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KARI, Acta Chem. Scand., OSTEOX, Biochim. Biophys. Acta, Schryver, MUKHERJEE, Proc. Roy. Soc. (London)
KARI, Acta Chem. Scand., OSTEOX, Biochim. Biophys. Acta, Schryver, MUKHERJEE, Proc. Roy. Soc. (London)
2 9 (1958)
Rt~SUMt~
SUMMARY
BIBLIOGRAPHIE
P R O P E R T I E S O F R I B O N U C L E I C ACID T U R N O V E R IN T 2 - I N F E C T E D
ESCHERICHIA COLI
L. A S T R A C H A N AND E. V O L K I N
Biology Division, Oak Ridge National Laboratory,* Oak Ridge, Tennessee (U.S.A.)
Conditions ot infection
O v e r n i g h t - g r o w n cells of E. coli B were diluted to a titer of 2- 4" IO7 cells/ml and t h e n in-
c u b a t e d w i t h aeration at 37 ° until a titer of 3 - 5 ' lO8 cells/ml was obtained. I n m o s t experiments,
these log-phase cells were t h e n directly infected in the g r o w t h m e d i u m w i t h a IO- to IS-fold
multiplicity (phage/bacteria) of T 2 r + bacteriophage 7 (zero time). I n one e x p e r i m e n t (Fig. 2),
the bacteria were centrifuged, w a s h e d with cold adsorption m e d i u m , resuspended in adsorption
m e d i u m at 37 ° and were t h e n infected. After 5 m i n of aeration at 37 ° the bacteria were p u t into
p e p t o n e b r o t h g r o w t h m e d i u m (zero time). The phage-infected bacteria were always aerated and
incubated at 37 ° . Assays for free phage, total plaque formers, uninfected and infected bacteria,
performed as described b y AI)AMSs, indicated t h a t in all e x p e r i m e n t s at the time of isotope ad-
dition, the n u m b e r of uninfected bacteria was Io -8 to lO 4 of the n u m b e r of infected bacteria.
Experimental procedure
38p, obtained f r o m the Oak Ridge National L a b o r a t o r y in the form of inorganic p h o s p h a t e ,
was neutralized and added to the culture of phage-infected bacteria at various times after in-
fection. 4 to I o min after 38p addition, t h e p h o s p h o r u s specific activity was reduced by increasing
the 31p o r t h o p h o s p h a t e concentration Ioo- to 3oo-fold. I n one e x p e r i m e n t (Fig. 5), after 4 min
for isotope incorporation, 2 1 of the infected cells were quickly chilled by the rapid addition of I 1
of crushed ice containing o.i mole of NaC1 and o.oi mole of sodium p h o s p h a t e at p H 7.5. After
centrifugation at 15oo x g in the cold, the cells were washed w i t h I5OO ml of s a l i n e - p h o s p h a t e
(above concentration), recentrifuged, and suspended in 200 ml of cold s a l i n e - p h o s p h a t e . 2 1 of
d e p h o s p h o r y l a t e d broth, made o.oi M w i t h respect to o r t h o p h o s p h a t e , were w a r m e d to 37 ° and
t h e n mixed with the cold suspension of infected bacteria. Aeration and incubation at 37 ° were
resumed.
Relerences p. 544.
538 L. ASTRACHAN, E. VOLKIN VOL. 29 (1958)
Chemical techniques
P o r t i o n s of t h e labeled, i n f e c t e d b a c t e r i a l c u l t u r e w e re chilled in a n ice b a t h a n d simul-
t a n e o u s l y acidified w i t h c o n c e n t r a t e d p e r c h l o r i c acid to a final c o n c e n t r a t i o n of 0. 5 N acid.
Nucleic acids a n d o t h e r c h e m i c a l f r a c t i o n s w e r e o b t a i n e d b y a p p l y i n g t h e m e t h o d of TYNER et al. 9
w i t h s o m e m i n o r m o d i f i c a t i o n s2. The i o n - e x c h a n g e s e p a r a t i o n of t h e a l k a l i - p r o d u c e d R N A mono-
n u c l e o t i d e s from each o t h e r a n d from D N A has been d e s c r i b e d 2. A t t i m e s , t h e i o n - e x c h a n g e
p r o c e d u r e w a s modified so t h a t t h e R N A m o n o n u c l e o t i d e s w e re n o t i n i t i a l l y s e p a r a t e d from each
o t h e r b u t were collected t o g e t h e r b y e l u t i n g w i t h 60o m l of o.oi N HC1. T o t a l R N A so o b t a i n e d
w a s i m m e d i a t e l y n e u t r a l i z e d w i t h a s l i g h t excess of N H a O H and, in a d d i t i o n to o t h e r a na l ys e s , w a s
a s s a y e d for t h e p r e s e n c e of a n y r a d i o a c t i v i t y a s s o c i a t e d w i t h i n o r g a n i c p h o s p h a t e TM. I n o r g a n i c
a n d t o t a l p h o s p h o r u s w e r e d e t e r m i n e d b y t h e m e t h o d of GRISWOLD et al. n . U l t r a v i o l e t l i g h t ab-
s o r p t i o n w a s m e a s u r e d in a B e c k m a n DU s p e c t r o p h o t o m e t e r , a n d r a d i o a c t i v i t y m e a s u r e m e n t s
were p e r f o r m e d as p r e v i o u s l y d e s c r i b e d 2.
