Professional Documents
Culture Documents
Biocatalysis and Agricultural Biotechnology: A 1 B 1 B 1 C 1 B D 1 B 1
Biocatalysis and Agricultural Biotechnology: A 1 B 1 B 1 C 1 B D 1 B 1
Keywords: Study was carried out to isolate and characterize novel indigenous probiotic candidates from traditionally
Rice beer prepared rice beer locally known as Apong in Assam, India. The most potential Probiotic candidate was iden-
Probiotic bacteria tified as Bacillus velezensis strain DU14 (GenBank accession no. MK177191) on the basis of 16S rDNA gene
Exopolysaccharide sequencing. It was found to show significant tolerance in a pH range of 2–9 and survived in presence of 1% (w/v)
Antagonistic effect
of bile salt. It showed sensitivity against both broad and narrow spectrum antibiotics with antagonistic activities
Bacillus velezensis strain DU14
against both Gram positive (Bacillus cereus ATCC-11778) and negative and (Escherichia coli ATCC-25922) pa-
thogens. The isolate was found non haemolytic in nature and the cell-free supernatant concentrate (CFSC) of the
isolate showed no cytotoxicity against mouse liver cells. The FTIR analysis of exopolysaccharide synthesized by
the isolate showed the presence of υC=C-H stretch, υ-C=C stretch, υCH2 symmetrical stretch, υC-H bend, and υC-O stretch.
1. Introduction The state of Assam located in the Northeast region of India is famous
not only for its traditionally fermented food and beverages but also
Probiotics have been extensively researched as an adjunct or al- blessed with its biodiversity hotspots which are least explored till date.
ternative therapy against drug resistant pathogens (Forestier et al., Traditionally fermented rice beers that have been prepared and con-
2001). Probiotic bacteria have a key role in modifying the intestinal sumed as a part of their rituals and customs by the ethnic communities
microflora to better maintain digestive health and reducing gut re- since ages, are underexplored for their Probiotic potential (Saikia et al.,
lated disorders and heart diseases (Borruel et al., 2002). Some of the 2018). One such type of rice beer is locally known as ‘Apong’. Rice beer
most common Probiotics belong to the genera of Lactobacillus, Leu- is a fermented beverage which is a source of potential probiotic bac-
conostoc, Pediococcus and Bifidobacterium and have also been re- teria. However, limited work has been done in describing the probiotic
ported to be exhibit antagonistic effects against various pathogenic properties of traditional rice beer. Therefore, this study was undertaken
species of genera including Listeria, Clostridium, Salmonella, Shigella, to explore the potential probiotic characteristics of bacteria isolates
Escherichia, Helicobacter, Campylobacter, Candida etc. (Collado et al., from rice beer (Saikia et al., 2018). In brewing, the use of starter cul-
2007). Fermented foods and beverages that have been developed tures is aimed to increase the fermentation efficiency, to develop new
throughout the history of human civilization till the present day for beers, and to enhance the sensory complexity of the beer that is pro-
sustained nutrition and preserved foods are known as rich source of duced. In response to increased consumer demand toward new pro-
Probiotic microorganisms (Ray et al., 2016; Nematollahi et al., ducts, nowadays, there is a worldwide increase in popularity of craft
2016). There have been extensive studies describing screening beers. A new generation of products are now obtained in small brew-
characteristics of potential probiotic bacteria from diverse sources eries that focus on the production of traditional ales, lagers, and beer
such as traditional dairy food, swine origin, cheese, infant gut mi- styles that deviate from mainstream beer types.
crobiota etc. (Bao et al., 2010; Guo et al., 2010; Zago et al., 2011; Current study exploits the probiotic potential of bacterial isolates
Kirtzalidou et al., 2011; Coda et al., 2012). from traditionally fermented rice beer of Sivsagar district of Assam
∗
Corresponding author.
E-mail address: dborah89@gmail.com (D. Borah).
