Professional Documents
Culture Documents
Biology 230 - Molecules and Cells: Terms
Biology 230 - Molecules and Cells: Terms
Terms
Contents adenylyl cyclase guanine nucleotide exchange
Terms autophosphorylation factor (GEF)
Introduction and Ca2+/calmoldulin-dependent inositol 1,4,5-triphosphate
Goals kinase (InsP3)
Cell Signaling calmodulin mitogen-activated protein (MAP)
Intracellular cAMP-dependent kinase (protein kinase
nuclear kinase A) nuclear receptor
receptors
cell signaling paracrine signaling
Extracellular
cyclic AMP (cAMP) phospholipase C
Receptors and
diacylglycerol Ras
Signal Transduction
endocrine signaling second messenger
Molecular Switches:
enzyme-linked receptor serine/threonine kinase receptor
Protein Kinases
extracellular receptor SH2 domain
and GTP-Binding
G-protein-linked receptor signal transduction
Proteins
G-Protein-Linked
GRB2 trimeric G-protein
Receptors GTP-binding protein (G-protein) tyrosine kinase receptor
The Cyclic AMP GTPase-activating protein (GAP)
Signaling Pathway
The Inositol
Phospholipid
Signaling Pathway
Enzyme-Linked Introduction and Goals
Receptors
This tutorial describes how cells communicate with each other. In a previous
SH2
tutorial you learned about a very specialized case of cell communication, neurons
domains
receiving and sending chemical signals. Now you will learn about some of the
Ras
more general mechanisms that cells use to receive and respond to signals.
signaling
Reception of a signal occurs through the binding of a signal molecule to a specific
Integration of
receptor; examples will be described and their mechanisms of action explained. In
Signaling Pathways
addition, you will learn how the binding of signal molecules to receptors triggers
Cell Signaling in
Plants intracellular changes in the receiving cell, affecting many cellular processes. You
Summary will learn how protein modification by phosphorylation and induced conformational
change by protein:protein interactions are used to mediate intracellular changes in
response to a signal.
https://wikispaces.psu.edu/display/Biol230WFall09/Signal+Transduction#SignalTransduction-SH2domains 1/12
10/29/2014 Signal Transduction - Biol230W Fall09 - Confluence
Cell Signaling
A hallmark of any multicellular organism is the ability of its cells to communicate
with each other. This communication, referred to as cell signaling, regulates
almost all cellular processes, including growth, metabolism, gene expression and
cytoskeletal organization. Cell signaling is the release of a signal molecule, a
chemical message, from one cell and the detection of this signal by another cell,
the target cell. The signal molecule is detected by the target cell through its
binding to a specific receptor. Once the receptor has bound the signal molecule, a
series of changes is initiated in the target cell that affects many cellular
processes. You have already learned about a rather specialized type of cell
signaling in the nervous system, chemical transmission at synapses that alter
membrane potential. We will now consider cell signaling that is more widespread
among many cell types. Cell signaling occurs in both animals and plants;
however, signaling in plants is not as well understood, so most of the material
presented in this tutorial relates to animal cells.
https://wikispaces.psu.edu/display/Biol230WFall09/Signal+Transduction#SignalTransduction-SH2domains 2/12
10/29/2014 Signal Transduction - Biol230W Fall09 - Confluence
GTP-Binding Proteins
Before we can discuss specific
signaling pathways, you need to
understand the activity and
regulation of protein kinases and
GTP-binding proteins. Protein
kinases are a class of enzymes that
phosphorylate other proteins; they
hydrolyze ATP to ADP and add a
Figure 2. Molecular switches: phosphate to specific amino acids
phosphorylation/dephosphorylation (see Enzyme Kinetics and Catalysis
and G-proteins. tutorial). Phosphorylation will alter
the conformation of the target
protein, and in some cases,
activate it, or in other cases,
inactivate it. Serine/threonine
protein kinases phosphorylate
those two residues, tyrosine protein
kinases phosphorylate the residue
tyrosine, and a few protein kinases
phosphorylate all three residues.
Phosphorylation is a reversible
modification of a protein, and there
are a large number of
phosphatases (enzymes that
remove phosphates from proteins
that are phosphorylated).
