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Normal Brain

Anatomy on Magnetic
R e s o n a n c e Im a g i n g
Bryan Pukenas, MD

KEYWORDS
 Brain anatomy  Magnetic resonance imaging  Sagittal
 Axial

Brain magnetic resonance (MR) imaging studies T2-weighted images are sensitive to increased
provide multiple different imaging sequences in at water content within tissues and to differences in
least 2, and often 3, imaging planes. The different susceptibility between tissues. Gradient echo
tissue signal characteristics and anatomic view- images are susceptible to inhomogeneities in the
points are often complementary, and interpreting magnetic field, accentuating blood products, iron,
an MR imaging study of the brain can be a daunting calcium, and manganese within tissues. This
task. The variety of pulse sequences and imaging sequence is routinely performed during evaluation
planes makes understanding normal anatomy for stroke and trauma because hemorrhage is well
a necessity. Admittedly, many different approaches seen. Fluid-attenuated inversion recovery (FLAIR)
can be taken when interpreting images, but in this sequence can be used to obtain T2-weighted
article just one approach to understanding normal contrast while voiding the signal from cerebrospinal
anatomy is described. The normal anatomy of the fluid, allowing a pathologic process to be identified
brain has filled many textbooks, and a sincere effort with more confidence. Diffusion-weighted (DW)
has been made to provide a pertinent and concise imaging assesses for the ability of water to diffuse
reference suitable for review. Textbooks cited in the local cell environment, which is particularly
within the article serve as excellent references for important in stroke and tumor imaging because
those who wish to further their knowledge of brain areas of restricted diffusion demonstrate increased
anatomy. signal intensity. It is paramount to compare the DW
images with the source apparent diffusion co-
PROTOCOL efficient (ADC) images. Areas of restricted diffusion
appear dark on the ADC maps, whereas areas of
The overwhelming advantage of MR imaging is its facilitated diffusion appear bright.1 Susceptibility-
ability to provide images with increased signal to weighted images highlight differences in inher-
noise ratios. Tissue characteristics with respect to ent tissue magnetic susceptibility and can be
different imaging sequences provide valuable clues used for evaluation of deoxyhemoglobin in veins,
when interpreting an MR image of the brain. There- hemorrhage, iron-containing tissues, and calcium
fore, it is important to understand the accentuated deposition.2
tissue features on each scan. T1-weighted images
provide good tissue discrimination and, in conjunc- IDENTIFYING THE LOBES OF THE BRAIN
tion with the postcontrast scans, allow assessment
for tissue enhancement. Precontrast and postcon- The frontal lobes are located anteriorly and extend
trast scans must be obtained with identical imaging posteriorly to the central (rolandic) sulcus, which
parameters to truly assess contrast enhancement partitions the frontal and parietal lobes. Several
(Table 1). T1-weighted and T2-weighted images techniques can be used to identify the central
are complementary to each other because the sulcus, a universal point of reference. On the axial
mri.theclinics.com

The author has nothing to disclose.


Division of Neuroradiology, Department of Radiology, Hospital of the University of Pennsylvania, 3400 Spruce
Street, Philadelphia, PA 19104, USA
E-mail address: Bryan.Pukenas@uphs.upenn.edu

Magn Reson Imaging Clin N Am 19 (2011) 429–437


doi:10.1016/j.mric.2011.05.015
1064-9689/11/$ – see front matter Ó 2011 Elsevier Inc. All rights reserved.
430 Pukenas

Table 1
Hospital of the University of Pennsylvania imaging parameters

Repetition Echo Inversion Flip Angle


Scan Time (ms) Time (ms) Time (ms) (degrees)
1.5-T Brain MR Imaging
Sagittal T1 spin echo 450 10 NA 90
Axial T2 turbo spin echo 5490 73 NA 150
Axial gradient echo 800 26 NA 20
Axial FLAIR 8900 141 2500 180
Axial diffusion echo planar spin echo 4000 83 NA NA
Axial T1 precontrast spin echo 500 17 NA 90
Axial T1 postcontrast spin echo 500 17 NA 90
Coronal T1 postcontrast spin echo 500 17 NA 90
3.0-T Brain MR Imaging
Sagittal T1 FLAIR 2100 9 896.2 150
Axial FLAIR 9000 119 2500 150
Axial T1 precontrast spin echo 700 12 NA 90
Axial T2 gradient echo 700 19.9 NA 20
Axial T2 susceptibility weighted 27 20 NA 15
Axial T2 turbo spin echo 5440 96 NA 150
Axial diffusion echo planar spin echo 6400 109 NA NA
Axial T1 postcontrast spin echo 700 12 NA 90
Coronal T1 postcontrast spin echo 700 8.9 NA 90

Abbreviations: FLAIR, fluid-attenuated inversion recovery; NA, not available; TE, echo time; TI, inversion time; TR, repe-
tition time.