1
All the authors contributed equally.
https://doi.org/10.1016/j.bcab.2019.01.046
Received 8 December 2018; Received in revised form 22 January 2019; Accepted 24 January 2019
Available online 28 January 2019
1878-8181/ © 2019 Published by Elsevier Ltd.
T. Borah et al. Biocatalysis and Agricultural Biotechnology 18 (2019) 101008
Antibiotic susceptibilities of the isolated strains were examined by 2.6.2. Cytotoxicity assay on primary mouse liver cell line (Mus musculus)
Kirby-Bauer's disc diffusion method as per CLSI (Clinical and Cytotoxicity assay of CFSC was performed on primary mouse liver
Laboratory Standards Institute, USA) guidelines (Sweeney, 2018). The cells of Mus musculus (albino mouse) by the MTT method (Masters,
strains were tested for their susceptibilities against both broad and 2000). Hepatocytes were obtained by extracting the liver from the
narrow spectrum antibiotics as per CLSI guideline. The diameters of mouse through dissection (with essential ethical clearance) and sub-
zone of inhibition observed after overnight incubation at 37 °C were jecting the liver tissue to by physical (mastication) and chemical (0.5%
recorded. collagenase) breakdown. Hepatic cells population was adjusted to
2 × 106 cells/mL using a haemocytometer in DMEM (Dulbecco's Mod-
2.4. Evaluation of antagonistic effect of the most potent isolate ified Essential Media). Before proceeding with MTT assay, cell viability
was checked by Trypan Blue staining method. The cell containing
Cell free supernatant concentrate (CFSC) of the potential isolates media was added to a microtitre plate along with different dilutions of
with sensitivity against maximum numbers of antibiotics were screened the CFSC except in the blank well. All dilutions were taken in tripli-
for their antagonistic potential against both Gram positive (Bacillus cates. After incubation with MTT, cell viability was determined by
cereus ATCC no. 11778) and negative (Escherichia coli ATCC no. 25922) measuring the absorbance at 580 nm.
pathogens by agar well diffusion method. The cell free extract (CFE)
was prepared by centrifuging overnight culture of the isolates in MRS
broth at 10,000 rpm for 10 min at 4 °C. The CFE was collected and he- 2.7. pH tolerance test
ated to 70 °C (to inactivate proteases) and concentred to 1/10th volume
by rotary vacuum evaporator. This cell-free supernatant concentrate Growth of the potential isolate in a pH range of 2–10 was monitored
(CFSC) was passed through 0.22 μm membrane filters and evaluated for by measuring its absorbance at 600 nm followed by inoculation on
its antimicrobial activities. nutrient agar (NA) plates for the determination of its viability.
2
T. Borah et al. Biocatalysis and Agricultural Biotechnology 18 (2019) 101008
Fig. 1. Overall strategy for the screening of the potential probiotic isolates.
Table 2
Antibiogram of the isolate (as per CLSI guidelines).
Sl. no. Antibiotic Abbreviation Concentration (μg/discs) Resistance (R)/Sensitive (S) Zone inhibition (mm)
1 Ampicillin AMP10 10 S 8
2 Amikacin AK30 30 S 12
3 Ceftriaxone CTR30 30 S 17
4 Ceftazidime CAZ30 30 R –
5 Ciprofloxacin CIP5 5 S 38
6 Chloramphenicol C30 30 S 32
7 Clindamycin CD2 2 S 36
8 Erythromycin E15 15 S 32
9 Gentamicin GEN10 10 S 17
10 Imipenem IPM10 10 S 40
11 Metronidazole MT5 5 R –
12 Ofloxacin OF5 5 S 32
13 Penicillin P10 10 S 11
14 Rifampicin RIF5 5 R –
15 Vancomycin VA30 30 S 14
3
T. Borah et al. Biocatalysis and Agricultural Biotechnology 18 (2019) 101008
Fig. 2. (a) The isolate shows no haemolysis on blood agar (on left), whereas the control (S. aureus) on right shows clear zones around the colony indicates haemolysis;
(b) CFSC extracted from the isolate shows no cytotoxicity against mouse liver cells.
