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Medical Hypotheses 114 (2018) 13–17

Contents lists available at ScienceDirect

Medical Hypotheses
journal homepage: www.elsevier.com/locate/mehy

Optimise the microbial flora with milk and yoghurt to prevent disease T

James A. Morris
Royal Lancaster Infirmary, Lancaster LA1 4RP, United Kingdom

A R T I C L E I N F O A B S T R A C T

Keywords: Pathogenic bacteria, which are temporary or permanent members of our microbial flora, cause or contribute to a
Milk wide range of human disease at all ages. Conditions include Alzheimer’s disease, atherosclerosis, diabetes
Yoghurt mellitus, obesity, cancer, autoimmunity and psychosis, amongst others. The mechanism of damage is in-
Atherosclerosis flammation which can be chronic or acute. An optimal microbial flora includes a wide range of pathogenic
Senile dementia
bacteria in low dose. This allows specific immunity to be developed and maintained with minimal inflammatory
Cancer
Autoimmunity
damage. Human milk has evolved to deliver an optimal microbial flora to the infant. Cow’s milk has the po-
Psychosis tential, following appropriate fortification, to maintain an optimal human microbial flora throughout life.
Diabetes mellitus Yoghurt is a fermented milk product in which bacteria normally present in milk convert sugars to lactic acid. The
acid suppresses the growth of pathogens in the oral cavity, oropharynx and oesophagus. Thus yoghurt can
restore an optimal flora in these regions in the short term. Since bacteria are transported between epithelial
surfaces, yoghurt will also optimise the flora elsewhere. The judicious use of milk and yogurt could prevent a
high proportion of human disease.

Introduction component would be commensals and there would only be a small dose
of pathogens. The pill would be precisely formulated and varied from
The hypothesis that low dose, early, mucosal exposure to patho- day to day or week to week so that infants would meet all the common
genic bacteria will reduce the frequency of microbial disease has been pathogens in the first year of life. The pill would then be continued
published previously [1]. The concept is based on the observation that throughout life and formulated to maintain an optimal commensal flora
the clinical severity of disease caused by bacteria and viruses is in- and a wide range of pathogens. The commensals would keep the pa-
creased if first exposure is delayed beyond childhood, and if the in- thogens in check and the presence of pathogens would maintain im-
fecting dose is high [2–4]. Furthermore the mucosal surfaces of the munity. In addition to the enteric coated pill we envisaged that nasal
enteric tract, in particular, are richly endowed with lymphatic tissue sprays of low doses of epidemic viruses might be required from time to
early in life and the information processing capacity to generate an time. Furthermore it might be necessary to use lotions and creams
effective immune response is optimal at this time. The hypothesis also containing commensal skin bacteria to establish and maintain an op-
included the prediction that in the 21st century we will re-discover the timal skin flora. This is all very involved but worthwhile if it were to
germ theory of disease. That germs cause most disease and genes act in prevent disease and prolong active life.
complex networks to prevent disease. The interaction between germs A point we failed to make in the original publication is as follows: if
and genes leading to, not only the range of infections described in low dose early mucosal exposure is an effective way of reducing disease
standard textbooks, but also atherosclerosis, Alzheimer’s disease, car- then surely a mechanism to achieve this goal would have evolved
cinoma, diabetes mellitus, depression, psychosis, autoimmunity and naturally. It has and the medium is milk. Mammalian milk, including
many more. In fact the full range of human disease except trauma. This human milk, contains bacteria [13–18]. These are not contaminants.
bold assertion was supported by evidence at the time of publication They are selected from other epithelial surfaces and carried through the
[4–10] and additional evidence has been gathered since publication blood to be actively secreted into milk. The composition of the bacterial
[11,12]. flora of human milk varies between individuals, by geography and
In order to prevent disease we envisaged the development of an through lactation. It is also early days in the analysis and the methods
enteric coated pill containing a mixture of commensal and pathogenic are still in development but it appears that the majority of bacteria are
bacteria [1]. The pill would be taken by mouth and the bacteria would commensals. They include the lactose fermenting bacteria which are
be released in the small intestine and would eventually populate the used to make natural yoghurt (lactobacilli, bifidobacteria and lactose
colon. The total dose of bacteria would not be high, but the major fermenting streptococci). But in addition to the commensals there are

E-mail address: Jim.A.Morris@mbht.nhs.uk.

