⎜ n ⎟ The utility of this method lies not only in its efficacy for
⎝ Iblank ⎠ (1) determining protein concentration via the measurement of a
color change but also in its robustness to a range of factors,
Here, In corresponds to the R, G, or B value of each sample, including lighting conditions and picture quality, which can
and Iblank corresponds to the R, G, or B value for the blank. For vary dramatically from one classroom to another. Given the
the Bradford assay, the best results were obtained using the R camera quality found in the average smartphone, this type of
values while for the biuret assay, the best results were obtained protein quantification colorimetry experiment is now more
using the G values. For alternative colorimetric experiments or widely accessible to students who may have previously been
assays, it would be best to follow whichever channel (R, G, or unable to perform such an experiment.
B) provides the greatest dynamic range. These “absorbance” As a final assessment of the suitability of the experiment for a
values were plotted as a function of concentration and fit to a high school classroom as well as the clarity of the instructions
linear trendline to estimate protein concentration of the for the experiment, the method was tested with a group of
“unknown” sample. tenth grade high school chemistry students. The lab was

■ HAZARDS
The Bradford solution is acidic while the biuret solution is
conducted with two different class sizes of 25 and 15 students,
respectively, and run over three 50 min class periods. The first
class period was used to introduce the background for the lab
basic. Both are corrosive and should be handled with care. Both and demonstrate the experimental procedure which can be
solutions should be neutralized appropriately prior to disposal found in the Supporting Information. The second period was
down the drain with excess water. Alternatively, solutions can used to prepare the solutions and capture the image using
be disposed of in separate waste containers as appropriate. smartphones. During the last day, the images were analyzed and
Protective gloves and eyewear (preferably splash proof goggles) the results discussed.
in addition to standard lab-appropriate attire (long pants and In order to ensure the method is easily reproducible in any
closed-toed shoes) should be worn at all times while handling high school setting, a few changes were made from the original
Bradford or biuret reagents. protocol. For high school implementation we used the biuret


and albumin as they are available from Flinn Scientific. Also,
RESULTS because many laboratories may not have access to protein
expression facilities, using an unknown concentration of
Samples from both the Bradford and biuret assays were albumin, or other commercially available proteins (e.g.,
evaluated by a UV−vis spectrophotometer and by smartphone lysozyme or cytochrome C), is a more practical alternative
colorimetry to benchmark a newer technique against an than Brd4. For this study, six groups had access to electronic
established technique. Calibration curves generated R2 values balances with centigram precision. In order to balance time
greater than 0.9, and using the equation generated from fitting a efficiency and reagents, the students worked in groups of five.
linear trendline, the concentration of protein in the “unknown” The two groups without access to balances were provided with
sample was calculated (Figure 3).


a conversion from drops of solution to mass for each of the
solutions.
DISCUSSION Analysis of the students’ data pointed to several areas for
The use of a smartphone camera is effective for quantitative further clarification in the protocol. At this point, all students
colorimetry measurements. It can be used for the appearance of had demonstrated a strong grasp of Beer’s law; however,
color, as previously reported,5−10 and also for a color change, as analysis of the results show that only four of the eight groups
described here. The obtained data were adequate for correctly produced an unknown concentration that agreed within 10% of
944 DOI: 10.1021/acs.jchemed.6b00676
J. Chem. Educ. 2017, 94, 941−945
Journal of Chemical Education Laboratory Experiment

the unknown protein concentration. The remaining four groups by the NSF-CAREER Award CHE-1352091. C.T.G. would like
had considerably larger errors. It should be noted that positive to acknowledge the University of Minnesota Interdisciplinary
results were independent of sample preparation method. In the Doctoral Fellowship.
four groups that yielded accurate results and in the four that
yielded poor data, three groups prepared samples with a
balance and one group counted drops. After reviewing the
■ REFERENCES
(1) Next Generation Science Standards. http://www.nextgenscience.
students’ work, it became clear that some groups whose analysis org/ (accessed Mar. 2017).
fell outside of 10% of the accepted concentration had not taken (2) Filippakopoulos, P.; Qi, J.; Picaud, S.; Shen, Y.; Smith, W. B.;
images of suitable quality for analysis. A common error was Fedorov, O.; Morse, E. M.; Keates, T.; Hickman, T. T.; Felletar, I.;
taking the picture from too far away, leaving the color intensity Philpott, M.; Munro, S.; McKeown, M. R.; Wang, Y.; Christie, A. L.;
in the image washed out, as the area of interest was very bright West, N.; Cameron, M. J.; Schwartz, B.; Heightman, T. D.; La
Thangue, N.; French, C. A.; Wiest, O.; Kung, A. L.; Knapp, S.;
relative to the background. Poor image focus also led to Bradner, J. E. Selective inhibition of BET bromodomains. Nature
unreliable data. To alleviate these problems for future 2010, 468 (7327), 1067−73.
implementation, examples of good and poor images for (3) Thermo Scientific Pierce Protein Assay Technical Handbook, 2nd
students have now been added to the instructional guide ed.; Thermo Fisher Scientific: Waltham, MA, 2010.
which can be found in the Supporting Information. (4) Pace, C. N.; Vajdos, F.; Fee, L.; Grimsley, G.; Gray, T. How to
In general, the instructor felt the results were of similar Measure and Predict the Molar Absorption-Coefficient of a protein.
quality to those from other quantitative methods carried out by Protein Sci. 1995, 4 (11), 2411−2423.
high school students at this level. The use of photocolorimetry, (5) Kehoe, E.; Penn, R. L. Introducing Colorimetric Analysis with
Beer’s Law, and protein topics aligns well with courses Camera Phones and Digital Cameras: An Activity for High School or
General Chemistry. J. Chem. Educ. 2013, 90 (9), 1191−1195.
introducing content that uses the Next Generation Science
(6) Knutson, T. R.; Knutson, C. M.; Mozzetti, A. R.; Campos, A. R.;
Standards, HS-LS1-1, regarding content on protein function, as Haynes, C. L.; Penn, R. L. A Fresh Look at the Crystal Violet Lab with
well as HS-PS4-5 which describes how some technological Handheld Camera Colorimetry. J. Chem. Educ. 2015, 92 (10), 1692−
devices use the principles of wave behavior and wave 1695.
interactions with matter to transmit and capture information (7) Campos, A. R.; Knutson, C. M.; Knutson, T. R.; Mozzetti, A. R.;
and energy. Haynes, C. L.; Penn, R. L. Quantifying Gold Nanoparticle

