Professional Documents
Culture Documents
Chapter 3 Example
Chapter 3 Example
By:
CIASICO, Mark Anthony L.
DEBUQUE, Ramon Paulo B.
ABUNTO, April Joanne R.
BAACO, Dorie Joy A.
BLANCAVER, Jenice Alyson D.
CAMPOSAGRADO, Emy Faye B.
CARAGAYAN, Kathleen Jade T.
CATANGCATANG, Charmane Amor M.
University of San Agustin
COLLEGE OF HEALTH AND ALLIED MEDICAL PROFESSIONS
General Luna St. Iloilo City, Philippines 5000
August 2018
ENDORSEMENT FOR PROPOSAL EVALUATION
____________________
Date
Jesusima P. Monserate
Sincerely,
TABLE OF CONTENTS
CHAPTER 1
Objectives 3
Hypothesis 4
Definition of Terms 5
CHAPTER 2
CHAPTER 3
Research Design 16
Extraction 18
Freeze drying 18
Data Gathering 19
Solvent Partitioning 20
MIC Determination 21
Bioauthography 24
Wastes Disposal 25
References 27
Appendices
Chapter I
INTRODUCTION
(You should start this by talking about the antibacterial cases which may include
some statistics)
Bacteria are living things that have only one cell. Under a microscope, they
look like balls, rods, or spirals. Some bacteria help to digest food, destroy disease-
causing cells, and give the body needed vitamins. Bacteria are also used in making
healthy foods like yogurt and cheese. Recently, much attention has been focused
to unravel the medical properties of natural products in tandem, the need to search
for effective new antibacterial and invention of novel therapeutic agents that could
bacterial infection)
For a long period of time, plants have been a valuable source of natural
products for maintaining human health, especially in the last decade, with more
intensive studies for natural therapies. The use of plant compounds for
Health Organization, medicinal plants would be the best source to obtain a variety
medicine, which has compounds derived from medicinal plants. Therefore, such
The mung bean (Vigna radiata) has been consumed as a common food in
China for more than 2,000 years. In the book Ben Cao Qiu Zhen (本草求真), the
and to moisturize the skin. The seeds of mung beans are also widely used as a
fresh salad vegetable or common food in India, Bangladesh, South East Asia, and
protein and dietary fiber, and significant amounts of bioactive phytochemicals. High
are thought to be the main contributors to the antimicrobial of this food and are
Klebsiella pneumoniae and Salmonella spp. Using agar disk diffusion method and
antimicrobial activities against all the tested gram negative bacteria with the
Objectives
antibacterial compounds.
through bioautography.
4
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COLLEGE OF HEALTH AND ALLIED MEDICAL PROFESSIONS
General Luna St. Iloilo City, Philippines 5000
Hypothesis
Student Researchers. This study will mold the skills and capabilities of the
concerning the discovery of new drugs. (Insert some Agustinian values related to
the pursuit of truth etc. because amo na ang ginapangita ni maam sima)
Community. This study will serve as a basis for the discovery and manufacture of
Farmers. This study will help increase the income in the farming industry due to
drugs.
5
The Vigna radiata will be collected at Barotac, Viejo during the month of
November. Artificial drying via oven to dry the Vigna radiata and then pulverize
using a herbal grinder. It will be decocted and filtered using filter paper. Freeze
drying will then be performed to remove moisture from the Vigna radiata aqueous
well diffusion method. Solvent Partitioning will be used to separate the freezed
dried extract using Methanol as a polar solvent and Hexane as a non polar solvent
to classify and separate their constituents according to their polarity. The anti-
bacterial property of the subextract of each polarity using Agar well method. Thin
that exhibited the antibacterial property. To further identify the components of the
subextracts, spray reagents such as polyethylene glycol reagent, iron (III) chloride
confirm the bioactive bond that is responsible for the antibacterial activity. FTIR
analysis will be performed to identify the functional groups present in the bioactive
bond.
Definition of Terms
The following terms used in the study are defined according to conceptual
ancient times. It is still widely grown in Southeast Asia, Africa, South America and
Australia. It was apparently grown in the United States as early as 1835 as the
Chickasaw pea. It is also referred to as green gram, golden gram and chop suey
bean. Mung beans are grown widely for use as a human food (as dry beans or
fresh sprouts), but can be used as a green manure crop and as forage for livestock.
material.