T2-weighted images near the vertex, the central the parietal and occipital lobes. However, toward
sulci can be seen as a pair of mirror image trans- the midline, the parietooccipital sulcus is well
verse grooves (Fig. 1), with the motor cortex seen (Fig. 6), demarcating their boundary.8
always located anterior to this sulcus.3 The supe-
rior frontal sulcus is a horizontally oriented sulcus
Superficial Surface Anatomy
that terminates in the obliquely oriented precentral
sulcus,4 and one can find the central sulcus as the Although there are variations of normal anatomy,
sulcus posterior to the precentral sulcus. The pre- the superficial surface of the brain follows a general
central knob, the cortical location for hand func- pattern, identified best on sagittal images. Nai-
tion, is identified sitting just anterior to the central daich and colleagues6 provide a thorough descrip-
sulcus (Fig. 2).5 The inferior central sulcus does tion of the superficial frontal and temporal lobes.
not intersect the sylvian (lateral) fissure, rather it The frontal lobe contains 3 horizontal gyri and
is contained by the junction of the precentral and the obliquely oriented precentral gyrus. The supe-
postcentral gyri.6 On midline sagittal MR images, rior frontal gyrus runs horizontally, parallel to the
the central sulcus is somewhat more difficult to falx and interhemispheric fissure. The middle
identify, but it is located anterior to the marginal frontal gyrus is the largest of the horizontal gyri,
ramus of the cingulate sulcus (Fig. 3).7 running parallel to the superior frontal gyrus and
Inferiorly, the frontal lobe is separated from the undulating posteriorly, where it fuses with the pre-
temporal lobe by the sylvian fissure, which is easily central gyrus. The superior frontal sulcus divides
seen on both axial and sagittal images (Fig. 4). The the superior frontal gyrus and middle frontal gyrus,
middle cerebral arteries are located within the and the inferior frontal sulcus divides the middle
sylvian fissure and are seen as flow voids on frontal gyrus and inferior frontal gyrus. The inferior
T2-weighted images (Fig. 5). The parietal lobes frontal gyrus is triangular and is separated from
are bound anteriorly by the central sulcus. Super- the frontal pole by the frontomarginal sulcus. The
ficially, there is no anatomic landmark separating superior border of the inferior frontal gyrus is
Normal Brain MRI 431

Fig. 3. Sagittal T1-weighted (repetition time, 442 ms;


echo time, 9.3 ms) image in a paramidline location
demonstrating the marginal sulcus (white arrow),
cingulate sulcus (CS), callosal sulcus (cal sul), and
Fig. 1. Axial T2-weighted (repetition time, 3000 ms; cingulate gyrus (CING). The straight sinus flow void
echo time, 100 ms) image near the vertex demon- is also present (StS). Note also the tentorium cerebelli
strates 2 mirror image horizontal sulci (long black (black arrow), fornix (f), and optic tract (OT).
arrows) demarcating the central sulcus. The precentral
sulcus is thicker than the postcentral sulcus, a normal horizontal, whereas the inferior surface is trian-
finding. Note the falx (short black arrow) and flow gular and divided into 3 parts: the pars orbitalis,
void within the superior sagittal sinus (SSS). pars triangularis, and pars opercularis.
The superficial temporal lobe contains 3 superfi-
cial gyri: the superior temporal gyrus, middle
temporal gyrus, and inferior temporal gyrus. The

Fig. 4. Sagittal T1-weighted (repetition time, 442 ms;


echo time, 9.3 ms) far-lateral image demonstrating
Fig. 2. Axial T2-weighted (repetition time, 3000 ms; the sylvian fissure (SF) as well as the superior temporal
echo time, 100 ms) image more inferior to Fig. 1, (STG) and middle temporal gyri (MTG). The anterior
demonstrating the omega-shaped precentral knob (Ant) and posterior (Post) lobes of the cerebellum
(arrows). are separated by the primary fissure (white arrow).
432 Pukenas

