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Organic Geochemistry 39 (2008) 945–951

Contents lists available at ScienceDirect

Organic Geochemistry
journal homepage: www.elsevier.com/locate/orggeochem

A comparison of lignin oxidation, enzymatic activity and fungal


growth during white-rot decay of wheat straw
Steven A. Robertson a, Sharon L. Mason b, Ethan Hack b, Geoffrey D. Abbott a,*
a
School of Civil Engineering and Geosciences, Newcastle University, Drummond Building, Newcastle Upon Tyne, NE1 7RU, United Kingdom
b
School of Biology and Psychology, Division of Biology, Newcastle University, Ridley Building, NE1 7RU, United Kingdom

a r t i c l e i n f o a b s t r a c t

Article history: This paper reports a laboratory study where multiple variables have been monitored in
Received 30 September 2007 parallel as a function of white-rot incubation time. A model system with Pleurotus ostreatus
Received in revised form 3 February 2008 growing on unamended wheat (Triticum aestivum) straw under solid-state cultivation con-
Accepted 14 March 2008
ditions was used to investigate changes in lignin oxidation, amounts of the fungal bio-
Available online 4 April 2008
marker ergosterol and activity of manganese peroxidase (MnP) at regular intervals over
84 days. Lignin oxidation was monitored with thermally assisted hydrolysis and methyla-
tion (THM) using tetramethylammonium hydroxide (TMAH) where 3,4-dimethoxybenzoic
acid, methyl ester (G6) to 3,4-dimethoxybenzaldehyde (G4) [Ac/Al]G and 3,4,5-trimethoxy-
benzoic acid, methyl ester (S6) to 3,4,5-trimethoxybenzaldehyde (S4) [Ac/Al]S were used as
relative lignin decomposition state proxies. [Ac/Al]G, [Ac/Al]S and ergosterol production
show little change during the first 21 days of incubation. MnP activity, however, rises rap-
idly and peak activity is reached during the same time interval. This is followed by an
increase in both [Ac/Al]G, [Ac/Al]S and ergosterol formation where most of the increase
in these variables takes place after 21 days. Therefore a rapid early rise in manganese-
dependent peroxidase activity precedes significant changes both in lignin oxidation and
fungal growth. We have demonstrated that it is possible to analyse lignin oxidation using
THM in the presence of TMAH and, in the same system, measure enzyme activity and
amounts of fungal biomarkers as a function of incubation time. This approach will be useful
when investigating compositional changes in litter and soil layers.
Ó 2008 Elsevier Ltd. All rights reserved.

1. Introduction Martínez et al., 1994; Hakala et al., 2004) and to degrade


pollutants having structures related to that of lignin (e.g.
Lignin is a complex three-dimensional biopolymer Reddy, 1995; Pointing, 2001). The activity of white-rot fun-
formed by dehydrogenation of up to three types of precur- gi also represents a key step in the global carbon cycle and
sor alcohol with cinnamyl backbones (Adler, 1977). Its this influences the forms in which carbon is released from
structure is resistant to effective, rapid degradation by lignocellulosic macrostructures such as tree trunks and
most biotic processes and its location in the cell walls of grass stems (Hammel, 1997). This release of carbon is a
many land plants lends resistance to these structures. biotic process and has been shown in the laboratory to
White-rot basidiomycete fungi have the ability to degrade vary with time as the fungi grow, decomposing the lignin
lignin extensively (Kirk and Farrell, 1987). As such, white- component (e.g. Hedges et al., 1988), and producing en-
rot fungi have received considerable attention for their po- zyme suites (e.g. Valmaseda et al., 1991). An investigative
tential both to remove lignin in industrial applications (e.g. approach that links together these different processes al-
lows interactions between the variables to be observed.
* Corresponding author. Tel.: +44 (0) 191 222 6608; fax: +44 (0) 191
Understanding how the products of lignin degradation
222 5431. change during the stages of the fungal life cycle is a neces-
E-mail address: geoff.abbott@ncl.ac.uk (G.D. Abbott). sary step in improving our knowledge of the dynamics of