by plating on NA plates with appropriate dilution. 2.13. Identification of the potential isolate by biochemical characterization
and 16S rDNA gene sequencing
2.11. Extraction of bacterial exo-polysaccharide (EPS)
The potential Probiotic candidate was identified on the basis of
biochemical characterization as prescribed by Bergey's Manual of
Exopolysaccharide (EPS) was extracted from the most potential
Systematic Bacteriology (Table 3) followed by 16S rDNA gene se-
isolate by using the method described by cold acetone precipitation
quencing. The 16S rDNA gene was amplified by using P3 forward (
method (Nanda and Raghavan, 2014). Briefly, the most potential pro-
5′-AGAGTTTGATCATGGCTCAG-3′) and P13 reverse primers (
biotic bacteria were inoculated in 100 ml of Yeast mannitol glucose
5′-GGTTACCTTGTTACGACTT-3′) and the sequencing was done by
broth and incubated at 37 °C and 135 rpm overnight. After incubation,
outsourcing the amplicon to Pentavalent Bio Sciences Ltd., Banga-
100 μl was aseptically transferred to 500 ml of a fresh media in a conical
lore. The phylogenetic analysis of the consensus sequence hence
flask and was incubated for 5 days at 37 °C. Samples from flasks were
generated from forward and reverse sequence was carried out in
separated and concentrated to small volumes. For the precipitation of
MEGA6 software by Neigbour-Joining method with the top 10 most
EPS, equal volume of alcohol was added to the concentrated samples.
closely related strains based on BLAST hits. The bootstrap value was
The mixture was agitated during addition of alcohol to prevent local
set at 1000 and Enterobacter cloacae ATCC 23355 was forced as out
high concentration of the precipitate and left-over night at 4 °C. The
group.
mixture was then centrifuged at 7000 rpm for 20 min. After cen-
trifugation, the precipitate was collected in Petri plates and dried at
60 °C.
2.14. Statistical analysis
2.12. FTIR analysis of the EPS produced The results are the mean of experiments performed in triplicate with
standard deviation. Student's t-test was performed to see the sig-
IR spectroscopes of bacterial EPS along with a standard, dextran nificance (p-value < 0.05) differences in findings. All the statistical
sulphate (DS) were performed in a frequency range of 400 and analysis were performed by Graph padTM online tool (http://www.
4000 cm−1. graphpad.com).
4
T. Borah et al. Biocatalysis and Agricultural Biotechnology 18 (2019) 101008
5
T. Borah et al. Biocatalysis and Agricultural Biotechnology 18 (2019) 101008
Table 4
Some of the recent reports on probiotic characterization of various microbial isolates.
Sl no. Name of the isolate Country In-vitro cell surface property Antimicrobial assay References
origin
Hydrophobicity (%) Autoaggregation (%) Test microbes Zone of inhibition
(mm)
microorganisms of high molecular weight and long chain composed of established by other researchers (Gao et al., 2017; Yi et al., 2018).
sugar residue secreted by them into the surrounding environment. However, it was not reported to be present as a probiotic candidate in
Bacterial EPS are complex mixture of macro molecular poly electrolytes fermented rice beer. Moreover, the isolate shows probiotic efficacy in
including polysaccharides, protein and nucleic acids, each composition terms of hydrophobicity, autoaggregation, antimicrobial potential and
of variable molecular mass and structural properties. The FTIR result of safety assessment in accordance with other reported probiotic candi-
the EPS of isolate shows the presence of distinct peaks at 3274.24, dates isolated from traditionally fermented rice beer advocates its fu-
1577.1, 1454.13, 1236.9 and 1122.23 which represents υC=C-H stretch, υ- ture scopes (Table 4).
