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Two Colorimetric Ampicillin Sensing Schemes Based On The Interaction of Aptamers With Gold Nanoparticles
Two Colorimetric Ampicillin Sensing Schemes Based On The Interaction of Aptamers With Gold Nanoparticles
https://doi.org/10.1007/s00604-019-3524-4
ORIGINAL PAPER
Received: 9 February 2019 / Accepted: 19 May 2019 / Published online: 1 July 2019
# Springer-Verlag GmbH Austria, part of Springer Nature 2019
Abstract
Two kinds of aptasensors for ampicillin (AMP) are described. The assay strategies include the use of gold nanoparticles (AuNPs)
that were modified with (a) a thiolated aptamer (T-Apt), and (b) a non-thiolated polyadenine aptamer (polyA Apt). The AuNPs
and the aptamers were brought to interaction prior to addition of AMP. T-Apt and polyA Apt are adsorbed on the AuNPs by
different mechanisms. The adsorbed aptamer was able to bind the target while preventing non-specific interactions. Remarkably
different optical absorbances (measured at 520 and 680 nm) are produced the absence and presence of AMP. The assay can
selectively recognize AMP even in the presence of species of similar chemical structure. The T-Apt based assay has a linear
response in the 1–600 nM AMP concentration range and a 0.1 nM limit of detection. The respective data for the polyA Apt assay
are 1–400 nM and 0.49 nM.
coherent oscillation of the electrons. In addition, the SPR Millipore Milli-Q water purification system (Billerica,
band of AuNPs has strong distance-dependent properties, MA, USA) with an electric resistance >18.2 MΩ cm
whereby the aggregation of AuNPs of appropriate sizes used in all experiments. The glassware was rinsed with
(diameter > 3.5 nm) can induce interparticle surface plas- aqua regia (mixture of nitric acid and hydrochloric acid,
mon coupling, resulting in a visible color change from red optimally in a molar ratio of 1:3) and rinsed with ultra-
to blue [26]. Thus, AuNPs provide a practical platform for pure water and dried before use.
colorimetric assay of any target analyte.
Typically in design and construction of colorimetric Apparatus
aptasensor two strategies including free [27, 28] and adsorbed
[29–31] aptamer were used. In the free aptamer strategy, the Colorimetric assays were recorded on BioTek Synergy HTX
aptamer and analyte were mixed together to allow binding Multi-Mode Reader. A Zeiss EM10C microscope was used
afterwards exposure to the gold nanoparticles (AuNPs). for TEM analyses.
Interactions between the non-bound targets and AuNPs sur-
face resulted in a number of false positives responses and Synthesis of AuNPs
therefore lead to reduction of sensitivity of this colorimetric
method. Currently, one of the best methods to conjugate AuNPs were synthesized based on the previously published
aptamers on gold nanoparticles surface is using thiol modified protocol [40]. The information is available in supporting in-
aptamers [32]. However, studying non-thiolated DNA is im- formation (synthesis of gold nanoparticles, Fig. S1).
portant for several reasons [33] but firstly, the cost of typical
synthesized aptamer is 90% less than thiolated counterpart. Fabrication of thiolated-aptamer conjugated
Secondly, fundamental understanding of the interaction be- to AuNPs (T-apt-AuNPs) probe
tween DNA and gold can be further increased. Finally, new
applications may be derived from this hybrid material includ- 100 μM aptamer heated at 90 °C for 3 min and then cooled at
ing biosensor development [34–36] control of enzymatic re- 4 °C for 1 h. Heating and immediately cooling of aptamer
action [37], nanoparticle synthesis [38], and medicine [39]. causes structural flexibility of the aptamer keep for binding
Ideally, non-thiolated DNA should adopt an upright confor- to AMP. The received T-aptamer (5′-thiol-modified aptamer)
mation just like the thiolated counterpart to achieve molecular to be in a disulfide form [HOCH3(CH2)5S-S-5′-oligo] that
recognition [33]. mercaptohexanol group protects it. DTT as a reducing agent
The main purpose of this study is, the comparison of two disrupt any disulfide bonds (-S-S-) and reduce them to free SH
methods including adsorbed T-Apt and polyA Apt on AuNPs groups that they ready to interaction with gold surface and
surface, on the performance of colorimetric aptasensor to de- adsorbed on AuNPs [32]. 10 μL DTT solution (1.0 N) and
tect AMP. Herein we use two methods to adsorb Apt on 50 μL (50 μM) aptamer were mixed using a vortex mixer. To
AuNPs surface, in the first method T-Apt conjugated to ensure that all disulfide groups are fully split, the mixture kept
AuNPs, while in the second method polyA modification-free at room temperature for 1.5 h. Via extracting with ethyl acetate
Apt conjugated to AuNPs prior to target addition. The 3 times using 50 μL per extraction, unfavorable thiol seg-
adsorbed aptamer can bind the analyte while hindering non- ments and excess DTT remove from the thiol-modified
specific interactions. aptamer mixture. After vortexing the mixture the upper layer
is discarded. The lower layer is T-Apt that ready to react di-
rectly to gold nanoparticles. Afterward, 40 μL AuNPs and
Experimental section 10 μL 0.5 μM T-Apt were incubated together for overnight.