0146-6380/$ - see front matter Ó 2008 Elsevier Ltd. All rights reserved.
doi:10.1016/j.orggeochem.2008.03.017
946 S.A. Robertson et al. / Organic Geochemistry 39 (2008) 945–951

lignin-derived carbon in soils. This is important because re- (Chemical Data Systems, USA) fitted with a platinum coil
cent studies have suggested that lignin from plant residues probe and a CDS1500 valved interface. Homogenized,
is not as recalcitrant in soil as conventionally perceived freeze-dried cultivation solids (0.2 mg) were weighed into
(Rasse et al., 2006). Numerous authors have described quartz pyrolysis tubes plugged with glass wool. A volume
changes over time in one or more parts of the fungal deg- of TMAH solution (25% w/w in methanol) was added
radation process and with various white-rot fungi or com- immediately before thermochemolysis to give a TMAH/
binations of fungi (e.g. Hedges et al., 1988; Vane et al., cultivation solids ratio of 10/1 (w/w). Prepared tubes were
2001b; Chi et al., 2007), although in some cases the studies then loaded into the pyroprobe and thermochemolysis
made use of substrates plus additional nutrients, including performed at 600 °C for 10 s (20 °C/ms probe heating pro-
nitrogen sources (e.g. Valmaseda et al., 1991). In this study gramme) with the products passing into an HP 5890 gas
we have made use of a model system where the white-rot chromatograph (Agilent, USA) with an open split and a
fungus Pleurotus ostreatus is grown on wheat (Triticum aes- 30 m HP5 column (0.25 mm internal diameter, 0.25 lm
tivum) straw under solid-state conditions, without addi- film thickness). The carrier gas was helium at a flow rate
tional nutrient sources. This has allowed us to track the of 1 ml/min. The oven temperature was held at 40 °C for
progress of lignin oxidation using thermally assisted 10 min and then increased at 5 °C/min to 300 °C where it
hydrolysis and methylation (THM) with tetramethylam- was maintained for 3 min. Product detection was carried
monium hydroxide (TMAH), which is also known as TMAH out using an HP 5000 series mass selective detector (Agi-
thermochemolysis (Hatcher et al., 1995), along with lent, USA) in full scan mode (m/z 50–700). The naming of
changes in the amounts of ergosterol ([22E]-ergosta- THM products follows the conventions established by
5,7,22-trien-3b-ol, a fungal biomass proxy) and manga- Hatcher et al. (1995), Clifford et al. (1995) and del Rio
nese-dependent enzyme activity over time, in a system et al. (1998). Two replicates were analysed for each point
that represents the conditions likely to be found in envi- in the time series. A table showing the THM product
ronmental material such as lignocellulosic macrostruc- assignments with their characteristic mass spectral frag-
tures in soil litter layers. ment ions (Vane et al., 2001a) and a figure of their structures
(Vane et al., 2001b) have been published by our group.