https://doi.org/10.1016/j.mehy.2018.02.031
Received 20 January 2018; Accepted 25 February 2018
0306-9877/ © 2018 The Author. Published by Elsevier Ltd. This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/BY-NC-ND/4.0/).
J.A. Morris Medical Hypotheses 114 (2018) 13–17

low doses of pathogens. Thus it appears that milk and yoghurt have the health food, has been a disappointment. Yoghurt consumption has a
potential to achieve our aim of preventing disease by developing an minimal effect on the composition of the bacterial flora in the colon
optimal microbial flora. [22]. Furthermore, the idea, that absorption of toxic products from the
colon is a major cause of disease, is no longer accepted. The bacteria
The microbial flora used to produce yoghurt, however, are the basis of probiotic therapies
and these have been extensively investigated [22,23]. It is difficult to
There are of the order of 1015 bacterial cells on or within the surface summarise the results because the trials use different combinations of
of the body [19]. The majority resides in the colon, but there are bac- bacteria and varying doses in a wide range of conditions. In general
teria on every epithelial surface. The concept of on the surface is ob- there are small positive effects in most trials.
vious and it applies to all commensal bacteria. But there are some I believe it is time to re-evaluate the role of natural yoghurt [12]. It
bacteria which grow within the surface [12]. These include pathogens contains far fewer bacteria than the therapeutic probiotic preparations
such as Staphylocccus aureus, which can grow on the keratin surface of but it generates an acid environment which is essential for suppressing
the skin, but can also grow between the squamous epithelial cells of the the growth of pathogenic bacteria. This is certainly the situation in the
skin. S. aureus also grows within the skin adnexal glands (eccrine, se- vagina and probably will apply to the oral cavity, oropharynx and oe-
baceous and apocrine). Once again it can be on the surface or between sophagus which have a similar lining. Daily consumption of yoghurt is
the epithelial cells and therefore within the surface. Bacteria within the likely to change the flora around the teeth and in the tonsillar crypts in
surface are in direct continuity with the systemic circulation and can the short term. It will also determine the flora in the small intestine and
induce inflammation. This is one way in which pathogens can cause perhaps influence the resident bacteria at other sites by blood borne
chronic low grade damage over many years contributing to degen- transfer from the oral cavity. It won’t affect the colonic flora in the short
erative disease [12]. term but it could in the longer term.
The vagina is lined by non keratinizing stratified squamous epi-
thelium. The surface cells contain glycogen which is metabolized by Hypotheses and predictions
surface lactobacilli to lactic acid. The acid pH inhibits the growth of
pathogenic staphylococci and streptococci. Thus an optimal commensal Chronic inflammation is a risk factor for a range of diseases of
flora protects the vagina from infection. This is the simplest and best middle and later life, such as atherosclerosis [6], Alzheimer’s disease
characterized example of the interaction of commensal and pathogenic [5], type 2 diabetes mellitus [24], endogenous depression [25,26] and
bacteria. In the colon the flora is much more complicated with up to obesity [27]. Dental caries and chronic periodontitis are amongst the
800 different species [19]. But the principle of a stable ecological commonest inflammatory conditions and they are associated with the
system with commensal species dominating and inhibiting the growth aforementioned diseases [28]. Dental infections are caused by a wide
of pathogens still applies. The pathogens maintain immunity but only if range of pathogenic bacteria, including pathogenic streptococci such as
they are in direct contact with the systemic circulation and therefore Streptococcus mutans. Pathogenic staphylococci and streptococci also
growth within the surface might be more extensive than currently grow in the tonsillar crypts and within the squamous epithelium of the
known. Pathogens can also invade the blood stream. In most cases they oropharynx. The inflammatory response is designed to specifically de-
are rapidly cleared by neutrophils in the post capillary venules of the stroy pathogenic bacteria with as little damage to the host as possible.
lung or by phagocytes in the sinusoids of the spleen [20]. These epi- But the cytokine molecules released during inflammation are designed
sodes of transient bacteraemia are clinically silent. But if the bacteria to damage all biological material and therefore some damage to host
grow more quickly than they are removed, septicaemia occurs and tissues is inevitable [12]. Systemic release of cytokines will therefore
provokes clinically overt sepsis. damage endothelial cells, hence atherosclerosis, and perhaps directly
Bacteria enter the body through the oral cavity in food and drink. damage neurons, hence Alzheimer’s disease.
They also enter the upper respiratory tract in inhaled air, and these Staphylococcus aureus grows within the surface epithelium and is
bacteria are then carried into the oropharynx by nasociliary action. The therefore in direct contact with the immune system. Many strains of this
lining of the oral cavity, oropharynx and oesophagus is non keratinized organism secrete pyrogenic toxins which act as superantigens. They
squamous epithelium, as in the vagina. Bacteria can grow on and within directly stimulate T cells and lead to a non-targeted inflammatory re-
this epithelium. There are also deep crypts within the tonsils within sponse. This means maximal damage to the host with minimal damage
which bacteria can grow. Many bacteria are destroyed by stomach acid, to the bacteria [12]. We all have antibodies to these superantigens and
but the upper small intestine contains bacteria and they increase in therefore we all must be frequently exposed [29–31]. This makes S.
numbers as they transit to the colon. Bacteria can also alight on the aureus carriage a prime candidate for a pathogenic role in the above
external skin surface and extend into the skin adnexal glands. There is conditions. The secretion of pyrogenic toxins into the blood leads to the
also transit of bacteria through the blood from one epithelial lined formation of immune complexes with their specific anti-toxin IgG an-
surface to another. This certainly occurs in the case of breast milk. But tibody. These complexes are secreted in the urine [32,33] . This is an
the extent to which the ducts of the non lactating breast, the pancreas active process as the complexes are far too large to be passively filtered
and prostate are colonized by direct extension from the surface or from by the glomeruli. Thus measurement of urinary IgG and identification
the blood is unclear. of the toxins is theoretically possible.
The experimental approach envisaged is an observational study of
Probiotics and yoghurt patients in the early stages of the above conditions. The patients would
consume yoghurt daily for several months and the effects on the mi-
Metchnikoff, the Nobel laureate who discovered phagocytosis, first crobial flora of the oral cavity, inflammatory markers, urinary IgG and
popularized the consumption of yoghurt as a health food [21]. He the progression of the disease would be assessed. It is likely that yo-
studied the distribution of centenarians in Europe and noted there were ghurt will take time to have an effect on the flora, particularly around
more in Greece and the Balkans than in Northern Europe. Bulgaria in the teeth and in the tonsillar crypts. Furthermore success in the case of
particular was noted for a long lived healthy population of peasants Alzheimer’s disease and atherosclerosis would be slowing progression
whose diet included yoghurt. He postulated that natural fermentation of the condition rather then any marked improvement. The response in
of milk, producing an acid product, would suppress fermentation by endogenous depression might be more gratifying and perhaps should be
bacteria in the colon. The absorption of toxic products from the colon tried first.
would, therefore, be reduced and their harmful effects in causing dis- The winter months in the UK bring an increased number of viral
ease and aging would be ameliorated. But in many ways yoghurt, as a respiratory tract infections followed by an increase in the number of