Fig. 6. Sagittal T1-weighted (repetition time, 442 ms;


echo time, 9.3 ms) midline image. The rostrum (R),
genu (G), body (B), and splenium (S) of the corpus cal-
losum are well seen with the third ventricle (3rd Vent)
inferior to the body. The fornix (F) is seen arching pos-
teriorly toward the splenium. Inferior to the fornix,
the thalamus (Th) is seen just lateral to the third
ventricle. The fornix originates in the subiculum and
Fig. 5. Axial T2-weighted image (repetition time, terminates in the mammillary bodies (mb). The pitui-
3000 ms; echo time, 100 ms) at the level of the tary gland (P) is located in the sella (s). Superior to
midbrain demonstrates flow voids of the middle cere- the sella is the optic chiasm (c). The superior colliculus
bral arteries (vertical white arrows) within the sylvian (sc), along with the inferior colliculus (ic), form the
fissures. The optic nerve (ON), optic chiasm (CHIASM), quadrigeminal plate in the tectum of the midbrain
and optic tract (OT) are well seen at this level. The in- (MB), posterior to the cerebral aqueduct. A flow
terpeduncular cistern (IPC) is bounded by the crus cer- void within the basilar artery (basilar a.) is present
ebri (CR). The basal veins of Rosenthal (white arrow, anterior to the belly of the pons (pons). The triangular
BVR) travel around the brain stem in the ambient fourth ventricle (4) is seen anterior to the cerebellum
cistern. Note also the hippocampus (HIP), mammillary (CB). The cerebellar tonsils (T) are present in the
bodies (white arrow, MB), uncus (UNCUS), and amyg- foramen magnum (FM). The subcallosal area (subC)
dala (AMY). More posteriorly, the cerebral aqueduct of the cingulate gyrus (CG) continues around the
(black circle) and inferior colliculi (ic) can be seen. corpus callosum where it becomes the isthmus of
the corpus callosum inferior to the splenium and
continues as the parahippocampal gyrus (not shown).
Demarcating the parietal and occipital lobes, the pari-
superior temporal sulcus separates the superior etooccipital sulcus (black arrow) sits posterior to the
and middle temporal gyri and courses parallel precuneus (P). The calcarine sulcus (white arrow)
with the superior fontal gyrus until posteriorly, divides the medial occipital lobe into the cuneus and
where it angles superiorly and is called the angular lingual gyrus. Notice the bright signal within the cli-
sulcus. The inferior temporal sulcus separates the vus (CL) and C2, indicating fatty marrow.
middle temporal and inferior temporal gyri.6
The postcentral gyrus demarcates the anterior
structures are better seen on the midline sagittal
border of the parietal lobe and is parallel to the
views, discussed next.
precentral sulcus. The intraparietal sulcus divides
the parietal lobe into superior and inferior lobes.
Midline Structures
The inferior lobe is divided into the supramarginal
gyrus and the appropriately named angular gyrus, The easiest structure to identify on the midline
which envelopes the angular sulcus and repre- sagittal image is the corpus callosum, consisting
sents the posterior aspect of the inferior parietal of the rostrum, genu, body, and splenium (see
lobe. The inferior parietal lobe can show marked Fig. 6). The cingulate gyrus parallels the corpus cal-
left to right asymmetry.6 losum anteriorly until its marginal branch courses to
The occipital pole can be seen along the poste- the superior brain surface. The sulcus anterior to
rior superficial surface, but most occipital lobe the marginal sulcus is named the central sulcus.
Normal Brain MRI 433