Therefore, the process of
phosphorylation/dephosphorylation
is a molecular switch;
phosphorylation by a specific
protein kinase activates (turns "on")
that protein, and dephosphorylation
by a specific phosphatase
inactivates (turns "off") that protein
(see Figure 2- panel A). Protein
kinases are an abundant and
diverse class of enzymes. It has
been estimated that in a typical
eukaryotic cell there are several
hundred different protein kinases,
and about one-third of the total
protein of the cell is
phosphorylated. All protein kinases
have a distinct subset of proteins
that they can phosphorylate,
however, some are more limited in
their substrates than others. Any
https://wikispaces.psu.edu/display/Biol230WFall09/Signal+Transduction#SignalTransduction-SH2domains 4/12
10/29/2014 Signal Transduction - Biol230W Fall09 - Confluence
G-Protein-Linked Receptors
The first signal transduction pathway that we will consider is triggered by G-
protein-linked receptors. G-protein-linked receptorsare the largest group in the
family of extracellular receptors found in animals, with as many as 2000 genes
encoding G-protein-linked receptors in the human genome. This diverse group of
receptors binds to a variety of signal molecules, including neurotransmitters (e.g.
acetylcholine) and hormones (e.g. adrenaline). The signaling pathways that they
initiate regulate cellular processes, including metabolism and transcription. Our
senses of sight and smell are mediated by G-protein-linked receptors. A large
https://wikispaces.psu.edu/display/Biol230WFall09/Signal+Transduction#SignalTransduction-SH2domains 5/12
10/29/2014 Signal Transduction - Biol230W Fall09 - Confluence
Trimeric G-proteins are composed of three subunits (alpha, beta and gamma)
and are attached to the inner face of the plasma membrane through a covalent
lipid modification. In the inactive state, the alpha subunit is bound to GDP and
the three subunits form a complex. Upon ligand binding to the G-protein-linked
receptor, the receptor is activated to bind the G-protein and induce a
conformational change in the alpha subunit of the G-protein, so that GDP is
exchanged for GTP and the three subunits dissociate to release the GTP-alpha
subunit and the beta-gamma complex. The activated GTP-alpha subunit can
induce a conformational change in several target proteins, and, in turn, activate
(or inhibit) them. The alpha subunit also contains the GTPase activity, so it
remains active for a brief time period, but then it hydrolyses the GTP to GDP. The
GDP-bound alpha subunit reassociates with the beta-gamma complex and the
G-protein returns to its inactive state, ready to be activated once more in
response to ligand binding and receptor activation. There are several different
activating and inhibitory G-proteins in most animal cells, some with a specific
tissue distribution and others with a wide tissue distribution.
https://wikispaces.psu.edu/display/Biol230WFall09/Signal+Transduction#SignalTransduction-SH2domains 6/12
10/29/2014 Signal Transduction - Biol230W Fall09 - Confluence
Enzyme-Linked Receptors
The predominant type of enzyme-linked
receptors found in animals is the family of the
tyrosine kinase receptors, also referred to as
receptor tyrosine kinases (illustrated in Figure 6).
These receptors have intrinsic kinase activity
Figure 6. Tyrosine encoded by the intracellular domain, also referred
kinase receptors. to as the cytoplasmic tail. Tyrosine kinase
https://wikispaces.psu.edu/display/Biol230WFall09/Signal+Transduction#SignalTransduction-SH2domains 8/12
10/29/2014 Signal Transduction - Biol230W Fall09 - Confluence
SH2 domains
How does autophosphorylation broadcast the signal to the interior of the cell?
Once the cytoplasmic tails of tyrosine kinase receptors are phosphorylated, they
act as docking sites that recruit and activate many different types of signaling
molecules, including a form of phospholipase C, protein kinases and G-proteins.
Although the recruited proteins are not similar in overall structure or function, they
all share the ability to directly, or indirectly, bind to the phosphorylated tyrosines of
the activated receptors via a shared protein domain. A distinct, relatively short
protein motif termed the SH2 domain, found in many unrelated signaling
molecules, encodes the phosphotyrosine binding activity. Therefore, proteins that
contain SH2 domains will be recruited to the activated tyrosine kinase receptors
via binding to the phosphotyrosines, and, in turn, will be activated either by
phosphorylation or simply by binding. For instance, phospholipase C is recruited
to the activated receptors by the binding of its SH2 domian to the
phosphotyrosines of the receptors. Upon binding, it is activated to generate
diacylglycerol and InsP3and to trigger the inositol phospholipid signaling pathway.
An activated pair of tyrosine kinase receptors can recruit many different proteins
simultaneously, each protein binding to a specific phosphotyrosine in the
cytoplasmic tails of the receptors.