C=C stretch, υCH2 symmetrical stretch, υC-H bend, and υC-O stretch respectively
(Fig. 4). 4. Conclusion
The isolate was identified on the basis of biochemical tests and
phylogenetic analysis. The isolate shows positive result for ONPG (o- Isolation and characterization of indigenous probiotic candidates
Nitrophenyl-β-D-Galactopyranoside) test but negative results for all from fermented rice beer was carried out. The most potential isolate
other tests (Table 4). Phylogenetic tree constructed by using 16S rDNA was identified as Bacillus velezensis strain DU14 on the basis of 16S
sequence of the most potential isolate with 10 most closely related rDNA gene sequencing which was found to be fulfilling all the basic
strains based on BLAST hits confirms the identity of the isolate as Ba- criteria to be considered as a potential Probiotic candidate. The non-
cillus velezensis strain DU14 and the accession no. MK177191 was re- haemolytic and non-cytotoxic nature of the isolate further advocates
ceived from NCBI GenBank (Fig. 5). Probiotic and antimicrobial po- its potential application for commercial exploitation after further
tential of various strains of Bacillus velezensis were also discussed and research.
6
T. Borah et al. Biocatalysis and Agricultural Biotechnology 18 (2019) 101008
Fig. 5. Phylogenetic analysis of the isolate Bacillus velezensis strain DU14 (GenBank accession MK177191) with 10 most closely related species.
Conflicts of interest Conlon, M.A., Bird, A.R., 2015. The impact of diet and lifestyle on gut microbiota and
human health. Nutrients 7 (1), 17–44. http://10.3390/nu7010017.
Del Re, B., Sgorbati, B., Miglioli, M., Palenzona, D., 2000. Adhesion, autoaggregation and
The authors declare no conflict of interest. hydrophobicity of 13 strains of Bifidobacterium longum. Lett. Appl. Microbiol. 31,
438–442. https://doi.org/10.1046/j.1365-2672.2000.00845.x.
Acknowledgements Forestier, C., De Champs, C., Vatoux, C., Joly, B., 2001. Probiotic activities of Lactobacillus
casei rhamnosus: in vitro adherence to intestinal cells and antimicrobial properties.
Res. Microbiol. 152 (2), 167–173 (PMID: 11316370).
The author acknowledges Department of Biotechnology (DBT-HRD), Gao, X., Liu, Y., Miao1, L., Li, E., Sun, G., Liu, Y., Liu, Z., 2017. Characterization and
Govt. of India (Grant No. BT/04/NE/2009) for providing infrastructure mechanism of anti-Aeromonas salmonicida activity of a marine probiotic strain,
Bacillus velezensis V4. Appl. Microbiol. Biotechnol. 101 (9), 3759–3768. http://10.
facilities at Centre for Biotechnology and Bioinformatics, Dibrugarh 1007/s00253-017-8095-x.
University, DBT-BIF facility (Grant no. BT/BI/13/035/2017), DBT- Ghosh, K., Ray, M., Adak, A., Halder, S.K., Das, A., Jana, A., Parua, S., Vágvölgyi, C.,
Delcon facilities for providing access to online journals and depart- Mohapatra, P.K.D., Pati, B.R., Mondal, K.C., 2015. Role of probiotic Lactobacillus
fermentum KKL1 in the preparation of a rice based fermented beverage. Bioresour.
mental Animal Cell Culture facility to carry out cytotoxicity assay.
Technol. 188, 161–168. http://10.1016/j.biortech.2015.01.130.
Author also acknowledges Pentavalent Bio Sciences Pvt. Ltd., Bangalore Giri, S.S., Sen, S.S., Saha, S., Sukumaran, V., Park, S.C., 2018. Use of a potential probiotic,
for providing 16S rDNA gene sequencing services. Lactobacillus plantarum L7, for the preparation of a rice-based fermented beverage.
Front. Microbiol. 9, 1–11. https://doi.org/10.3389/fmicb.2018.00473.
Gueimonde, M., Sánchez, B., de los Reyes-Gavilán, C.G., Margolles, A., 2013. Antibiotic
Appendix A. Supplementary data resistance in probiotic bacteria. Front. Microbiol. 4, 202. http://10.3389/fmicb.
2013.00202.