Posteriorly, the isthmus of the cingulate gyrus


is located between the splenium of the corpus
callosum and the anterior calcarine sulcus9 and
continues laterally as the parahippocampal gyrus
where its superior border is demarcated by the
hippocampal fissure. The hippocampal fissure
continues above the body of the corpus callosum
as the callosal sulcus (see Fig. 3).10 Anteriorly, the
cingulate gyrus dives under the rostrum of the
corpus callosum and becomes the subcallosal
area.10 The posterior medial parietal lobe, or precu-
neus, is seen anterior to the parietooccipital sulcus.
The calcarine sulcus divides the medial occipital
lobe into the cuneus and lingual gyrus (see Fig. 6).
The lamina terminalis demarcates the anterior
wall of the third ventricle and plays a role in cardio-
vascular and body fluid homeostasis.11
The hippocampal formation, found in the medial
temporal lobe, is composed of the subiculum, the
dentate gyrus, the hippocampus, and their contin- Fig. 7. Coronal T2-weighted image (repetition time,
uations around the corpus callosum10 and is best 6360 ms; echo time, 89 ms) demonstrating the inferior
and medial border of the temporal lobe, the parahip-
seen on coronal images. The parahippocampal
pocampal gyrus (PHG). The subiculum (S) and body of
gyrus forms the inferomedial border of the temporal the hippocampus (H) are also demarcated. The hippo-
lobe (Fig. 7). The subiculum forms the medial and campal sulcus is seen on the left (black arrow), as are
superior curvature of the parahippocampal gyrus the collateral sulcus (cs) and the occipitotemporal
and arcs into the hippocampal fissure.10 The sulcus (ots). Note the flow voids in the ambient cistern
hippocampal fissure is bordered superiorly by the (white arrow) and sylvian fissure (SF). The superior,
dentate gyrus and inferiorly by the subiculum.10 middle, and inferior temporal gyri (STG, MTG, ITG,
The hippocampus forms a cap on the hippo- respectively) are also seen. At this level, the bodies
campal fissure and bulges into the medial wall and of the fornices (F) are present inferior to the corpus
floor of the temporal horn.10 callosum (CC) and within the lateral ventricles (LAT).
The cingulate gyrus (C) and interhemispheric fissure
The fornix, a white matter tract that connects
(IHF) are present in the midline.
the subiculum and the mammillary bodies, origi-
nates in the subiculum where its axons travel
laterally to form a thin layer of white matter along
the inferomedial temporal horn.10 The fornix contains, among others structures, the extreme,
continues posterior to the undersurface of the external, and internal capsules, the claustrum,
splenium, and most fibers arch upward, anterior, the putamen, the globus pallidus, the caudate
and inferior to the splenium to form the crura of nucleus, the amygdala, the diencephalon, and
the fornices,10 ending in the mammillary bodies thalamic structures. It is related to motor and
(see Fig. 2). sensory functions, emotion, endocrine integration,
The amygdala is a gray matter structure located and cognition.14 All the information passing be-
just lateral to the uncus and anterior to the tween the brainstem and cortex passes through
temporal horn and remains attached to the puta- fibers in the central core.15 Anteriorly, the central
men superiorly.10 The tail of the caudate nucleus core gray matter consists of the caudate nucleus
terminates in the amygdala. The anterior commis- and, to a lesser extent, the lentiform nucleus (puta-
sure is a white matter tract located in the anterior men and globus pallidus), whereas the white matter
wall of the third ventricle at the junction of the consists primarily of the anterior limb of the internal
lamina terminalis and the rostrum of the corpus capsule.15 More posteriorly, at the level of the
callosum that connects the 2 temporal lobes and foramen of Monro, the internal capsule contributes
is easily seen on MR images.12 most of the white matter, whereas the lentiform
nucleus contributes most of the gray matter, with
a lesser contribution from the caudate nucleus.15
Deep Structures
At the posterior insular level, most of the gray
The deep central cerebral structures located matter contribution arises from the thalamus and
between the insula and the sagittal midline are the white matter from the posterior limb of the
referred to as the central core (Fig. 8).13 This core internal capsule.15
434 Pukenas