The T-Apts were adsorbed on the surface of AuNPs through
Chemicals and materials firm covalent bond between SH and gold.
The sequence of AMP aptamer (ssDNA) is (5′-(SH)-(CH2)6- Fabrication of polyA aptamer conjugated AuNPs
G C G G G C G G T T G TATA G C G G - 3 ′ ) , 5 ′ - G C G G (polyA apt-AuNPs)
GCGGTTGTATAGCGG(T)15-(A)12–3′ were obtained from
Bioneer Co., Ltd.(Daejeon, south korea). Acetic acid, trisodium In the first stage, 1–3 μL of poly A-tailed aptamer (100 μM in
citrate, ethyl acetate, polydiallyldimethylammonium chloride 5 mM HEPES buffer, pH 7.6) and 250 μL of AuNPs (10 nM)
(PDDA), 4-(2-hydroxyethyl)-1-piperazineethanesulfonic acid was mixed together and briefly vortexed. Afterwards, citrate
(HEPES), Hydrogen tetrachloroaurate(III), dithiothreitol buffer with a final concentration of 10 mM (pH 3) was added
(DTT), citrate and ampicillin, amoxicillin, penicillin, to the above mixture. The mixture was incubated at room
benzylpenicillin and lincomycin obtained from Sigma temperature for 3 min, pH of solution by adding HEPES buff-
Aldrich. The ultrapure water which was obtained via a er with a final concentration of 30 mM (pH 7.6) returned to
Microchim Acta (2019) 186: 485 Page 3 of 10 485
neutral. The mixture 5–10 min was incubated. In the final Similarly, non-thiolated DNA (polyA Apt) can also be at-
stage, the polyA aptamer-modified AuNPs was centrifuged tached through amine groups of DNA base adsorption [43,
at 15,000 rpm and upper layer was discarded. In order to 44]. PolyA Apt is adsorbed on the surface of AuNPs by spe-
remove free polyA aptamer, pellet was washed with cific noncovalent nucleotide adsorption. A segment of
HEPES (5 mM, pH 7.6). To make sure that all the free polyadenine (polyA) can be used to attain a dense DNA at-
polyA aptamer are removed from the solution, this centri- tachment. As regards adenine is adsorbed with a higher affin-
fugation and washing method were repeated 4–5 times ity than thymine, a straight method is to make one end of
and the polyA Apt-AuNPs dispersed in HEPES (5 mM, polyA aptamer. The thymine chain is used as a spacer to keep
pH 7.6) for further use [33]. aptamer configuration which is very essential for the strong
interaction between the aptamer and its target. PolyA block to
Adsorbed T-apt ampicillin colorimetric assay serve as an anchor on AuNPs (e.g. a replacement of the thiol
functionality) Fig. 1 (c). So AuNPs are stabilized by the
In order to AMP analysis, 50 μL of T-Apt conjugated AuNPs aptamer (T-Apt or polyA Apt) against PDDA-induced aggre-
solution was combined to 10 μL of different AMP concentra- gation. However, when AMP exists, it forms the complex with
tions (0–600 nM). After 1 h, PDDA to final concentration of Apt specifically, which pick up the ssDNA layer from AuNPs
20 nM was added to the assay solution, and after 5 min the competitively. Then the color of the solution changes from red
UV-Vis measurements (400–800 nm). to purple due to the AuNPs aggregation, according to AMP
concentration.
