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DNA Profiling
DNA Profiling
Background
Starting in the 1980s scientific advances
allowed for the use of DNA as a
mechanism for the identification of an
individual. The first patent covering the
modern process of DNA profiling was filed
by Dr. Jeffrey Glassberg[5] in 1983, based
upon work he had done while at
Rockefeller University in 1981. Glassberg,
along with two medical doctors, founded
Lifecodes Corporation[6][7] to bring this
invention to market. The Glassberg patent
was issued in Belgium BE899027A1 ,[8]
Canada FR2541774A1 ,[9] Germany
DE3407196 A1,[10] Great Britain
GB8405107D0 ,[11] Japan
JPS59199000A,[12] United States as
US5593832A .[13][14] In the United
Kingdom, Geneticist Sir Alec
Jeffreys[15][16][17][18] independently
developed a DNA profiling process in
beginning in late 1984[19] while working in
the Department of Genetics at the
University of Leicester.[20]
DNA Extraction
RFLP analysis
STR analysis
The system of DNA profiling used today is
based on Polymerase chain reaction (PCR)
and uses simple sequences[25] or short
tandem repeats (STR). This method uses
highly polymorphic regions that have short
repeated sequences of DNA (the most
common is 4 bases repeated, but there are
other lengths in use, including 3 and 5
bases). Because unrelated people almost
certainly have different numbers of repeat
units, STRs can be used to discriminate
between unrelated individuals. These STR
loci (locations on a chromosome) are
targeted with sequence-specific primers
and amplified using PCR. The DNA
fragments that result are then separated
and detected using electrophoresis. There
are two common methods of separation
and detection, capillary electrophoresis
(CE) and gel electrophoresis.
AmpFLP
Another technique, AmpFLP, or amplified
fragment length polymorphism was also
put into practice during the early 1990s.
This technique was also faster than RFLP
analysis and used PCR to amplify DNA
samples. It relied on variable number
tandem repeat (VNTR) polymorphisms to
distinguish various alleles, which were
separated on a polyacrylamide gel using
an allelic ladder (as opposed to a
molecular weight ladder). Bands could be
visualized by silver staining the gel. One
popular focus for fingerprinting was the
D1S80 locus. As with all PCR based
methods, highly degraded DNA or very
small amounts of DNA may cause allelic
dropout (causing a mistake in thinking a
heterozygote is a homozygote) or other
stochastic effects. In addition, because
the analysis is done on a gel, very high
number repeats may bunch together at the
top of the gel, making it difficult to resolve.
AmpFLP analysis can be highly
automated, and allows for easy creation of
phylogenetic trees based on comparing
individual samples of DNA. Due to its
relatively low cost and ease of set-up and
operation, AmpFLP remains popular in
lower income countries.
D13S317 7, 8 7, 9 8, 9
Y-chromosome analysis
Mitochondrial analysis
Degraded DNA
In the real world DNA labs often have to
deal with DNA samples that are less than
ideal. DNA samples taken from crime
scenes are often degraded, which means
that the DNA has started to break down
into smaller fragments DNA
fragmentation. Victims of homicides might
not be discovered right away, and in the
case of a mass casualty event it could be
hard to get DNA samples before the DNA
has been exposed to degradation
elements.
DNA Mixtures
DNA databases
An early application of a DNA database
was the compilation of a Mitochondrial
DNA Concordance,[38] prepared by Kevin
W. P. Miller and John L. Dawson at the
University of Cambridge from 1996 to
1998[39] from data collected as part of
Miller's PhD thesis. There are now several
DNA databases in existence around the
world. Some are private, but most of the
largest databases are government-
controlled. The United States maintains
the largest DNA database, with the
Combined DNA Index System (CODIS)
holding over 13 million records as of May
2018.[40] The United Kingdom maintains
the National DNA Database (NDNAD),
which is of similar size, despite the UK's
smaller population. The size of this
database, and its rate of growth, are giving
concern to civil liberties groups in the UK,
where police have wide-ranging powers to
take samples and retain them even in the
event of acquittal.[41] The Conservative–
Liberal Democrat coalition partially
addressed these concerns with part 1 of
the Protection of Freedoms Act 2012,
under which DNA samples must be
deleted if suspects are acquitted or not
charged, except in relation to certain
(mostly serious and/or sexual) offenses.
Public discourse around the introduction
of advanced forensic techniques (such as
genetic genealogy using public genealogy
databases and DNA phenotyping
approaches) has been limited, disjointed,
unfocused, and raises issues of privacy
and consent that may warrant the
establishment of additional legal
protections.[42]
Considerations when
evaluating DNA evidence
As DNA profiling became a key piece of
evidence in the court, defense lawyers
based their arguments on statistical
reasoning. For example: Given a match
that had a 1 in 5 million probability of
occurring by chance, the lawyer would
argue that this meant that in a country of
say 60 million people there were 12 people
who would also match the profile. This
was then translated to a 1 in 12 chance of
the suspect's being the guilty one. This
argument is not sound unless the suspect
was drawn at random from the population
of the country. In fact, a jury should
consider how likely it is that an individual
matching the genetic profile would also
have been a suspect in the case for other
reasons. Also, different DNA analysis
processes can reduce the amount of DNA
recovery if the procedures are not properly
done. Therefore, the number of times a
piece of evidence is sampled can diminish
the DNA collection efficiency. Another
spurious statistical argument is based on
the false assumption that a 1 in 5 million
probability of a match automatically
translates into a 1 in 5 million probability
of innocence and is known as the
prosecutor's fallacy.
Evidence of genetic
relationship
Cases:
Baron Moynihan
Pringle baronets
See also
DNA barcoding
DNA database
National DNA database
DNA paternity testing
Capillary electrophoresis (CE)
Forensic identification
Full genome sequencing
Gene mapping
Genealogical DNA test
Harvey v. Horan
Identification (biology)
Kinship analysis
Maryland v. King
Phantom of Heilbronn
Project Innocence
Restriction fragment length
polymorphism (RFLP)
Ribotyping
Short tandem repeat (STR)
International Society for Forensic
Genetics
International Society of Genetic
Genealogy
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Further reading
Kaye, David H. (2010). The Double Helix
and the Law of Evidence . Cambridge,
Mass.: Harvard University Press.
ISBN 9780674035881.
OCLC 318876881 .
Koerner, Brendan I. (October 2015).
"Family Ties: Your Relatives' DNA Could
Turn You Into a Suspect". Argument.
Wired (paper)|format= requires |url=
(help): 35–8. ISSN 1059-1028 .
External links
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DNA profiling.
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