Ras signaling
Among the proteins that are commonly recruited
to activate tyrosine kinase receptors is the G-
protein Ras. Ras is a member of a large family of
monomeric (single subunit) G-proteins. Ras has
a covalently attached lipid group and is
associated with the intracellular face of the lipid
bilayer. Similar to trimeric G-proteins, Ras is
Figure 7. Regulation
active when bound to GTP and inactive when
of Ras activity
bound to GDP. It is also a GTPase and it
hydrolyzes GTP to inactivate itself. There is
reciprocal regulation of Ras GTPase activity by
GTPase-activating proteins (GAPs) that
promote hydrolysis of GTP, and guanine
nucleotide exchange factors (GEFs) that
promote the exchange of GDP for GTP (see
https://wikispaces.psu.edu/display/Biol230WFall09/Signal+Transduction#SignalTransduction-SH2domains 9/12
10/29/2014 Signal Transduction - Biol230W Fall09 - Confluence
Although each pathway has been presented as distinct and separate, this is not
true in a cell. Any given animal cell responds to multiple signals simultaneously.
Some signals trigger G-protein-linked receptor pathways, and others trigger
enzyme-linked receptor pathways. There is also cross talk between pathways. For
example, recall that phospholipase C and the inositol phospholipid signaling
pathway can be activated via G-protein-linked receptors and tyrosine kinase
receptors.
Sometimes distinct signals can act synergistically to reinforce the same changes
in a cell, whereas other times they can act antagonistically and have opposing
https://wikispaces.psu.edu/display/Biol230WFall09/Signal+Transduction#SignalTransduction-SH2domains 10/12
10/29/2014 Signal Transduction - Biol230W Fall09 - Confluence
effects in a cell. For instance, a cell may receive two signals that both induce
proliferation, or one signal that is proliferative and the other a cue to stop dividing.
Signals can also result in different outcomes in different cell types, depending on
the receptors and other signaling molecules expressed in the cell. In fact, there is
a whole network of signaling pathways in cells that run parallel, that intersect, and
that act either synergistically or antagonistically.
Summary
Cells communicate through the actions of chemical signals. These can be locally
acting paracrine signals or globally acting endocrine signals that circulate in the
bloodstream and affect cells far from the source. The signal itself can be a
protein, peptide or small organic molecule. All signals bind to a specific receptor
and trigger a set of intracellular events that alter the state of the cell. Lipid-soluble
signals, such as the sex hormones, pass directly through the plasma membrane
and bind to intracellular nuclear receptors that are in an inactive state in the
cytoplasm. When the hormone binds to the receptor, the complex enters the
nucleus and directly binds to DNA to regulate gene expression. Extracellular
signals are more common. These molecules cannot enter the cell by passive
diffusion; instead, they bind to receptors on the cell surface. Once the
extracellular receptor is bound, it is activated and will recruit and activate a variety
of proteins, resulting in a signal transduction pathway.
Two distinct groups of extracellular receptors that are common in animals are G-
protein-linked receptors and enzyme-linked receptors. G-protein-linked receptors
bind extracellular ligand (a messenger) and activate an intracellular trimeric G-
https://wikispaces.psu.edu/display/Biol230WFall09/Signal+Transduction#SignalTransduction-SH2domains 11/12
10/29/2014 Signal Transduction - Biol230W Fall09 - Confluence
protein by stimulating the alpha subunit to bind GTP, in favor of GDP, and
dissociate from the beta-gamma subunits. The GTP-bound alpha subunit is
active for a period of time and then hydrolyzes the GTP to return to the inactive
GDP-bound state. During the period that the G-protein is active, it will trigger the
release of second messengers through a variety of mechanisms. Some G-
proteins activate adenylyl cyclase to synthesize cAMP. cAMP, in turn, activates
the cAMP-dependent kinases. Other G-proteins stimulate phospholipase C, an
enzyme that generates InsP3 and diacylglycerol. Diaclyglycerol and calcium
activate protein kinase C. InsP3 triggers the opening of InsP3-gated calcium
channels in the ER and results in a rapid influx of calcium ions. Calcium ions have
multiple effects in a cell. Many of these are mediated by the calcium-binding
protein calmodulin, which, in turn, activates other proteins (including the
Ca^+2^/calmodulin-dependent kinases).
Plants have distinct signaling pathways that share some common features with
the signaling pathways in animals. The predominant type of receptor in plants is
the serine/threonine kinase receptor. These receptors undergo
autophosphorylation when active and recruit other proteins via binding to
phosphoserines and phosphothreonines.
Added by Anonymous , last edited by GRAHAM HUGH THOMAS on Aug 21, 2009 16:25
https://wikispaces.psu.edu/display/Biol230WFall09/Signal+Transduction#SignalTransduction-SH2domains 12/12