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J.A. Morris Medical Hypotheses 114 (2018) 13–17

hospital admissions and an increase in the number of deaths in the remodeled. But what if the tiny bleeds that accompany the micro-
community. I have conducted many autopsy examinations on people fractures contain pathogenic bacteria from the oral cavity: bacteria that
who have died in these circumstances, but I have rarely attributed are adapted to grow and survive on the surface of dentine and to de-
death to viral infection. The hospital admissions and deaths are due to stroy periodontal ligaments. This could lead to local inflammation in
heart attacks, strokes, sepsis and pneumonia caused by secondary the bone and joint and impair repair and remodeling. Once again a trial
growth of pathogenic staphylococci and streptococci in the respiratory of yoghurt seems worthwhile.
tract and oropharynx. Regular consumption of yoghurt could have a Our ideas of the nature of cancer have changed in recent years
marked effect on winter deaths and greatly reduce the burden on the [41,42]. The conventional idea that malignant cells have acquired
health service. mutations in growth control genes leading to clinical cancer is correct.
The most likely explanation for the cause of autoimmune disease is But this is secondary to local destruction of the epithelial stem cell
that the auto-antibodies are provoked by molecular mimicry with hierarchy by chronic inflammation. Multiple stem cells then divide
bacteria of the normal body flora [4,34]. These conditions, character- without a quiescent phase and acquire mutations leading to multiple
istically, show a course of exacerbation and remission. Exacerbations malignant clones. Most of the clones die out but an occasional clone
are presumably associated with periods of re-exposure or increased survives to form a clinical cancer. The likely cause of cancer in the
carriage, and remissions with reduced carriage. Furthermore to main- breast, prostate and pancreas is therefore a pathogenic bacterial flora in
tain auto-antibodies over the long term the immune system must be in the ducts. Women who complete a pregnancy early in life and breast-
direct contact with the bacteria and the causative organisms are likely feed the infant will acquire a breast duct flora of lactose fermenting
to be pathogens growing within the surface rather than on it. The use of bacteria. These women have a reduced risk of breast cancer and
yoghurt to reduce pathogen carriage could therefore be successful in therefore the lactic acid forming bacterial flora is protective [43,44].
reducing exacerbations and prolonging remissions. Regular consumption of yoghurt could in theory have a similar effect
Rheumatoid arthritis is an immune complex mediated disease in but it will be difficult to test. The same might apply to the prostate and
which there is exciting new evidence that the immune complexes pancreas. At least it should be possible to ascertain if regular con-
contain staphylococcal antigens. These patients have a high frequency sumption of yoghurt will alter the bacterial flora in prostate secretions.
of staphylococcal toxins in the urine [35] and this implies that they are Mother’s milk has evolved to nourish the infant and to provide it
present in the blood as immune complexes with anti-toxin IgG. Redu- with an optimal bacterial flora. But milk will only have an optimal flora
cing staphylococcal carriage in these patients could prevent the disease. if the mother’s flora is optimal. Technological change influences our
Changes in social conditions can have profound effects on our flora flora and we cannot assume that mothers do have an optimal flora in
and lead to marked changes in the frequency of disease. In technolo- our society at present. Bacteria are carried from the epithelial surfaces
gically advanced societies good quality plumbing delivers hot and cold of the pregnant female to the breast and to the placenta. These bacteria
water to baths and showers. Daily washing with bactericidal soap then include pathogens from the oral cavity, particularly if dentition is poor.
washes off the surface bacteria and gives a competitive advantage to Could this be relevant to pre-eclamptic toxaemia; a common but enig-
bacteria, such as S. aureus, which are deeper in the skin. The result is an matic condition of unknown cause? There is clearly a case to monitor
epidemic of eczema, asthma, hay fever, and type 1 diabetes mellitus – the bacterial flora in pregnancy and consider the role of yoghurt in
the so called diseases of the “hygiene hypothesis” [36–38]. Probiotics modifying the flora.
