Table S3.

List of all isolates used in the study with the sequence types, drug resistance profiles and biochip analysis data
MIC (mg/L) Mutations detected by microarray
Sample No. NG-MAST
type Penicillin Tetracycline Ciprofloxacin penA ponA rpsJ gyrA parC
07/15/001 1544 0.5 0.5 0.004 D345a L421P wt D95G S87R
07/15/002 12531 0.12 0.12 0.015 D345a wt wt wt wt
07/15/003 807 0.12 0.5 0.002 D345a wt wt wt wt
07/15/004 12529 0.25 0.06 0.004 D345a wt wt wt wt
07/15/005 1580 0.015 0.5 0.004 wt wt wt wt wt
07/15/006 12444 0.015 0.25 0.002 wt wt wt wt wt
07/15/007 12447 0.25 0.5 16 D345a L421P V57M S91F+D95G S87R
07/15/008 5042 0.03 0.5 0.008 wt wt wt wt wt
07/15/009 12539 0.06 0.5 0.004 D345a L421P V57M wt wt
07/15/010 12531 0.015 0.25 0.03 D345a wt wt wt wt
07/15/011 12524 0.25 4 16 D345a L421P V57M S91F+D95G S87R
07/15/012 9476 0.25 0.5 4 D345a L421P V57L S91F+D95G S87R+E91G
07/15/013 9476 0.25 0.5 8 D345a L421P V57M S91F+D95G S87R
07/15/014 9476 0.25 0.5 8 D345a L421P V57M S91F+D95G S87R
07/15/015 9476 0.25 0.25 8 D345a L421P wt S91F+D95G S87R
07/15/016 9476 1 0.5 8 D345a L421P V57M S91F+D95G S87R
07/15/017 1544 0.06 0.25 0.004 D345a wt wt wt wt
07/15/018 12529 0.06 0.25 0.004 D345a wt wt wt wt
07/15/019 9476 0.25 0.5 8 D345a L421P V57L S91F+D95G S87R
07/15/020 3329 0.25 0.5 16 D345a L421P V57M S91F+D95G S87R
07/15/021 12557 0.03 0.25 0.008 D345a wt wt wt wt
07/15/022 9660 0.015 0.5 0.004 wt wt wt wt wt
07/15/023 12530 0.12 0.06 0.004 D345a wt wt wt wt
07/15/024 1544 0.12 0.25 0.002 D345a wt wt wt wt
07/15/025 5042 0.015 0.25 0.008 wt wt wt wt wt
07/15/026 807 0.06 0.06 0.004 D345a wt wt wt wt
07/15/027 12447 0.25 0.5 16 D345a L421P V57M S91F+D95G S87R
07/15/028 12531 0.06 0.25 0.008 D345a wt wt wt wt
07/15/029 9476 0.25 0.5 8 D345a L421P V57M S91F+D95G S87R
07/15/030 9476 0.25 1 16 D345a wt V57M S91F+D95G S87R
07/15/031 12558 0.25 0.25 4 D345a L421P V57M S91F+D95N wt
07/15/032 12531 0.12 0.06 0.03 D345a wt wt wt wt
07/15/033 1043 0.5 2 0.06 D345a wt V57M wt wt
07/15/034 9499 0.25 0.5 8 D345a L421P V57M S91F+D95G S87R
07/15/035 9476 0.25 0.5 4 D345a L421P V57M S91F+D95G S87R
07/15/036 807 0.06 0.25 0.008 D345a wt wt wt wt
07/15/037 12531 0.06 0.5 0.004 D345a wt wt wt wt
07/15/038 1580 0.015 0.12 0.004 wt wt wt wt wt
07/15/039 12524 1 1 16 D345a L421P V57M S91F+D95G S87R
07/15/040 387 0.25 0.25 16 D345a wt wt wt wt
07/15/041 12444 0.06 0.5 0.004 wt wt wt wt wt
