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Mendez2004 PDF
Mendez2004 PDF
Received 7 July 2003; received in revised form 17 November 2003; accepted 18 November 2003
Abstract
The bacteriophage elution procedure described further after adsorption to acetate–nitrate cellulose membrane filters allows better recovery
of phages concentrated from 1 l of water than elution proceduresm used previously. The improvement is due to the combined effect of the
eluent (3% (w/v) beef extract, 3% (v/v) Tween 80, 0.5 M NaCl, pH 9.0) and the application of ultrasound instead of agitation or swirling.
Average recovery of somatic coliphages, 82 ± 7%, was the greatest, and that of phages infecting Bacteroides fragilis, 56 ± 8%, the lowest,
with intermediate values for F-specific and F-specific RNA bacteriophages. Thus, the method allowed recovery of over 56% for all the phages
suggested as surrogate indicators. The method was then validated according to an International Standardisation Organisation validation
standard procedure and implemented in routine laboratories, which obtained reproducible results.
© 2003 Elsevier B.V. All rights reserved.
0166-0934/$ – see front matter © 2003 Elsevier B.V. All rights reserved.
doi:10.1016/j.jviromet.2003.11.013
20 J. Méndez et al. / Journal of Virological Methods 117 (2004) 19–25
It is well known that concentration efficiencies obtained for somatic coliphages, F-specific RNA bacteriophages
when testing natural samples for viruses are frequently sig- and B. fragilis phages, respectively were used as con-
nificantly lower than those reported in the publications de- trols in enumeration tests and for spiking of water in the
scribing the method as developed with reference laboratory method development experiments indicated further. As well,
bacteriophages. Also, Round Robin tests among different sewage derived phage stocks for SOMCPH, F-TOTPH,
laboratories show significant differences in concentration ef- F-RNAPH, BFRPHHSP40 and BFRPHRYC2056 were
ficiencies between the different laboratories (Melnick et al., prepared as indicated further for method validation
1984; Vilaginés et al., 1997). Many factors other than the studies.
concentration method itself seem to influence the recovery:
the characteristics of the water sample, the amount of sam- 2.3. Spiking phage suspensions
ple, the numbers of bacteriophages spiked and the bacterio-
phages groups themselves. Because of the many sources of Two kinds of phage suspensions were used.
uncertainty it is important to establish “standardised” pro-
cedures for evaluating concentration procedures, based on 2.3.1. For developing the modified method
both reliability and efficiency. Recently, a standard proce- Volumes of suspensions of phages X174, MS2 and
dure for validation of methods for concentration of bacte- B40-8 containing between 1.5 × 104 and 5.0 × 105 pfu per
riophages from water has been adopted by the International ml were added to the water sample to be submitted to con-
Standardisation Organisation (Anonymous, 2002). This pro- centration to reach a final concentration of 60–200 plaque
cedure does not give specific details of concentration meth- forming units per litre. After vigorous agitation, phages
ods, but provides a general framework for the evaluation in the sample were enumerated, either directly or after
of the suitability of a particular method for a given type dilution.
and volume of water. Secondly, it also discusses how to use
this information in establishing the actual values of bacte- 2.3.2. For validating the modified method
riophages in a given sample taken into account the numbers Sewage derived phage stocks were prepared as indicated
recovered after concentration. in the ISO 10705-3 Standard (Anonymous, 2003). Briefly,
We describe modifications introduced to the method first primary or secondary sewage effluent was either centrifuged
reported by Sobsey et al. (1990) and then modified by Sinton for 10 min at 2000 × g or filtered through a 12 m pore
et al. (1996). The modifications introduced were examined size membrane filter as described in Mendez et al. (2002).
for their impact upon the concentration of phages belonging Target bacteriophages were enumerated for initial titre. The
to the three groups reported above as potential indicators phage suspensions were stored at 4 ◦ C until the enumeration
from 1 l of drinking water. The final modified method was results were available. If necessary, the suspensions were
then validated according to the international validation stan- diluted to obtain concentrations of 60–200 plaque forming
dard mentioned above. Finally, the implementation of the units per ml of each of the phage groups. Since their numbers
method in routine microbiology laboratories and the repro- in sewage are different, these means that three sets of phage
ducibility of the results with sewage derived bacteriophages spike-stocks were prepared. Glycerol was added to a final
in these laboratories were assessed. concentration of 10% (v/v). Then, these suspensions were
distributed in 10 ml volumes in plastic containers, and frozen
2. Materials and methods at −20 or −70 ◦ C.
To ensure that sewage derived phages were distributed at
2.1. Phage assay random within and between the containers, the within and
between containers homogeneity was tested. Two contain-
Enumeration of bacteriophages was done by determin- ers for each phage group suspension (somatic coliphages,
ing the number of plaque forming units (pfu) by the dou- F-specific/F-specific RNA phages and phages infecting B.