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COLLEGE OF HEALTH AND ALLIED MEDICAL PROFESSIONS
General Luna St. Iloilo City, Philippines 5000
In this study, agar well diffusion method will be used to assess the
used clinically to measure antibiotic resistance and industrially to test the ability of
With this method, zone diameters should be measured from the back of the
method for analyzing mixtures by separating the compounds in the mixture. TLC
can be used to help determine the number of components in a mixture, the identity
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COLLEGE OF HEALTH AND ALLIED MEDICAL PROFESSIONS
General Luna St. Iloilo City, Philippines 5000
progress of a reaction.
compounds and to repress the growth of others; used to assay certain antibiotics.
(Chemistry-dictionary, 2012)
compounds that will exhibit the antibacterial activity of the Mung bean (Vigna
radiata).
LibreTexts, 2015)
antibiotic that inhibits the growth of a specific organism. (Medical Dictionary, 2012)
order to inhibit the growth of the organism. Micro Broth Dilution Assay will be used
Chapter II 9
Escherichia coli
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frequently used as a faecal indicator bacterium (FIB) for assessing water quality.
spread of this pathogen to food, soil, and water.( Ishii and Sadowsky 2008)
environment through faeces and waste water treatment plants (Berthe et al. 2013).
intestinal tract, even though the anaerobic bacteria outnumber E. coli by many
Staphylococcus aureus
colonizer (e.g., nares (primary reservoir), pharynx, axilla, groin, and/or damaged
infections. The past 2 decades have witnessed two clear shifts in the epidemiology
infections driven by strains with certain virulence factors and resistance to β-lactam
agent)
The use of and search for drugs and dietary supplements derived from
none are used as antimicrobials. Traditional healers have long used plants to
tannins, terpenoids, alkaloids, and flavonoids, which have been found in vitro to
have long applied poultices and imbibed infusions of hundreds, if not thousands,
Neanderthals living 60,000 years ago in present-day Iraq used plants such as
hollyhock, these plants are still widely used in ethnomedicine around the world.
Historically, therapeutic results have been mixed; quite often cures or symptom
(Amoros et al., 1992). Hippocrates (in the late fifth century B.C.) mentioned 300 to
400 medicinal plants (Schultes, 1996). In the first century A.D., Dioscorides
wrote De Materia Medica, a medicinal plant catalogue which became the prototype
healing plants. Relatively small percentages (1 to 10%) of these are used as foods
by both humans and other animal species. It is possible that even more are used
2003). Most are secondary metabolites, of which at least 12,000 have been
isolated, a number estimated to be less than 10% of the total (Schultes, 1997). In
give plants their odors; others (quinones and tannins) are responsible for plant
pigment. Many compounds are responsible for plant flavor (e.g., the terpenoid
capsaicin from chili peppers), and some of the same herbs and spices used by
12
Figure 2.1 Major group of Antibacterial compounds from plants (if you
can add chemical structures the better)
Common Scientific name Compound Class Activity Relative Reference(s)
name toxicity
Aloe Aloe Latex Complex Corynebacterium, 2.7 Martinez,199
barbadensis, Alo mixture Salmonella, Strept
e vera ococcus, S. aureus
6
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13
Figure 2.2 Major classes of antimicrobial compounds from plants
Class Subclass Example(s) Mechanism Reference(s)
Phenolics Simple phenols Catechol Substrate deprivation Peres, 1997
Epicatechin Membrane disruption Toda, 2002
Phenolic acids Cinnamic acid Fernandez, 1996
Quinones Hypericin Bind to adhesins, King, 1994
complex with cell wall,
inactivate enzymes
Flavonoids Chrysin Bind to adhesins Perrett, 1995
Flavones Complex with cell wall
Abyssinone Inactivate enzymes Fujioka et al., 1997
Inhibit HIV reverse Harris, 2007
transcriptase
Tannins Ellagitannin Bind to proteins Hamburger, 1998
Bind to adhesins
Enzyme inhibition
Substrate deprivation
Complex with cell wall Hasegawa, 2000
Membrane disruption
Terpenoids, Capsaicin Membrane disruption Cichewicz, 1996
essential oils
Alkaloids Berberine Intercalate into cell wall Atta-ur-Rahman et al., 2009
and/or DNA
Piperine
Lectins and Mannose- Block viral fusion or Meyer, 1997
polypeptides specific adsorption
agglutinin
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14
Vigna radiata are small green beans, that belong to the legume family. It is
one of the most popular dish here in the Philippines. They aren’t as popular in the
US but can be purchased from most health food stores as a great source of
different nutrients. One of the studies mentioned that the Mung beans are rich in
vitamins and minerals. One cup (7 ounces or 202 grams) of boiled mung beans
contains: Calories: 212, Fat: 0.8 grams, Protein: 14.2 grams, Carbs: 38.7 grams,
Fiber: 15.4 grams, Folate (B9): 80% of the Reference Daily Intake (RDI),
Manganese: 30% of the RDI, Magnesium: 24% of the RDI, Vitamin B1: 22% of the
RDI, Phosphorus: 20% of the RDI, Iron: 16% of the RDI, Copper: 16% of the RDI,