2. Materials and methods


2.4. Ergosterol extraction

2.1. Fungal incubation


Ergosterol extraction was performed using a method
based on a combination of techniques described by Stahl
Wheat (T. aestivum L.) straw was supplied by Goodwills
and Parkin (1996) and Eash et al. (1996). Homogenized,
Ltd. (Ponteland, Northumberland, UK). Any remaining ears
freeze-dried cultivation solids (250 mg) were weighed into
were removed from the straw and a mixture of stem and
30 ml screw topped vials and hydrated with 2 ml
leaf material was divided into 2 cm lengths. Straw (4 g
15 MX cm distilled water. An aliquot (100 ll) of a 5a-
dry weight) was then placed into 250 ml amber glass jars
androstan-3b-ol recovery standard (0.52 mg/ml in dichlo-
(separate jars were used for each time point in the series)
romethane) was added to each 30 ml vial. Methanol
and soaked in 100 ml 15 MX cm distilled water for 2 h;
(10 ml) and 4 ml potassium hydroxide in ethanol (4 g solid
84 ml of the excess water was then removed, leaving be-
potassium hydroxide in 100 ml 95% v/v ethanol/water)
hind a solid residue. The jars were capped with aluminium
were added to each sample, and the samples ultrasonically
foil and pasteurised at 62.5 ± 2.5 °C for 4 h followed by
agitated for 5 min in a Hilsonic ultrasonic bath (Hilbre
52.5 ± 2.5 °C for 3 days. Jars were inoculated with 0.2 g of
Ultrasonics Ltd., UK). The vials were heated for 2 h at
P. ostreatus grain spawn (Ann Miller’s Speciality Mush-
85 °C and immediately cooled by immersion in cold water.
rooms Ltd., Inverurie, Aberdeenshire, UK) and incubated
n-Hexane (2 ml) was added to each vial and the vials were
at 25 °C and ambient humidity in the dark. Jars were re-
rotated end over end for 10 min at 48 r.p.m. The phases
moved for analysis after 7, 14, 21, 28, 42, 56 and 84 days.
were separated by centrifugation at 1000 g for 3 min. The
hexane layer was transferred to autosampler vials, and re-
2.2. Separation of extracellular fluid and incubation solids
duced in volume under a stream of dry nitrogen. The
hydrocarbon 5a-androstane internal standard (100 ll of a
Extracellular fluid was separated from the incubation
0.53 mg/ml solution in dichloromethane) was added and
solids (comprising degraded straw and fungal mycelium)
the mixture was derivatised using N,O-bis(trimethyl-
by centrifugation through muslin in a Centaur 2 swing-
silyl)trifluoroacetamide (BSTFA, purum P 98.0%). GC anal-
ing-bucket centrifuge (MSE, UK) at 1600g for 10 min. Fol-
ysis was performed using an HP 6890 autosampler
lowing extraction of the fluid the remaining solids were
connected to an HP 5890 gas chromatograph with an open
freeze-dried and homogenized with a Cyclotec 1092 sam-
split, 30 m DB5 column (0.25 mm internal diameter,
ple mill (Tecator, Sweden) to pass through a 63 lm mesh.
0.1 lm film thickness), hydrogen carrier gas (2 ml/min)
and a flame ionisation detector. The oven temperature
2.3. Thermally assisted hydrolysis and methylation (THM) in was held at 50 °C for 2 min and then increased at 4 °C/
the presence of tetramethylammonium hydroxide (TMAH) min to 300 °C where it was maintained for 20 min. Mix-
tures of pure standards and pure ergosterol were analysed
THM was performed on line using a pulsed mode open alongside the samples for calculation of relative response
pyrolysis system, specifically a CDS 1000 pyroprobe unit factors and for peak identification. Three replicates were
S.A. Robertson et al. / Organic Geochemistry 39 (2008) 945–951 947

analysed for each point in the time series. Data was ana- taining 30 ll of 6.5 M sodium hydroxide. After terminating
lysed using Atlas 8.1 software (Thermo Electron Corpora- the reaction, the absorbance of each 1 ml solution was
tion, USA). measured at 610 nm using a Unicam 8625 UV/Visible spec-
trophotometer (Unicam Ltd., UK) and the absorbance was
2.5. Enzyme assay plotted as a function of time (0–15 min). Replicates were
carried out in the absence of manganese sulphate to check
MnP activity was assayed using oxidation of phenol red for manganese-independent activity and blanks were run
and a modification of the method of de Souza-Cruz et al. with 15 MX cm distilled water in place of the sample
(2004). The analyses were performed in duplicate. extract.
1.25 ml 20 mM sodium succinate buffer (pH 4.5), 1.5 ml
50 mM sodium lactate, 0.5 ml 1.0 M manganese sulfate, 3. Results and discussion
0.5 ml 1 g/l phenol red and 0.25 ml 2.0 mM hydrogen per-
oxide were placed in a glass beaker. At time zero, 0.5 ml of 3.1. Analysis of lignin
sample extract (50 ll of extract + 450 ll of deionised
water) was added to the beaker. After 0, 5, 10 and 3.1.1. Lignin oxidation during growth of P. ostreatus
15 min, 1 ml aliquots were removed and the reaction ter- In common with other studies using THM with TMAH to
minated by adding it to a 1.5 ml microcentrifuge tube con- investigate lignin degradation by fungi (e.g. Filley et al.,