can prevent eczema [39,40], probably by suppressing the growth of S. I can construct similar hypotheses for a broad range of other con-
aureus. I suspect that yoghurt will be as successful. Yoghurt might also ditions including acne, Crohn’s disease and gastro-intestinal reflux
prevent asthma and type 1 diabetes mellitus. S. aureus has a growth disease (GORD). Will yoghurt consumption decrease the carriage of
advantage when blood glucose rises. There will therefore be an evolu- Propionibacterium acnes in the oral cavity and skin? Will modification of
tionary advantage to any organism that could damage the beta cells of the oesophageal flora reduce the degree of inflammation associated
the Islets of Langerhans in the pancreas or directly interfere with insulin with GORD, improving symptoms and reducing the risk of carcinoma?
action. Since bacteria evolve rapidly it is highly likely that such a me- Modification of the oesophageal flora will change the flora in the small
chanism exists. Thus the hypothesis is that S. aureus causes type 1 intestine and therefore could decrease the risk of Crohn’s disease. In fact
diabetes mellitus by provoking the production of auto-antibodies that whenever we are faced with a common inflammatory disease of un-
damage beta cells. In a similar way S. aureus might cause type 2 dia- known cause we should consider the possibility of a bacterial cause and
betes mellitus by secreting toxins that interfere with insulin and or investigate by searching for bacterial antigens in the urine [11]. A trial
damage beta cells. Suppressing S. aureus carriage might, therefore be of yoghurt is then worthwhile because to date there are no recorded
successful in preventing both types 1 and 2 diabetes mellitus [11]. downsides.
The epidemic of obesity is also a cause of considerable concern. I
doubt that it is due to moral failings or the sins of gluttony and sloth, as Discussion
implied in many articles in the general press. Instead I would con-
centrate on the systems that regulate appetite and match intake of I have used the term “microbial flora’ rather than the more modern
calories to their expenditure. Modern farming techniques are designed term “microbiota” throughout this article. This is because the concept
to increase weight gain in animals, and the selective approach will also of the microbiota is often linked to the idea that the gut bacteria work
select for bacteria that promote weight gain. The latter mechanism together as a complex organism interacting positively with the colon
would involve producing molecules or provoking the formation of auto- and the immune system to preserve health. There is much to commend
antibodies that directly or indirectly stimulate appetite. The bacterial this idea, but in this article I have emphasized the role of competition in
flora of animals will spread to humans and we could be experiencing a keeping pathogens in check. This is an ecological concept and therefore
hidden change in the composition of our flora. Once again the bacteria the term “microbial flora” is more appropriate. It is also somewhat
that secrete molecules into the body and provoke auto-antibodies are simplistic to talk of commensals and pathogens as distinct, because all
likely to be those in direct contact with the systemic circulation. The bacteria are potentially pathogenic and there is in fact a spectrum of
short cut to identifying the causative bacteria is to measure IgG in the behaviour. But if we are to make progress in the short term towards
urine and if it is present to try to identify the antigen of the IgG immune preventing disease it is essential that we focus on suppressing the
complex [11]. Auto-antibodies to regulatory peptides, provoked by our growth of known pathogens, such as S. aureus, and augmenting the
bacterial flora, are in fact common [34]. growth of known commensals, such as the lactic acid producing bac-
Normal wear and tear to our bones and joints will cause micro- teria.
fractures in bone and cartilage which are quickly repaired and Many readers will be skeptical of the claim that milk and yoghurt

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J.A. Morris Medical Hypotheses 114 (2018) 13–17

could have such potential to prevent disease. They are certainly not Conflict of interest
new products and their health benefits have been investigated [45–49].
Epidemiological studies of milk and yoghurt consumption are, however, None.
fraught with difficulties. It is not possible to get an accurate assessment
of the amount consumed over long periods, and the commercial pro- References
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