ble agar layer technique according to standards ISO10705-1 fragilis infecting strains HSP40 and RYC2056) were thawed
(Anonymous, 1995), ISO10705-2 (Anonymous, 2000) and at room temperature, and from each container two 0.5 ml
ISO10705-4 (Anonymous, 2002), which describe methods aliquots for the target bacteriophages were assayed. The
for the detection and enumeration of F-specific (F-TOTPH) counts were then analysed for within (T1 ) and between con-
and F-specific RNA bacteriophages (F-RNAPH), somatic tainers (T2 ) homogeneity.
coliphages (SOMCPH) and phages infecting strains HSP40 T1 is a measure for the variation within one container of
(BFBHSP40) and RYC2056 (BFBRYC2056) of B. fragilis, spiking material (replicate variation). T2 is a measure for
respectively. the variation between different vials of one batch of spiking
material.
2.2. Bacteriophages
J
I
(zij − zi+ /J) 2
Phages X174, MS2 and B40-8, recommended by the T1 =
Standard ISO methods indicated above as reference phages (zi+ /J)
i=1 j=1
J. Méndez et al. / Journal of Virological Methods 117 (2004) 19–25 21
where zij is the number of pfu per analytical portion (j) of 2.4.3. Eluting conditions
vial i, and The effect on elution efficiency of swirling agitation and
ultrasound was compared as follows. The eluting conditions
J
were assayed with the eluting solution 1 that was confirmed
zi+ = zij be the most efficient as indicated in the results section. The
j=1 swirling agitation of the membrane filter submerged in elut-
ing solution was applied as indicated by Sinton et al. (1996).
being the sum of numbers of pfu in all containers counted Ultrasound was applied by submerging the flask or tube con-
(I, that in this case is 2) and J (in this case 2) the number taining the membrane filter into an ultrasound cleaning bath
of analytical portions per container. Degrees of freedom for for 4 min.
T1 are I(J − 1).
70
3. Results 60
% Recovery
50
3.1. Modifications assayed for the phage concentration
method 40
30
3.1.1. Amendment of the sample
The three reference bacteriophages studied (X174, MS2 20
3.1.4. Bacteriophages remaining in the filters The percentages of phages counted by platting the mem-
Even applying the best eluting solution and the best elut- brane filters varied from 13.5 to 21.6% for somatic col-
ing conditions, non-negligible numbers of phages, ranging iphages, 1.8–9.8% for F-specific bacteriophages, 0.8–8.8%
from 1 to 28% depending on the experiments and phages, for F-specific RNA phages, 11.6–19.6 for phages infecting
remained in the membrane filter. Consequently, it was rec- B. fragilis HSP40 and from 19 to 26.9% for phages infecting
ommended in the proposed method to include the count of strain RYC2056 of B. fragilis.
phages retained in the filter as part of the total number of The ISO validation procedure was applied to all phages
phages recovered as was recommended in the original meth- reported in Fig. 1 and results indicated neither volume ef-
ods (Sobsey et al., 1990; Sinton et al., 1996). fect, nor unacceptable relative standard deviation >0.5 for the
As a consequence of the results reported in this section, five groups of phages studied. The relative standard devia-
the final modified method was established as indicated in tions for the concentration efficiencies of the different phages
the Section 2. were: 0.19 for somatic coliphages, 0.23 for F-specific bacte-
riophages, 0.24 for F-specific RNA bacteriophages, 0.34 for
3.2. Evaluation and validation of the method bacteriophages infecting B. fragilis HSP40 and 0.28 for bac-
teriophages infecting B. fragilis RYC2056. Therefore, it was
The recovery efficiency of the method was evaluated for concluded that the method is reliable for volumes ranging
natural populations of phage, using phages partially purified from 100 ml to 1 l for somatic coliphages, F-specific RNA
from sewage as indicated in the material and methods sec- bacteriophages and bacteriophages infecting B. fragilis.
tion. Results expressed as the arithmetic mean of the recover- For brevity, only the results corresponding to the
ies for all volumes tested, since as indicated below there was F-specific RNA bacteriophage are reported in detail below.
no volume effect, are shown in Fig. 2. Recovery of somatic The sewage derived spiking material showed an excellent
coliphages was significantly higher (multiple range test anal- homogeneity both within and between vial since values of
ysis using least significant differences between means using T1 and T2 were 0.034 and 0.41 well below 5.99 and 3.84
Student’s t-test, P < 0.05) than the recoveries of F-specific, indicated in the ISO validation standard.