100 G18
Relative intensity (%)

Day 7
P18

G14 S14
S15
G6 G15
G3 S4
G4 S6

100 G18
Relative intensity (%)

Day 42
P18

G14
G15 S14
G6 S6
G3 S4 S15
G4

100 P18 G18


Relative intensity (%)

Day 84
G3
S14
G4 S6
G6
S4
G14
G15
S15

25 30 35 40 45 50
Retention time (min)
Fig. 1. Partial chromatograms of the total ion current (TIC) of the THM products from day 7, day 42 and day 84 during the degradation of wheat straw by
Pleurotus ostreatus under solid-state cultivation conditions. The naming of the THM products follows the conventions established by Clifford et al. (1995)
and del Rio et al. (1998).
948 S.A. Robertson et al. / Organic Geochemistry 39 (2008) 945–951

2000; Vane et al., 2001a), a suite of THM products was At long incubation times, however, the relative mea-
identified and their distributions changed with increasing surement errors were large because the absolute amounts
incubation time (Fig. 1). From the suite of products, we of the respective TMH products were very small. This
have chosen four that have been used to indicate lignin meant that there were large measurement errors espe-
oxidation in previous studies through the measurement cially after 84 days incubation. This made it impossible to
of ratios highlighting lignin side chain oxidation. The ratio extract quantitative information of statistical significance
of 3,4-dimethoxybenzoic acid, methyl ester to 3,4-dime- from plotting G(S)6/(G(S)14 + G(S)15) as a function of
thoxybenzaldehyde [Ac/Al]G (G6/G4, Fig. 2) has been used incubation time.
to indicate lignin oxidation in guaiacyl lignin sub-units
(e.g. Hatcher et al., 1995) and the ratio of 3,4,5-trimethoxy- 3.1.2. The [Ac/Al]G and [Ac/Al]S variables
benzoic acid, methyl ester to 3,4,5-trimethoxybenzalde- [Ac/Al]G and [Ac/Al]S have been used as relative
hyde [Ac/Al]S (S6/S4, Fig. 2) to indicate oxidation in decomposition state proxies for guaiacyl and syringyl lig-
syringyl moieties (e.g. Hedges et al., 1985). Fig. 2 shows nin monomers respectively (Filley et al., 2006). Filley et al.
that [Ac/Al]G and [Ac/Al]S increase with increasing incuba- (2006) also advise that caution needs to be exercised
tion time. There is, however, no significant increase in when acid/aldehyde ratios are used to infer fungal alter-
either proxy during the initial 21 days of incubation time. ation of lignin because of the potential contribution of
[Ac/Al]G takes a value of between  0.3 and  0.4 whereas 3,4,5-trimethoxybenzoic acid from hydrolysable tannins
[Ac/Al]S is between  1 and  1.1 in this same time inter- to S6. However, wheat straw contains neither condensed
val. [Ac/Al]G then rises from 0.383 ± 0.003 at 21 days to nor hydrolysable tannins (Mueller-Harvey, 2001 and per-
0.966 ± 0.035 after an incubation time of 84 days. [Ac/Al]S sonal communication) so interference with the [Ac/Al]S
increases from 1.12 ± 0.07 at 21 days to 2.50 ± 0.08 at proxy is not an issue here. In addition, changing the
84 days. Fig. 2, therefore, clearly shows that most lignin THM conditions (e.g. time or temperature) has been
oxidation occurs after 21 days, with the two proxies more shown to affect the absolute yields of G4 and G6 (Kling-
than doubling between 21 and 84 days incubation. berg et al., 2005), but with the use of a constant set of
The ratio of 3,4-dimethoxybenzoic acid, methyl ester conditions, changes in [Ac/Al]G can be reliably observed
(G6) to the sum of threo and erythro 1-(3,4-dimethoxy- over time. We are confident, therefore, that in this study
phenyl)-1,2,3-trimethoxypropane (G14 and G15) has been the time dependence of [Ac/Al]G and [Ac/Al]S represents
used to indicate oxidative cleavage of the side chain of gua- increasing extent of lignin oxidation during the growth
iacyl lignin sub-units during fungal degradation (e.g. Filley of P. ostreatus.
et al., 2006) and the ratio of 3,4,5-trimethoxybenzoic acid,
methyl ester (S6) to the sum of threo and erythro 1-(3,4,5- 3.2. Ergosterol
trimethoxyphenyl)-1,2,3-trimethoxypropane (S14 and
S15) used to indicate cleavage of the side chain of syringyl Ergosterol is a prominent membrane sterol in all eumy-
sub-units. On comparison of the 84 day chromatogram cotan groups except chytrids, rusts and some yeasts and,
with the 7 day and 42 day TIC traces (Fig. 1), the peak areas since it is not a vascular plant sterol, it is used to indicate
of both G6 and S6 have increased relative to those of fungal colonisation as well as to measure fungal mass in
(G14 + G15) and (S14 + S15) respectively after 84 days decaying litter (Newell, 1992).
incubation. This is therefore good qualitative evidence for In this study, ergosterol amounts (measured as milli-
side chain oxidation in the straw lignin. grams ergosterol per gram freeze-dried cultivation solids)
do not change significantly (within experimental error) be-
fore 21 days have elapsed and then increase threefold
throughout the remaining incubation period (Fig. 3), which
indicates that the fungus is actively accumulating biomass
between about 21 and 84 days.
Stahl and Parkin (1996) note that a degree of error is in-
volved when living fungal biomass is estimated from
ergosterol content alone and recommend that ergosterol
measurements be combined with staining methods to give
an indication of living and non-living fungal biomass in
soils. In addition, Zhao et al. (2005) report that fungal bio-
mass is decomposed more rapidly than ergosterol in soils
following fungal death. They suggest that ergosterol mea-
surements are not, therefore, a good indicator of living fun-
gal biomass, although this suggestion is not universally
accepted (Young et al., 2006; Zhao et al., 2006). However,
the present study involves actively-growing mycelium col-
Fig. 2. Acid/aldehyde ratios ([Ac/Al]) in THM products from wheat straw onising a large mass of substrate. Problems associated with
degraded by Pleurotus ostreatus under solid-state conditions. (N) ratio of the presence of non-living fungal biomass will be reduced,
3,4-dimethoxybenzoic acid, methyl ester (G6) to 3,4-dimethoxybenzal-
along with the degree of error noted by Stahl and Parkin