Adsorbed polyA apt colorimetric assay
Optimization of the parameters
In order to AMP analysis, 50 μL of polyA Apt conjugated
AuNPs solution was combined to 10 μL of different AMP Optimization of the reaction parameters for adsorbed T-apt
concentrations (0–600 nM). After 1 h, PDDA to final concen- colorimetric assay
tration of 20 nM was added to the assay solution, and after
5 min the UV-Vis measurements (400–800 nm). In order to achieve optimal concentration of PDDA that is
sufficient for aggregate the gold nanoparticles, various
PDDA concentrations including 0, 3, 5, 10, 15, 20, 30 and
Results and discussion 40 nM are incubated with AuNPs (10 nM) for 15 min. Result
of optimization experiments showed that 20 nM PDDA is
Ampicillin (AMP) assay design sufficient concentration to aggregate the AuNPs and change
the red color of the gold nanoparticles to blue (Fig. S2).
The basis of the interaction between aptamer and its analyte Therefore 20 nM PDDA applied in this colorimetric assay.
molecule attributed to three important factors including repul- Afterward, the required amount of T-Apt which should be
sive or attractive electrostatic force, hydrogen bonding, adsorbed on the AuNPs surface and prevent aggregation of
noncovalent aromatic-aromatic interaction (aromatic stack- optimized gold nanoparticles. This optimum concentration of
ing) and Van der Waals forces [41]. In the attendance of the T-Apt retains the AuNPs red in color against PDDA (20 nM).
analyte, aptamer is folded into its 3D conformation to quite For optimization of T-Apt concentration, different concentra-
interact with its target (analyte). Interaction between 3- tions of T-Apt including 0.05, 0.1, 0.25, 0.5, 1, 2 and 3 μM,
dimensional of AMP aptamer and chemical structure of am- were added to a fix concentration of AuNPs (10 nM) in ultra-
picillin is shown in Fig. 1(a). Beta-lactam antibiotics such as pure water. After 20 min, PDDA (20 nM) was added to the
ampicillin have a beta-lactam ring in their structure. A primary solution, and after incubation for 5 min UV-Vis spectrum was
amine functional group and a benzene ring in the side chain recorded. Fig. S3 clearly shows that, 0.5 μM T-Apt via attrac-
(circled) of ampicillin molecular structure involved in reaction tive electrostatic force hybridize with PDDA and hinder the
between ampicillin and secondary structure of aptamer. Song aggregation of gold nanoparticles accordingly retain the red
et al. have shown that ampicillin aptamer has a lot of affinity to color of the AuNPs (dispersed state). Optimization of reaction
this side chain with high specificity [42]. According to their conditions causes set up a colorimetric aptasensor for quanti-
report, “-GGT(T)-” in the loop region of aptamer as well as “- tative determination of AMP with high sensitivity.