F-RNA bacteriophages and bacteriophages infecting B. Fig. 3 shows the plotted arithmetic average of the recover-
fragilis. In contrast, the recoveries of F-specific bacterio- ies (R(%)) plus the confidence intervals obtained by concen-
phages, F-specific RNA phages and phages infecting B. trating phages from 125, 250, 500 and 1000 ml. No signifi-
fragilis were similar (multiple range test analysis using least cant differences (ANOVA, P > 0.05) were detected. There
significant differences between means using Student’s t-test, was not volume effect in the percentage of phages detected
P > 0.05). by platting the membrane filter.
The calculation of the combined (all volumes) recoveries
(R(%)) gave an arithmetic mean average of value of 63.7 with
100 a standard deviation of 14.8. The relative standard deviation
90
80
100
70
90
60
80
% Recovery
50
70
40
60
% Recovery
30
50
20
40
10
30
0
N= 20 20 20 20 20
20
SOMCPH FTOTPH FRNAPH BFRPHHSP40 BFRPHRYC2056
Phage Group 10
0
Fig. 2. Average recovery of different groups of sewage derived phage from N= 5 5 5 5
1 l of water. (䊐) Indicates the arithmetic mean and bars indicate the 95% 125 250 ml 500 ml 1000 ml
confidence intervals. The arithmetic means correspond to the recoveries Volume
obtained in five tests performed at each of the four volumes. (SOMCPH),
somatic coliphages; (F-TOTPH) F-specific bacteriophages; (F-RNAPH), Fig. 3. Average recovery of sewage derived F-specific RNA phages from
F-specific RNA bacteriophages; (BFRPHHSP40) bacteriophages infecting four different volumes. (䊐) Indicates the arithmetic mean and bars indicate
B. fragilis strain HSP40 and (BFRPHRYC2056) bacteriophages infecting the 95% confidence intervals. Each value corresponds to five independent
of B. fragilis strain RYC2056. experiments.
24 J. Méndez et al. / Journal of Virological Methods 117 (2004) 19–25
50
seem contradictory, but it should be considered that the so-
40 matic coliphages are a very heterogeneous group (Ackerman
30 and Nguyen, 1983; Pedroso and Martins, 1995; Muniesa
et al., 1999) and that in municipal sewage the phages of the
20
family of X174 are not the most abundant (Muniesa, et al.,
10 1999).
0 The results of the standardised validation procedure in-
N= 20 21 20 22 20 32
SOMCPHc SOMCPH FRNAPHc FRNAPH BFRPHRYC2056c BFRPHRYC2056 dicate that the method is reproducible and that it can be
Phage Group easily implemented in routine laboratories with highly re-
Fig. 4. Average recoveries obtained by the laboratories participating in
producible results. The validation method used is simple
the interlaboratory exercise utilizing sewage derived phage. (䊐) Indicates and allows one to work with naturally occurring phages at
the arithmetic mean and bars indicate the 95% confidence intervals. concentrations approaching those found in nature. Some
For each phage group the first value (c) is the one obtained by the experiments performed with un-homogeneous phage sus-
central laboratory and the second, the average value obtained by the all pensions gave very variable recoveries (data not shown)
participating laboratories. (SOMCPH) somatic coliphages; (F-RNAPH)
F-specific RNA bacteriophages and (BFRPHRYC2056) bacteriophages
and consequently indicated that when working with low
infecting of B. fragilis strain RYC2056. numbers of phage, the homogeneity of spiking material is
essential for calculating recovery efficiencies of concen-
tration methods. This may explain some extreme results
gave a value of 0.23 well below 0.5 as recommended in the reported in Round Robin exercises when concentrations of
ISO standard. low numbers of phages were tested (Melnick et al., 1984).
In our opinion it will be worthwhile to assay the suit-
3.3. Results of the collaborative study ability of similar approaches for validating concentration
methods for animal viruses and oocysts of protozoa as
Results expressed as the arithmetic mean of the Cryptosporidium.
recoveries ± the confidence intervals obtained by all the
participating laboratories are shown in Fig. 4, with the
central laboratory recoveries isolated for comparison In the Acknowledgements
figure are also reported the values obtained. Though not
significantly different (Student’s t-test for of each group of This study was partially supported by REN2002-04035-
bacteriophages, P > 0.05), the average arithmetic mean re- C03-03/HID from CICYT, Ministerio de Ciencia y Tec-
coveries of somatic coliphages and F-specific phages were nologı́a, Spain; and by grant 1999SGR00023 and CeRBa
lower than those of the validation study, whereas recoveries (Biotechnology Center Reference) from the Generalitat de
of phages infecting Bacteroides were identical. Catalunya.
As well, the relative standard deviations were 0.27 for
somatic coliphages, 0.40 for F-specific RNA bacteriophages
and 0.36 for bacteriophages infecting B. fragilis RYC2056, References
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