Supplementary data to this article can be found online at https:// Guo, X.H., Kim, J.M., Nam, H.M., Park, S.Y., Kim, J.M., 2010. Screening lactic acid
bacteria from swine origins for multistrain probiotics based on in vitro functional
doi.org/10.1016/j.bcab.2019.01.046. properties. Anaerobe 16 (4), 321–326. https://doi.org/10.1016/j.anaerobe.2010.03.
006.
References Kirtzalidou, E., Pramateftaki, P., Kotsou, M., Kyriacou, A., 2011. Screening for lactobacilli
with probiotic properties in the infant gut microbiota. Anaerobe 17 (6), 440–443.
http://10.1016/j.anaerobe.2011.05.007.
Bao, Y., Zhang, Y., Zhang, Y., Liu, Y., Wang, S., Dong, X., Wang, Y., Zhang, H., 2010. Kumar, M., Ghosh, M., Ganguli, A., 2012. Mitogenic response and probiotic character-
Screening of potential probiotic properties of Lactobacillus fermentum isolated from istics of lactic acid bacteria isolated from indigenously pickled vegetables and fer-
traditional dairy products. Food Control 21, 695–701. http://doi.org/doi:10.1016/j. mented beverages. World J. Microbiol. Biotechnol. 28, 703–711. http://10.1007/
foodcont.2009.10.010. s11274-011-0866-4.
Bera, A., Biswas, R., Herbert, S., Kulauzovic, E., Weidenmaier, C., Peschel, A., Götz, F., Masters, J.R.W., 2000. Cytotoxicity and Viability Assays in Animal Cell Culture: a
2007. Influence of wall teichoic acid on lysozyme resistance in Staphylococcus aureus. Practical Approach, third ed. Oxford University Press, London.
J. Bacteriol. 189, 280–283. https://doi.org/10.1128/JB.01221-06. Naidu, A.S., Bidlack, W.R., Clemens, R.A., 1999. Probiotic spectra of lactic acid bacteria
Borruel, N., Carol, M., Casellas, F., Antolín, M., de Lara, F., Espín, E., Naval, J., Guarner, (LAB). Crit. Rev. Food Sci. Nutr. 39 (1), 13–126. http://10.1080/
F., Malagelada, J.R., 2002. Increased mucosal tumour necrosis factor alpha produc- 10408699991279187.
tion in Crohn's disease can be downregulated ex vivo by probiotic bacteria. Gut 51 Nanda, A., Raghavan, C.M., 2014. Production and characterization of exopolysacharides
(5), 659–664 (PMID: 12377803). (EPS) from the bacteria isolated from Pharma lab sinks International. J Pharm Tech
Botta, C., Langerholc, T., Cencič, A., Cocolin, L., 2014. In Vitro Selection and Res 6, 1301–1305.
Characterization of New Probiotic Candidates from Table Olive Microbiota. PLoS One Nematollahi, A., Sohrabvandi, S., Mortazavian, A.M., Jazaeri, S., 2016. Viability of pro-
9 (4), e94457. https://doi.org/10.1371/journal.pone.0094457. biotic bacteria and some chemical and sensory characteristics in cornelian cherry
Bujnakova, D., Kmet, V., 2002. Aggregation of animal lactobacilli with O157 en- juice during cold storage. Electron. J. Biotechnol. 21, 49–53. https://doi.org/10.
terohemorrhagic Escherichia coli. J Vet Med B Infect Dis Vet Public Health 49, 1016/j.ejbt.2016.03.001.
152–154 (PMID: 12019947). Ouwehand, A.C., Bergsma, N., Parhiala, R., Lahtinen, S., Gueimonde, M., Finne-Soveri,
Çakir, I., 2003. Determination of Some Probiotic Properties on Lactobacilli and H., Strandberg, T., Pitkälä, K., Salminen, S., 2008. Bifidobacterium microbiota and
Bifidobacteria. Ankara University Thesis of Ph.D. parameters of immune function in elderly subjects. FEMS Immunol. Med. Microbiol.