dehyde (G4); ( ) 3,4,5-trimethoxybenzoic acid, methyl ester (S6) to 3,-
4,5-trimethoxybenzaldehyde (S4). Error bars are plus or minus one (1996). Thus, ergosterol amounts should provide a suitable
standard error of the mean for two replicates. proxy for fungal biomass in this instance.
S.A. Robertson et al. / Organic Geochemistry 39 (2008) 945–951 949

0.7

0.6
Ergosterol amounts (mg/g)

0.5

0.4

0.3

0.2

0.1

0
0 10 20 30 40 50 60 70 80 90
Time (days)

Fig. 3. Ergosterol ([22E]-ergosta-5,7,22-trien-3b-ol) amounts (mg ergosterol/g freeze-dried solids) measured during cultivation of Pleurotus ostreatus on
wheat straw. Error bars are plus or minus one standard error of the mean for three replicates.

3.3. Manganese-dependent peroxidase activity imum value after 84 days incubation (Fig. 4). A maximum
in the time course of manganese peroxidise production
Under appropriate conditions, P. ostreatus can carry out has also been observed in solid-state cultures of the
Mn-independent oxidation of phenol red (Shin et al., white-rot fungus Lentinula edodes on corn cob powder
1997). The activity measured in the present study is man- (Gandolfi Boer et al., 2004).
ganese-dependent, since repeating the enzyme assay in the Fungi use several different enzyme systems to degrade
absence of Mn2+ revealed little or no phenol red oxidation. lignin. Pleurotus species were reported to belong to a group
In contrast to lignin oxidation and ergosterol concentra- of organisms that produces manganese peroxidase and lac-
tion, manganese-dependent peroxidase activity begins to case but not lignin peroxidase, the classic lignin-degrading
rise immediately from zero at time = 0 days to a maximum enzyme extensively studied in Phanerochaete chrysosporium
at about 14 days and then decreases to about half its max- (Hatakka, 1994). Camarero et al. (1999) showed that in