RESULTS
~2 4
A .11 ( B
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i
(3 20 3b 40 50 ~o 6o 0
12 ~2 p3,
TIME(re,n)
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t
12 p3, TIME {mml
EXCESS EXCESS EXCESS
4 12
/
H
io~ ~o~
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9~
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I
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£
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o ,o so ,;b sb 60 ~ 6o ~0 " " 4b so 6o
! I I TIME{m,~) 'b ~ TTIME(m,n) 5b
T2 p3Z p31 p
EXCESS EXCESS EXCESS
Fig. I. Turnover of RNA-32P and accumulation of DNA-S2P as a function of time after infection
of isotope addition (dephosphorylated broth). To parallel samples of infected cells, a2P-labeled
orthophosphate was added at designated times after infection. Five minutes after ~2p was added,
its specific radioactivity was reduced by adding sufficient pH 7.5 phosphate buffer (alp) to increase
the orthophosphate concentration from 1.4 to 1.8 #g of P/ml to 200 to 250 #g of P/ml. To correct
for variations in cell numbers, the values for 32p in RNA and DNA were adjusted to what would
be found in a sample containing iooo optical density units of RNA (26o m#). The scale for RNA
is magnified threefold relative to the DNA scale.
TABLE I
DISTRIBUTION OF s S p AMONG R N A MONONUCLEOTIDES
U n i n f e c t e d cells
3 -- 24 24 23 3°
3° 25 23 24 21 32
I n f e c t e d cells:S~P i m i n a f f e r i n f e c t i o n
3 -- 17 31 31 20
I7~ 12]/2 2I 24 27 27
3o 25 23 25 26 27
I n f e c t e d cells:S2P 2 6 m i n a f f e r i n f e c t i o n
5 -- 18 29 29 24
3° 25 2I 28 29 23
>-
t-
o
O
9IK iI
-1 3-
o -
t
II
/
//
o
/
.0
/ Fig. 2. U p t a k e of s~p i n t o R N A of cells p r e v i o u s l y i n f e c t e d
I ,/
in a d s o r p t i o n m e d i u m . A t d e s i g n a t e d t i m e s a f t e r a d d i t i o n
o 3 ,6 ,5 2b
f TIME(mm)~ a t zero t i m e of p e p t o n e b r o t h t o cells p r e v i o u s l y infected
in n o n - n u t r i e n t a d s o r p t i o n m e d i u m , s s p - l a b e l e d i n o r g a n i c
p32 p32 p32 p h o s p h a t e w a s a dde d. The v a l u e s w e re a d j u s t e d as in Fig. I.
Re/erences p. 544.
voL. 29 (1958) RIBONUCLEIC
ACID TURNOVER IN E. coli 541
Experiments similar to those described in Fig. I were performed with cells grown
and infected in synthetic medium rather than dephosphorylated broth. The results
(Fig. 3) are essentially similar, in that the amounts of 3~p incorporated into RNA and
the subsequent rates of turnover are greater at earlier times of isotope addition. In
addition, the isotope distribution among the RNA mononucleotides and the change
in distribution with time is similar to those found in dephosphorylated broth. In-
creased incorporation of 32p into DNA at later times of isotope addition is again con-
comitant with decreased incorporation into RNA so that when isotope is added I i or
more minutes after infection, more s~p enters DNA than RNA shortly after isotope
addition.
~3
A
36
32
28 =
]-- ~
/I ° 36 -
~o
I TIME (m~)
,r p ~ p ~ T2 p ~ Ep)~..SS T2 p32 [XC~$S
z EXCESS
acid-soluble material. Infected cells were therefore allowed to incorporate 32p, washed
to reduce the pool of acid-soluble radioactivity, and then further incubated in nutrient
medium to follow the changes in asp content of the various chemical fractions. Upon
incubation, there were practically no changes in a2p content of the acid-soluble
material, lipids, and proteins, but large amounts of isotope left R N A and entered
DNA. From Fig. 5, which shows the changes in isotope content of R N A and D N A
after the cells were washed, it can be seen that the loss of 3~p from R N A is almost
equal to the uptake by DNA. In this experiment, no other chemical fraction could
have participated in the over-all balance of isotope since all but the acid-soluble
material contained too little radioactivity to be of significance; and whereas the acid-
soluble radioactivity was slightly higher than the radioactivity in the nucleic acids,
its changes with time were negligible in comparison to the changes of R N A and DNA.