GC-” base pairing (circled) at the joint of a loop and stem is
responsible for the binding of ampicillin. The strategy for the Optimization of the reaction conditions for adsorbed polyA
colorimetric detection of AMP for both mentioned design (T- apt colorimetric assay
Apt and polyA Apt) is illustrated in Fig. 1. As shown in Fig. 1
(b), in the absence of AMP, T-apt is adsorbed on the surface of The required amount of polyA Apt which should be adsorbed
AuNPs by a strong covalent bond between SH and gold [32]. on the AuNPs surface and hinder aggregation of gold
485 Page 4 of 10 Microchim Acta (2019) 186: 485
nanoparticles optimized. This optimum concentration of AuNPs (10 nM) in ultrapure water. After 20 min, PDDA
polyA Apt retains the AuNPs red in color against PDDA (20 nM) was added to the solution, and after incubation for
(20 nM). For optimization of polyA Apt concentration, differ- 5 min UV-Vis spectrum was recorded. Fig. S4 clearly shows
ent concentrations of polyA Apt including 0.05, 0.1, 0.5, 1, that, 1 μM polyA Apt via attractive electrostatic force hybrid-
1.5, 2 and 2.5 μM, were added to a fix concentration of ize with PDDA and hinder the aggregation of gold
Fig. 2 Sensitivity of the aptasensor for AMP detection using adsorbed T- A680/A520 were fitted to a linear plot with a correlation coefficient of
Apt design. a Absorbance spectra of AuNPs in the presence of increasing 0.991. The inset shows the corresponding visual color changes of the
AMP concentrations. b Calibration plot of the aptasensor. The values of assay solutions
Microchim Acta (2019) 186: 485 Page 5 of 10 485
Fig. 3 Sensitivity of the aptasensor for AMP detection using adsorbed values of A680/A520 were fitted to a linear plot with a correlation
PolyA Apt design. a Absorbance spectra of AuNPs in the presence of coefficient of 0.981. The inset shows the corresponding visual color
increasing AMP concentrations. b Calibration plot of the aptasensor. The changes of the assay solutions
nanoparticles accordingly retain the red color of the AuNPs transformed to the 3-dimensional structure and because of
(dispersed state). higher affinity to AMP than PDDA, forms complex with
AMP. Therefore, the PDD released and caused to the aggre-
Spectrophotometric quantitative determination gation of gold nanoparticles. Accordingly, remarkable change
of ampicillin occurs in the color of gold nanoparticles from red (λmax =
520 nm) to blue (λmax = 680 nm) that recognizable with the
In citrate-capped gold nanoparticles, electrosteric stabilization naked eyes. This color change is related to the concentration
is the major factor for AuNPs to remain dispersed (red color) of PDDA which is straightly depends on the concentration of
in aqueous solution. Citrate anions, are located between the AMP. Hence, the present two methodologies including
gold nanoparticles, causes their electrostatic stability. But in adsorbed T-Apt and polyA Apt on AuNPs can be employed
the presence of the positively charged cationic polymer for detecting of ampicillin colorimetrically.
(PDDA) and electrostatic attractive between it and citrate, UV–Vis spectroscopy, TEM and visual detection used for
the electrostatic balance in the solution disappears and leads evaluate the sensitivity of this aptasensor. Different concentra-
to the aggregation of gold nanoparticles (blue color). Herein, tions of AMP from 0 to 600 nM were added into the assay
the cationic polymer PDDA was employed to aggregate solutions and then the UV-Vis spectrum from 400 to 800 nm
AuNPs. In this work, two kinds of ssDNA-functionalized was recorded. Figure 2 (adsorbed T-Apt method) and Fig. 3
AuNPs, T-Apt and polyA Apt, were synthesized through (adsorbed polyA Apt method) clearly show that during in-
self-assembly. They are attached to AuNPs from 5′ terminal creasing concentration of AMP, characteristic peak (λmax =
and 3′ terminal sequences, respectively. When AMP is absent, 520 nm) of gold nanoparticles reduction while a new peak
T-Apt or polyA Apt that adsorbed on the surface of AuNPs appears (λmax = 680 nm) which indicates the aggregation of
due to negatively charged phosphate backbone of aptamer AuNPs. Accordingly, color of assay solution will have an
forms duplex with cationic PDDA. Hence, Due to the lack obvious change from red (dispersed mode), purple to blue
of enough PDDA, the aggregation of AuNPs is hindered. (aggregated mode). For quantitative measurement of AMP,
Nevertheless After adding AMP, T-Apt or polyA Apt the variations of absorbance values (A680/520) were plotted
and calibration curve was obtained. The A680/520 is favorable Apt and adsorbed polyA Apt methods respectively. The pro-