pathway runs in the most anterior segment, the


basis; the cranial nerve nuclei and somatosensory
tracts are present in the tegmentum, located ante-
rior to the fourth ventricle; and the quadrigeminal
plate and superior (pons) and inferior (medulla
oblongata) medullary velum form the tectum.20,21
The pineal gland can be seen inferior to the corpus
callosum on sagittal midline images.
The diencephalon contains the third ventricle
and its bounding structures and is divided into 4
parts: the epithalamus, hypothalamus, subthala-
mus, and thalamus.20 The epithalamus contains
the trigonum habenulae, the pineal gland, and
the posterior commissure.20 The hypothalamus
Fig. 8. Axial T2-weighted image (repetition time,
consists of the mammillary bodies, the tuber ciner-
6900 ms; echo time, 96 ms) through the basal ganglia
demonstrating the head of the caudate (C), anterior eum, the infundibulum, the hypophysis, and the
limb of the internal capsule (white arrow), putamen optic chiasm (see Fig. 6).20 The thalamus is the
(P), globus pallidus (GP), thalamus (THAL), and corpus largest part of the diencephalon and is situated
callosum (CC). on both sides of the third ventricle (see Figs. 6, 8
and 9).20 The anterior end of the thalamus forms
the posterior boundary of the interventricular
Cerebellum foramen, whereas the posterior aspect expands
The cerebellum can be divided into 4 lobes: the and overlaps the superior colliculus.20 Medially,
anterior and posterior lobes, separated by the the posterior portion of the thalamus, the pulvinar,
primary fissure (see Fig. 3), the vermis, and blends into the lateral geniculate body, which is
the flocculonodular lobe. The inferior vermis involved in the visual pathway.20 Beneath the pul-
and flocculonodular lobes help regulate balance vinar is the medial geniculate body, forming part of
and eye movements via interactions with the the auditory pathway.20
vestibular system. It is generally assumed that The midbrain connects the diencephalon to the
these regions, along with other parts of the vermis, pons and has a characteristic midline cleft, the in-
are involved in control of the proximal trunk terpeduncular cistern, which is bounded on each
muscles, whereas the more lateral regions help
control the distal appendicular muscles. The most
lateral cerebellar hemispheres are involved in
motor planning.16 The cerebellar tonsils are located
inferolaterally and herniate through the foramen
magnum in patients with Chiari malformations.17
The dentate nucleus may be seen on T1-weighted
images and is located lateral to the white matter
of the cerebellum.18 There are 3 main white matter
tracts connecting the cerebellum to the brainstem:
the superior cerebellar peduncle (cerebellum to
midbrain), middle cerebellar peduncle (pons to
cerebellum), and inferior cerebellar peduncle
(medulla to cerebellum).19

Brainstem
The brainstem, consisting of the diencephalon,
mesencephalon, pons, and medulla oblongata,
serves as the connection between the cerebral
hemispheres, the cerebellum, and the medulla,
Fig. 9. Axial T2-weighted image (repetition time,
and is responsible for the basic life functions 6900 ms; echo time, 96 ms) through the basal ganglia
such as breathing, heartbeat, blood pressure, demonstrating the anterior commissure (AC), pineal
consciousness, and sleep.20 There are 3 main gland (P), thalamus (THAL), and flow voids within
longitudinal divisions of the brainstem: the basis, the anterior cerebral arteries located in the interhemi-
the tectum, and the tegmentum. The motor spheric fissure (white arrow).
Normal Brain MRI 435

side by the crus cerebri (see Fig. 5).20 The tectum


contains the quadrigeminal plate and lies posterior
to the cerebral aqueduct. The superior colliculi
contain centers for visual reflexes and connect to
the superior brachium via the lateral geniculate
body and the optic tract.20 The inferior colliculi
contain auditory centers and connect to the medial
geniculate via the inferior brachium.20 The fourth
cranial nerves arise in the midline, below the infe-
rior colliculi. The red nucleus is seen as areas of
decreased signal intensity on T2-weighted images
as a result of their high iron content (Fig. 10).20 The
third cranial nerve also arises from the midbrain.
The pons, named for its appearance as a bridge
between the cerebellar hemispheres, has a large
convex anterior surface (see Fig. 6) containing
transverse fibers that converge to form the middle Fig. 11. Axial T2-weighted image (repetition time,
cerebellar peduncles.20 The sixth, seventh, and 6900 ms; echo time, 96 ms) through the medulla
eighth cranial nerves emerge from a groove at demonstrating the medullary pyramid (P), olive (O),
the pontomedullary junction; the trigeminal nerve cerebellar tonsil (T), and cerebellar vermis (V). The
seventh nerve (arrow, 7) is seen coursing toward the
also emerges from the pons.20 The posterior
internal auditory canal (IAC).
pons forms the roof of the fourth ventricle and is
covered by the cerebellum.20
The medulla oblongata connects the spinal cord medulla, and the rootlets of the hypoglossal nerve
and pons (Fig. 11). Running along both sides of the arise from the preolivary groove.20
median fissure, the pyramids are composed of The pituitary stalk projects inferiorly from the
axons from the precentral gyrus that innervate infundibular recess of the third ventricle, leading
the spinal cord gray matter (corticospinal or pyra- into the bilobed pituitary gland. The anterior lobe
midal tracts).20 Lateral and posterior to the pyra- appears isointense to the brain on T1-weighted
mids, separated by the preolivary groove, are and T2-weighted images, although hyperintensity
elongated elevations formed by the olivary nuclei, on T1-weighted images has been reported in preg-
the medullary olives. The ninth, tenth, eleventh, nancy. For as yet unknown reasons, the posterior
and twelfth cranial nerves are located in the pituitary gland is hyperintense on T1-wieghted
images and shows lower intensity on T2-weighted
images. Injection of gadolinium results in prompt
enhancement of the anterior pituitary gland and
infundibulum. The normal pituitary gland has a max-
imal height of 8 mm in men and 9 mm in women.
Immediately posterior to the pituitary, the cortical
bone of the dorsum sella can be seen as a rim of
hypointense signal. Posterior to this hypointensity,
the fatty marrow of the clivus appears hyperintense
on T1-weighted images.1