Apparently then, the phosphorus of R N A can be incorporated into DNA, though the
pathway remains obscure".
~'3 t
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-/\
., o 9
0: T -,o g>-
F_ ->7-
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v- 2-
Ip > ~-
C-
=
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Q J
J
4o S .
I ~l.~ BROTH I--
o
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u_
T I M E OF INCUBATION A F T E R WASH ( m i n i
DISCUSSION
The data presented (Fig. 5) demonstrate that phosphorus released from RNA can be
incorporated into DNA. Two deductions may be made from this finding; namely, that
* I t is conceivable t h a t 3~p entering D N A came exclusively f r o m acid-soluble ~2p, with the
p h o s p h o r u s liberated from R N A serving as replacement for acid-soluble s~P. This is unlikely since
in several similar experiments, where cells were washed differently to leave greatly varying
a m o u n t s of acid-soluble radioactivity, the a m o u n t of ~2p entering D N A was always close to the
a m o u n t liberated f r o m R N A and showed no relation to the level of acid-soluble radioactivity.
Re/erences p. 544.
VOL. 2 9 (1958) RIBONUCLEIC ACID TURNOVER IN E. coli 543
the breakdown of RNA does not proceed any further than the level of nucleotides and
that ribonucleotides (or polymerized ribonucleotides) can be converted to deoxyribo-
nucleotides (or polymerized deoxyribonucleotides). If radioactive RNA were broken
down to nucleosides, then the RNA 32p would not be so nearly quantitatively in-
corporated into DNA in the presence of excess unlabeled orthophosphate.The transfer
of labeled phosphorus apart from the rest of the ribonucleotides seems unlikely since
the phosphorus involved could only be in the form of phosphate stably bound to ribose.
Preliminary results with 14C-labeled RNA also indicate the intact transfer of ribo-
nucleotide material to deoxyribonucleotides.
The question m a y then be considered whether RNA is a mandatory precursor to
DNA. From the studies of RNA turnover at different times after infection, a direct
precursor role for RNA is questionable, for, if RNA had such a role, its rate of synthesis
and turnover might be expected to increase with greater rates of net DNA synthesis,
whereas, in fact, the reverse was observed. A description of metabolic events consistent
with the data would be that RNA turnover results in the formation of acid-soluble
nucleotides incorporated into DNA, but most of the DNA may be synthesized over
pathways that do not necessarily pass through RNA.
Consideration of the metabolic events that could lead to the observed changes in
RNA turnover is pertinent. One possibility is that the rate of RNA turnover remains
constant after infection but that the RNA precursor pool becomes larger. If this were
so, then the specific activity of precursor material would fall, resulting in fewer counts
entering RNA. However, material that could reasonably be a precursor to RNA (i.e.,
the acid-soluble nucleotides) does not increase in amount for the first 30 rain after
infection and, in addition, it shortly attains the same high specific activity whether
isotope is added i or 26 min after infection (unpublished experiments). An alternate
possibility, which corresponds more closely to the data, is that very shortly after
infection a limited amount of a new kind of RNA is synthesized, and the turnover
rate of this RNA decreases with time after infection. Under these circumstances, if
isotope were added shortly after infection, most of the RNA then being synthesized
would come from labeled precursors, whereas if isotope were added at a later time,
this new RNA would have been synthesized from unlabeled precursors. This RNA
synthesized shortly after infection is considered to differ from normal bacterial RNA
because of the heterogeneous specific activities associated with the mononucleotides.
I t must be noted that the metabolism of RNA b y infected bacteria is not necessarily
fully described by considering only this new RNA synthesized shortly after infection.
In previous work where RNA was isolated from subcellular fractions ~2, it was indi-
cated that there might be two or more metabolically active species of R N A - - o n e ,
similar to that discussed here, that exhibits rapid turnover, and another that slowly
incorporates and retains isotope. This second species might account in part for the
retention of considerable isotope by RNA after isotope dilution.
In considering what role an RNA having a high turnover rate shortly after
infection might have, we recall that the work of BURTONla and TOMIZAWA AND
SUNAKAWA14 indicates that some protein synthesis must precede phage-DNA syn-
thesis and that this protein synthesis normally occurs shortly after infection. The new
RNA m a y be directly related to the synthesis of the new protein. But since incorpora-
tion of 32p into lipids and proteins is also greatest shortly after infection, the activity
Re]erences p. 544.
544 L. ASTRACHAN, E. VOLKIN VOL. 29 (1958)
of R N A at t h a t t i m e m a y n o t be d i r e c t l y r e l a t e d to synthesis of a new p r o t e i n b u t
m a y reflect a general reorganisation of cellular material.
SUMMARY
REFERENCES