proportionate to the AMP concentrations with a linear plot. In posed methods were linear in the concentration range of 1–
adsorbed T-Apt method, as demonstrated in Fig. 2(b) the ratio 600 nM and 1–400 nM in adsorbed T-Apt and adsorbed polyA
of absorbance values (A680/520) is fitted to the concentration of Apt designs, respectively. Also based on visual detection, in
AMP with a linear plot (R = 0.9910). Similarly, in adsorbed adsorbed T-Apt and polyA Apt strategy, AMP in the concen-
polyA Apt method as demonstrated in Fig. 3(b) the ratio of tration of 10 and 50 nM was detected by the naked eyes,
absorbance values (A680/520) is fitted to the concentration of respectively. Compared with the reported methods for ampi-
AMP with a linear plot (R = 0.9810). The formula 3α/slope cillin detection, these proposed bioassays are relatively high
was used for calculating of detection limit [45, 46], where α compared to those of a previously reported optical and elec-
display the standard deviation of the apparatus and slope is trochemical biosensor, which was shown in Table 1. In order
derived from linear calibration plot. The detection limit of the to confirm principle of this colorimetric bioassay, aggregation
aptasensor came out to be 0.1 nM and 0.49 nM in adsorbed T- behavior of AuNPs was further investigated by analyzing the
Microchim Acta (2019) 186: 485 Page 7 of 10 485
Fig. 5 Selectivity of the assay for the detection of AMP. a The 0.5 μM, and 600 nM respectively. b Relative response to the aptasensor
absorbance spectra of AuNPs with various antibiotics. The on treatment with different antibiotics. The inset shows the corresponding
concentration of all the antibiotics, PDDA and T-aptamer was 20 nM, images
samples via TEM. As shown in Fig. 4(a), the gold nanoparti- lead to aggregation of AuNPs by electrostatic interaction into
cles in their natural state monodispersed and spherical in es- larger clusters. Gold nanoparticles capped with citrate anion,
sence. The addition of an optimized concentrate of PDDA to maybe electrostatic attraction between cationic PDDA and
assay solution because of its interaction via attractive electro- citrate anion lead to come closer to AuNPs and aggregated.
static force with citrate anions that are located between gold As a result of this interaction, color of solution change to blue
nanoparticles, AuNPs aggregated and thereby exhibiting the (Fig. 4(e), (f)).
solution blue color (Fig. 4(b)). However, T-Apt or polyA Apt
that adsorbed on the surface of AuNPs due to negatively Selectivity of the assay
charged phosphate backbone of aptamer forms duplex with
cationic PDDA. Hence due to the lack of enough PDDA, Aptasensor selectivity for AMP detection was also evaluated.
AuNPs were maintained in the dispersive mode and the color For this, a number several of competing non-target antibiotics
of assay solution remained red (Fig. 4(c), (d)). Upon the ad- including amoxicillin, penicillin, benzylpenicillin, and linco-
dition of AMP to the solution, due to high affinity of aptamer mycin were individually added to the assay solutions, and the
(T-Apt and PolyA) to AMP, PDDA again becomes free and variations of absorbance values (ΔA) were calculated. Results
Fig. 6 Selectivity of the assay for the detection of AMP. a The 1 μM, and 200 nM respectively. b Relative response to the aptasensor on
absorbance spectra of AuNPs with various antibiotics. The treatment with different antibiotics. The inset shows the corresponding
concentration of all the antibiotics, PDDA and PolyA Apt was 20 nM, images
485 Page 8 of 10 Microchim Acta (2019) 186: 485
Table 2 Determination of AMP by adsorbed T-Apt and adsorbed PolyA-Apt methods in spiked milk samples
(Fig. 5(a), (b)) and (Fig. 6(a), (b)) showed that changes in 0.2775, R 2 = 0.992 and y = 0.0022x + 0.2559, R 2 =
color from red to blue and variations of absorbance values 0.981, where y the ratio of the absorbance (A680/520) and
(ΔA), was observable only for AMP. The biosensor works x represents the concentration of AMP (nM), in adsorbed
specifically only with ampicillin and gives an almost insignif- T-Apt and adsorbed polyA Apt assay schemes, respectively.
icant response to other antibiotics. Moreover, both designs As shown in Table 2, the recoveries were in the range of
assay that uses of T-Apt (Fig. 5) and polyA-Apt (Fig. 6) in 98.20–101.66% and 97.70–102.95% for adsorbed thiolated
construction of aptasensor do not significantly differ in the aptamer (T-Apt) and adsorbed non-thiolated polyadenine
specific recognized to ampicillin. aptamer (polyA Apt) assay strategies, respectively. Results
indicate that both developed aptasensors are adequate for the
determination of AMP in food samples.
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