07/15/043 12529 0.12 0.25 0.008 D345a wt wt D95G wt
07/15/044 1544 0.12 0.5 0.004 D345a wt wt wt wt
07/15/046 12555 0.5 0.5 4 D345a L421P V57M S91F+D95G S87R
07/15/047 9476 0.25 1 8 D345a L421P V57M S91F+D95G S87R
07/15/048 9476 0.5 0.5 4 D345a L421P V57M S91F+D95G S87R
07/15/049 9480 0.25 0.06 0.5 D345a wt wt wt wt
07/15/050 12555 0.25 0.5 8 D345a L421P V57L S91F+D95G S87R
07/15/051 12560 0.12 0.25 0.004 wt wt wt wt wt
07/15/052 12603 0.03 0.25 0.002 wt wt wt wt wt
07/15/053 1544 0.25 0.12 0.002 D345a wt wt wt wt
07/15/054 9476 0.5 2 4 D345a L421P wt S91F+D95G S87R
07/15/055 807 0.12 0.12 0.002 D345a wt wt wt wt
07/15/056 12531 0.5 0.12 0.002 D345a wt wt wt wt
07/15/057 1544 0.25 0.5 0.008 D345a wt wt wt wt
07/15/058 12602 0.015 0.06 0.004 wt wt wt wt wt
07/15/059 1531 0.12 0.25 0.004 D345a wt wt wt wt
07/15/060 807 0.03 0.12 0.004 D345a wt wt wt wt
07/15/061 12557 0.015 0.5 0.004 D345a wt wt wt wt
07/15/062 9476 0.25 0.5 8 D345a L421P V57M S91F+D95G S87R
07/15/063 387 0.015 0.06 0.004 wt wt wt wt wt
07/15/064 9476 0.5 0.5 8 D345a L421P V57M S91F+D95G S87R
09/15/001 12448 0.015 16 0.008 wt wt wt wt wt
09/15/002 12448 0.5 8 4 wt wt wt wt wt
09/15/003 12445 1 1 8 D345a L421P V57M S91F+D95G S87R
09/15/004 12445 0.25 2 16 D345a L421P V57L S91F+D95G S87R
09/15/005 12540 1 2 0.015 D345a L421P wt wt S87R
09/15/006 1993 0.015 0.5 0.002 wt wt wt wt wt
12/15/001 5941 0.12 0.25 0.008 D345a wt wt wt wt
12/15/002 807 0.12 0.12 0.008 D345a wt wt wt wt
12/15/003 5714 0.015 0.12 0.008 D345a wt wt wt wt
12/15/004 807 0.06 0.06 0.004 D345a wt wt wt wt
12/15/005 13060 0.25 0.5 8 D345a L421P V57M S91F+D95G S87R
12/15/006 807 0.12 0.5 0.008 D345a wt wt wt wt
12/15/008 1993 0.015 0.05 0.004 wt wt wt wt wt
12/15/010 1993 0.015 0.06 0.002 wt wt wt wt wt
19/15/001 12449 0.5 2 16 D345a L421P V57M S91F+D95G S87R
19/15/002 12446 1 2 32 D345a L421P V57M S91F+D95G S87R
19/15/003 12445 0.12 0.5 0.015 D345a L421P V57M S91F+D95G S87R
19/15/004 5714 0.015 0.5 0.015 wt wt wt wt S87R
19/15/005 12450 1 2 16 D345a L421P V57L S91F+D95G wt
19/15/006 12451 1 2 16 wt L421P V57L S91F wt
19/15/007 1993 0.015 1 0.004 wt wt wt wt wt
19/15/008 12559 1 2 0.008 D345a wt V57M wt wt
19/15/009 2875 1 2 64 D345a L421P V57M S91F+D95G S87R
19/15/010 13058 0.5 2 8 D345a L421P V57M S91F+D95G S87R
19/15/011 12446 0.5 2 64 D345a L421P V57M S91F+D95G S87R
19/15/012 13055 0.5 0.03 8 D345a L421P V57M S91F+D95G S87R