Coda, R., Lanera, A., Trani, A., Gobbetti, M., Di Cagno, R., 2012. Yogurt-like beverages 53, 18–25. http://10.1111/j.1574-695X.2008.00392.x.
made of a mixture of cereals, soy and grape must: mmicrobiology, texture, nutritional Pascual, L.M., Daniele, M.B., Ruiz, F., Giordano, W., Pájaro, C., Barberis, L., 2008.
and sensory properties. Int. J. Food Microbiol. 155, 120–127. http://10.1016/j. Lactobacillus rhamnosus L60, a potential probiotic isolated from the human vagina. J.
ijfoodmicro.2012.01.016. Gen. Appl. Microbiol. 54 (3), 141–148.
7
T. Borah et al. Biocatalysis and Agricultural Biotechnology 18 (2019) 101008
Rada, V., Splichal, I., Rockova, S., Grmanova, M., Vlkova, E., 2010. Susceptibility of from curd. Global Journal of Biology, Agriculture & Health Sciences 2, 119–122.
Bifidobacteria to lysozyme as a possible selection criterion for probiotic Sweeney, M.T., 2018. CLSI Performance Standards for Antimicrobial Disk and Dilution
Bifidobacterial strains. Biotechnol. Lett. 32, 451–455. https://doi.org/10.1007/ Susceptibility Tests for Bacteria Isolated from Animals. Clinical and Laboratory
s10529-009-0170-7. Standards Institute, CLSI standard VET01, Wayne, PA.
Ray, M., Ghosh, K., Singh, S., Mondal, K.C., 2016. Folk to functional: an explorative Voltan, S., Castagliuolo, I., Elli, M., Longo, S., Brun, P., D'Inca, R., Porzionato, A., Macchi,
overview of rice-based fermented foods and beverages in India. J Ethn Foods 3, 5–18. V., Palu, G., Sturniolo, G.C., Morelli, L., Martines, D., 2007. Aggregating phenotype in
https://doi.org/10.1016/j.jef.2016.02.002. Lactobacillus crispatusdetermines intestinal colonization and TLR2 and TLR4 mod-
Rivera-Espinoza, Y., Gallardo-Navarro, Y., 2010. Non-dairy probiotic products. Food ulation in murine colonic mucosa. Clin. Vaccine Immunol. 14, 1138–1148. http://10.
Microbiol. 27 (1), 1–11. http://10.1016/j.fm.2008.06.008. 1128/CVI.00079-07.
Saikia, D., Manhar, A.K., Deka, B., Roy, R., Gupta, K., Namsa, N.D., Chattopadhyay, P., Yi, Y., Zhang, Z., Zhao, F., Liu, H., Yu, L., Zha, J., Wang, G., 2018. Probiotic potential of
Doley, R., Mandal, M., 2018. Hypocholesterolemic activity of indigenous probiotic Bacillus velezensis JW: antimicrobial activity against fish pathogenic bacteria and
isolate Saccharomyces cerevisiae ARDMC1 in a rat model. J. Food Drug Anal. 26 (1), immune enhancement effects on Carassius auratus. Fish Shellfish Immunol. 78,
154–162. https://doi.org/10.1016/j.jfda.2016.12.017. 322–330. http://10.1016/j.fsi.2018.04.055.
Salminen, S., Isolauri, E., Salminen, E., 1996. Clinical uses of probiotics for stabilizing the Zago, M., Fornasari, M.E., Carminati, D., Burns, P., Suàrez, V., Vinderola, G., Reinheimer,
gut mucosal barrier: successful strains and future challenges. Antonie Leeuwenhoek J., Giraffa, G., 2011. Characterization and probiotic potential of Lactobacillus plan-
70 (2–4), 347–358 (PMID: 8992950). tarum strains isolated from cheeses. Food Microbiol. 28 (5), 1033–1040. http://10.
Shaikh, M., Shah, G., 2013. Determination of probiotic properties of lactic acid bacteria 1016/j.fm.2011.02.009.