12.0

11.0

10.0
MnP activity/g of dry straw

9.0

8.0

7.0

6.0

5.0

4.0

3.0

2.0

1.0

0.0
0 10 20 30 40 50 60 70 80 90
Time (days)

Fig. 4. Manganese-dependent peroxidase activity per gram dry straw (change in absorbance at 610 nm per minute due to oxidation of phenol red) in the
extracellular fluid extracted during solid-state cultivation of Pleurotus ostreatus on wheat straw. Error bars are the squared upper and lower limits of the 95%
confidence intervals for square root data.
950 S.A. Robertson et al. / Organic Geochemistry 39 (2008) 945–951

Pleurotus eryngii, a major contributor to manganese-depen- wall polysaccharides can occur. Ferraz et al. (2003) report
dent peroxidase activity is an enzyme that they named such a mechanism during the degradation of Eucalyptus
versatile peroxidase. Unlike the more specific manganese grandis wood by the white-rot fungus Ceriporiopsis
peroxidase first described in P. chrysosporium, this enzyme subvermispora.
can oxidise a wide range of substrates including the char-
acteristic lignin peroxidase substrate veratryl alcohol,
4. Conclusions
although it is most active in the presence of Mn2+ (Camare-
ro et al., 1999; Ruiz-Dueñas et al., 2001). In P. ostreatus,
Lignin degradation does not occur in isolation but pro-
three distinct ‘‘manganese peroxidase” isozymes (MnP1,
ceeds via an array of processes including fungal metabo-
MnP2, and MnP3) have been identified (summarised by
lism, growth, resource capture and dispersal. We have
Kamitsuji et al., 2004) which are all of the versatile perox-
demonstrated that it is possible to analyse lignin oxidation
idase type (Martínez, 2002). MnP2 has much greater man-
using THM in the presence of TMAH and, in the same sys-
ganese-independent activity than MnP3 (Kamitsuji et al.,
tem, measure enzyme activity and fungal growth as a func-
2004; Kamitsuji et al., 2005). The manganese-dependent
tion of incubation time. When P. ostreatus is grown on
assay used in the present study detects the combined
unamended wheat straw, a rapid early rise in manga-
activity of all forms. Valmaseda et al. (1991) did not detect
nese-dependent peroxidase activity precedes significant
MnP activity during growth of P. ostreatus on wheat straw,
changes in lignin oxidation and fungal growth. This ap-
possibly due to the use of different growth conditions, in
proach will be useful when investigating compositional
particular the inclusion of a nitrogen source.
changes in litter and soil layers and experiments are now
underway in our laboratory to include additional fungi
3.4. Lignin oxidation during growth of P. ostreatus
and lignocellulosic substrates.

A great deal of effort has been spent studying the fungal


oxidation of lignin with a view to optimising activity for Acknowledgements
industrial, agricultural or pollution control processes (e.g.
Martínez et al., 1994; Li et al., 2001; Gandolfi Boer et al., This work was partly funded by the Natural Environ-
2004; Chi et al., 2007). Several of these studies have linked ment Research Council (NERC) through a studentship for
together lignin alteration, enzyme activity, and other as- SAR. The authors would like to thank P. Donohoe, B. Bowler
pects of the oxidation process over time. In most instances and I. Harrison for assistance with GCMS and GC. The paper
where several parts of the oxidation process (e.g. enzymes, benefitted from useful and constructive comments made
biomass and lignin content) have been studied at the same by an anonymous reviewer and P. Greenwood.
time (e.g. Chi et al., 2007), lignin has only been character-
ised at a bulk, not a molecular, level. From a geochemical Guest Associate Editor—H. Knicker
perspective, the aim of studying lignin oxidation is not to
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