Potassium: 15% of the RDI, Zinc: 11% of the RDI,Vitamins B2, B3, B5, B6 and
activities. It is believed that Mung beans are a good source of antioxidants, which
may reduce your risk of chronic diseases, such as heart disease, diabetes and
potassium, magnesium and fiber, which have been linked to lower blood pressure
Pharmacologic study displayed that high in folate, iron and protein, all of which
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15
women need more of during pregnancy. Avoid raw mung bean sprouts to pregnant
Mung Bean Vigna radiata has also been proved to have high in fiber and
protein, which can help curb hunger by lowering levels of hunger hormones, such
as ghrelin, and raising fullness hormones, such as peptide YY, GLP-1 and
cholecystokinin. In fact, a review of nine studies found that people felt an average
31% fuller after eating legumes like beans than after eating other staple foods like
pasta and bread. (Swarup, et al, 2018) Animal studies have shown that mung
bean antioxidants may lower “bad” LDL cholesterol, while human studies have
al, 2009) This species has been pronounced that Vigna radiata is not only a good
source of antibacterial activity but also could been an antioxidant and treatment of
cardiovascular disease.
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Chapter 3 16
kg of Munggo beans (Vigna radiata) around Barotac Viejo, Iloilo City. It will be
then be brought to the Department of Agriculture Region VI Iloilo City for the
plant authentication. The samples will undergo drying in an oven, will then be
pulverized by an herbal grinder and then will be decocted and filtered to obtain
the aqueous extract. The prepared extracts will then be freeze dried to obtain the
dried crude extract. The extract will then be screened for its antibacterial activity
using agar well diffusion assay to confirm its bioactivity. It will then undergo
solvent partitioning with hexane and methanol. After which, the antibacterial
acitivity of the subextract will be determined and the most active sub-extract will
of the most active sub-extract will be performed using microbroth dilution assay
and then will be screened for the presence of antibacterial phytochemicals using
antibacterial activity. Prep TLC will then be performed to isolate the bioactive
band for FTIR analysis. For a clearer understanding on the design of this study, a
17
Collection of plant samples
Munggo beans (Vigna radiata)
Plant authentication
Pulverization
Series of Filtration
Freeze-drying
Bioautography
Figure 1. Schematic Diagram
Prep TLC
FTIR analysis
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18
3.2 Sampling Collection and Drying
Barotac Viejo, Iloilo City which will then be authenticated at the Department of
Agriculture-Region 6. The plant sample will then be cleaned and dried using an
The dried Mung beans sample will be pulverized by an herbal grinder and
5 grams of dried powder will be decocted with 100ml of water at 100 oC for about
30 minutes. Until about 50% of the water is lost. After decoction, the extract is will
Nagalingam, 2017).
3.3. Freeze-drying
(Kunal et al., 2015) and will then undergo freeze-drying. The drying is done by
clearing the air with vacuum pump to lower down the pressure to about 10-4 atm
with the temperature of -45 to -20 oC (Kunal et al., 2015). The temperature of the
conduction through the bottom trays radiation from the heat lamp. When the
chamber is already emptied by air, pressure will be below the threshold at which
water can simultaneously exist in a solid, liquid, and gaseous phase (vapour);
commonly known as triple point of water. Once the pressure reaches below this
point, the heat causes the ice crystals trapped in the frozen aqueous extract to
change directly into water vapour. Then vapour is drawn off and condensed,
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19
leaving the freeze-dried aqueous extract behind. (World Journal of Pharmaceutical
Research, 2015)
Method)
In preparing the agar, streak plate method will be used and Mueller Hinton
agar will be used as the medium since it supports the growth of most non-fastidious
4mm. A 150mm plate requires approximately 25ml of medium. When the agar has
aureus and Escherichia coli will be prepared. A loop full of the culture will be
streaked uniformly over the surface of sterile Mueller Hinton Agar (MHA) for S.
aureus and E.coli. With pipette method, 2mg, 5mg, 10mg of freeze dried samples
Tetracycline 10mg/ml will be used as the positive control for the assay. About 25ul
of the crude extracts from freeze-drying will be used to fill holes bored by 6mm
cork borer in the inoculated agar. The plates where made triplicate and incubated
at 37 oC for 18-24 hours and the evaluation for antibacterial activity of the extract
The aqueous extract will undergo solvent partitioning with hexane and
methanol. The dried extract will be suspended in pure methanol and equal volume
the two immiscible liquids will be thoroughly shaken, then allow to stand for several
minutes until a distinct separation line between the solvents is observed. The
methanol fraction will be drained off unto a clean and properly labeled erlenmeyer
flask and the hexane fraction will be poured unto a separate flask.