19/15/013 13055 0.5 2 8 D345a L421P V57M S91F+D95G S87R
19/15/014 12446 0.5 4 32 D345a L421P V57M S91F+D95G S87R
19/15/015 13061 0.015 0.25 0.008 D345a L421P V57M S91F+D95G S87R
19/15/016 9834 0.5 1 16 wt wt wt wt wt
20/15/001 9576 0.12 0.12 0.004 D345a wt wt wt wt
20/15/002 12601 0.5 2 4 D345a L421P V57M S91F+D95G S87R
20/15/003 12600 0.015 0.03 0.002 wt wt wt wt wt
20/15/004 1407 0.5 2 16 D345a L421P V57M S91F+D95G S87R
20/15/005 11335 0.06 0.12 0.002 D345a wt wt wt wt
20/15/006 12559 0.015 0.06 0.002 wt wt wt wt wt
21/15/001 12528 0.25 1 16 D345a L421P V57M S91F+D95N E91G
21/15/002 12532 0.25 0.5 8 D345a L421P V57M S91F+D95G S87R
21/15/003 2694 0.5 2 0.5 D345a L421P wt wt wt
21/15/004 1993 0.015 0.06 0.004 D345a wt V57M wt wt
21/15/005 13056 0.5 1 8 D345a L421P wt wt wt
21/15/006 13057 0.5 1 8 D345a L421P V57M S91F wt
21/15/007 13056 0.5 1 8 D345a L421P V57M S91F wt
28/15/001 9570 0.015 0.06 0.5 D345a wt wt wt wt
28/15/002 9570 0.06 0.12 0.004 D345a wt wt wt wt
28/15/003 9570 0.015 0.5 0.004 D345a wt wt wt wt
28/15/004 9570 0.015 0.06 0.004 D345a wt wt wt wt
28/15/005 9570 0.015 0.12 0.002 D345a wt wt wt wt
36/15/001 807 0.06 0.06 0.008 D345a wt wt wt wt
36/15/002 807 0.03 0.06 0.008 D345a wt wt wt wt
36/15/003 5792 0.25 0.5 0.002 D345a wt V57M wt wt
36/15/004 5792 0.25 0.5 0.002 D345a wt V57M wt wt
36/15/005 5792 0.25 0.5 0.002 D345a wt V57M wt wt
36/15/006 13059 0.06 0.06 0.002 D345a L421P wt wt wt
36/15/007 13054 0.06 0.25 0.008 D345a wt wt wt wt
36/15/008 13054 0.06 0.12 0.004 D345a wt wt wt wt
36/15/009 13054 0.06 0.5 0.002 D345a wt wt wt wt
41/15/001 5714 0.015 0.25 0.008 wt wt wt wt wt
41/15/002 5714 0.015 0.5 0.002 D345a wt wt wt wt
41/15/003 12556 2 4 8 D345a L421P V57M S91F+D95G S87R
41/15/004 5714 0.015 0.25 0.002 wt wt wt wt wt
41/15/005 5714 0.015 0.12 0.002 wt wt wt wt wt
 1 2 3 4 5 6 7 8 9
07/15/00507/15/00207/15/00807/15/00307/15/02207/15/02307/15/02407/15/02707/15/032
 10 11 12 13 14 15 16 17 18 19
07/15/03307/15/06107/15/03507/15/01307/15/06207/15/01407/15/01207/15/03707/15/04907/15/039
 20 21 22 23 24 25 26 27 28 29
07/15/04007/15/04807/15/00907/15/05107/15/04607/15/04407/15/04707/15/06407/15/00107/15/019
 30 31 32 33 34 35 36 37 38 39
07/15/01007/15/02007/15/05209/15/00309/15/00409/15/00109/15/00221/15/00121/15/00421/15/002
 40 41 42 43 44 45 46 47 48 49
41/15/00241/15/00319/15/00119/15/00219/15/00319/15/00919/15/00519/15/00612/15/00212/15/003
 50 51
20/15/00220/15/001