■ CONCLUSION
Smartphones and other portable cameras were successfully used
Concentration in a Dietary Supplement Using Smartphone Color-
imetry and Google Applications. J. Chem. Educ. 2016, 93 (2), 318−
321.
(8) Montangero, M. Determining the Amount of Copper(II) Ions in
to determine the concentration of a protein sample using assays a Solution Using a Smartphone. J. Chem. Educ. 2015, 92 (10), 1759−
that yield a color change as a function of protein concentration. 1762.
This new method for measuring protein concentrations allows (9) de Morais, C. d. L. M.; Silva, S. R. B.; Vieira, D. S.; Lima, K. M. G.
for greater accessibility to such colorimetric assays for Integrating a Smartphone and Molecular Modeling for Determining
introductory laboratories and laboratories lacking expensive the Binding Constant and Stoichiometry Ratio of the Iron(II)−
equipment like spectrophotometers. This type of experiment Phenanthroline Complex: An Activity for Analytical and Physical
also fits in well with the Science and Engineering Practices from Chemistry Laboratories. J. Chem. Educ. 2016, 93 (10), 1760−1765.
the HS-LS1 section of the NGSS.1 A detailed step-by-step (10) Moraes, E. P.; da Silva, N. S. A.; de Morais, C. d. L. M.; Neves,
procedure for the experiment suitable for use in high school or L. S. d.; Lima, K. M. G. d. Low-Cost Method for Quantifying Sodium
in Coconut Water and Seawater for the Undergraduate Analytical
college settings is provided in the Supporting Information.


Chemistry Laboratory: Flame Test, a Mobile Phone Camera, and
Image Processing. J. Chem. Educ. 2014, 91 (11), 1958−1960.
ASSOCIATED CONTENT (11) Kuntzleman, T. S.; Jacobson, E. C. Teaching Beer’s Law and
*
S Supporting Information Absorption Spectrophotometry with a Smart Phone: A Substantially
Simplified Protocol. J. Chem. Educ. 2016, 93 (7), 1249−1252.
The Supporting Information is available on the ACS
(12) Moraes, E. P.; Confessor, M. R.; Gasparotto, L. H. S. Integrating
Publications website at DOI: 10.1021/acs.jchemed.6b00676. Mobile Phones into Science Teaching To Help Students Develop a
Sample student guide, providing step-by-step instruc- Procedure To Evaluate the Corrosion Rate of Iron in Simulated
tions, as well as some instructor notes (PDF, DOCX) Seawater. J. Chem. Educ. 2015, 92 (10), 1696−1699.


(13) Gornall, A. G.; Bardawill, C. J.; David, M. M. Determination of
serum proteins by means of the biuret reaction. J. Biol. Chem. 1949,
AUTHOR INFORMATION 177 (2), 751−766.
Corresponding Authors (14) Mishra, N. K.; Urick, A. K.; Ember, S. W.; Schonbrunn, E.;
*E-mail: wcp@umn.edu. Pomerantz, W. C. Fluorinated Aromatic Amino Acids Are Sensitive F
NMR Probes for Bromodomain-Ligand Interactions. ACS Chem. Biol.
*E-mail: rleepenn@umn.edu. 2014, 9 (12), 2755−2760.
ORCID (15) Wavelength to Colour Relationship. https://academo.org/demos/
William C. K. Pomerantz: 0000-0002-0163-4078 wavelength-to-colour-relationship/ (accessed Mar. 2017).
Notes
The authors declare no competing financial interest.

■ ACKNOWLEDGMENTS
The authors would like to thank Alex Ayoub for his suggestion
of substituting potassium sodium tartrate with sodium citrate as
a cheaper alternative reagent. This project was funded in part
945 DOI: 10.1021/acs.jchemed.6b00676
J. Chem. Educ. 2017, 94, 941−945

You might also like