IMAGING NOOKS AND CRANNIES


This section provides a few anatomic insights
about overlooked areas on specific sequences,
Fig. 10. Axial T2-weighted image (repetition time,
namely, sagittal T1-weighted and axial T2-
6900 ms; echo time, 96 ms) through the inferior
midbrain demonstrating areas of decreased T2 signal
weighted images.
(indicating iron deposition) within the red nucleus
(R) and substantia nigra (SN). The superior colliculus Sagittal T1
is also seen at this level. Flow voids within the internal
carotid artery terminus (i), middle cerebral artery Although several anatomic features of the brain
(mca), anterior cerebral artery (white arrow), and are well delineated on standard sagittal T1 images,
anterior communicating artery (black arrow) are these images also allow evaluation of the orbits
noted. and cranial marrow signal. T1-weighted images
436 Pukenas

provide some insight into cerebrovascular struc- occlusion. In addition to vessel patency, flow voids
tures, and normal flow voids can be visualized in on T2-weighted images may also suggest abnor-
the deep venous structures and dural venous malities in vascular caliber. It is not uncommon
sinuses. to detect middle cerebral artery aneurysms in the
The orbit is bounded medially by the thin-walled sylvian fissure or internal carotid artery aneurysms
lamina papyracea, separating the orbit from the near the clinoids. One pitfall may occur in the case
ethmoid air cells. The inferior boundary of the orbit, of a pneumatized clinoid process that can mimic
the orbital floor, also serves as the roof of the maxil- an internal carotid artery aneurysm.
lary sinus,22 whereas the orbital roof is formed by
the frontal bone. The extraocular muscles, seen DW Imaging
well on axial and sagittal T1-weighted images,
As discussed earlier, DW images are exquisitely
show slight increase in signal intensity relative to
sensitive to the detection of acute infarction. In
the temporalis muscle on T1-weighted images
addition, these images are fat-saturated, so evalu-
and greater enhancement relative to the temporalis
ation of calvarial lesions is aided by this sequence,
muscle after gadolinium adminstration.23 Thus, the
particularly if there is concern for a scalp or calva-
extraocular muscles should be evaluated on more
rial lipoma.
than 1 imaging sequence when evaluating for path-
ologic abnormalities. The normal orbital fat demon-
SUMMARY
strates increased signal intensity on T1-weighted
images and decreased signal intensity on T1- The exquisite detail provided by brain MR imaging
weighted fat-saturated images. When evaluating scans can make interpretation simultaneously
the orbital fat with frequency-selective fat suppres- straightforward and complicated, particularly to
sion techniques, field inhomogeneity can con- the novice. For this reason, it is essential to
tribute to incomplete fat suppression in the orbital become familiar with normal structures before
fat. Inversion recovery techniques can be particu- describing the pathologic condition. This article
larly useful because these sequences yield more serves as a practical reference point to further
uniform fat suppression.24 enhance knowledge of the intracranial anatomy.
Conversion of red (active) marrow to yellow (inac-
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