The exhaustive solvent partitioning will be done until the appearance of the
hexane fraction becomes clear. The polar and non-polar fractions will undergo
in a rotary evaporator and will be further dried using nitrogen gas to obtain dried
subextracts. The dried sub-extracts will be stored at 4°C in air tight containers. (H.
diffusion method
21
The same procedure with 3.4.1. will be done to identify which subextract will
exhibit the antibacterial activity and the bacteria which is most susceptible to that
said subextract. The dried subextracts will be reconstituted with DMSO to obtain a
concentration based on the confirmatory agar well which exhibited the greatest
antibacterial activity. A portion from the stock solution will be transferred onto their
against the most susceptible bacteria will be determined using broth microdilution
method using the 96-well microtiter plate. Exponential phase grown cultures in
agar plates of the test bacterial strains will be prepared by inoculating 2-3 colonies
onto a MHA plate and incubate it for 18-24 hrs at 37 0C. After which, a loop full of
colonies will be inoculated onto a 5 mL MHB medium and the bacterial density will
be determined using a microplate reader at 620 nm. The bacterial density of the
suspension will then be adjusted to 0.0005 OD620nm (1 x 106 cfu). The dried extract
of a 96-well plate. After which, 5 µL of DMSO will be delivered from column 2-9. A
volume of 5 µL of the extract will then be transferred from column 1 to 2 and will
mixed onto the third column and the 2-fold serial dilution procedure will continue
until column 9. Then 5 µL of the mixture in column 9 will be discarded. In the wells
of column 10 and 11, 5 µL of DMSO (negative control) (Gbedema et al., 2010) and
0.0005) will be added and the mixture will be incubated at 37 0C for 18-24 hr. After
incubation, absorbance of the reaction mixture in each well will be determine using
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a microplate reader and percent (%) inhibition will be calculated using the formula
Absnegative - Absextract
Absnegative
High absorbance values suggest growth of the test organisms and low
1980).
used to identify what antibacterial phytochemicals are present in the Mung bean
subextract. TLC plates will be prepared by cutting the plates into 1 inch (width) by
3 inch (height) dimensions. Then lines will be marked by a pencil 1 cm from the
bottom and top of the plate. Bottom line will serve as the marker for the origin spot
and top line will serve as the solvent front height. Then a stock solution of the most
active subextract will be prepared and 10uL will be spotted per plate using a
placed inside the TLC jar and covered. Wait until the solvent reaches the solvent
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front. The separated compounds will then be viewed under UV light at 254 nm and
365 nm. The distance traveled by each band will then be measured and retention
factor (Rf) values of each band will then be calculated using the following formula:
𝐷𝑖𝑠𝑡𝑎𝑛𝑐𝑒 𝑜𝑓 𝑠𝑝𝑜𝑡
𝑅𝑓 =
𝐷𝑖𝑠𝑡𝑎𝑛𝑐𝑒 𝑜𝑓 𝑠𝑜𝑙𝑣𝑒𝑛𝑡
spray reagents (Table 3.5.1) will be used onto the prepared TLC chromatogram of
-Potassium
iodide
2.Iron (III) -Ferric (III) For detection Under visible Blue or greenish http://www/cchem.be
chloride chloride 1g of phenols light, color rkeley.edu/rsgrp/TLC
StainGeneralReferec
-Methanol e.pdf
50mL
-Deionized
water 50mL
using the same solvent system. One chromatogram will serve as reference plate
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and the other chromatogram will be overlayed with a soft agar seeded with the test
bacterial strain to about 1mm thickness and then will be incubated at 37 oC for 18-
24 hours. After incubation period, the TLC plate which was overlayed with a soft
agar will be flooded with rezazurin dye (0.15mg/ml) and will be allowed to stand
for 1-2 hours inside a biosafety cabinet. A visible blue color indicates antibacterial
activity while pink color indicates no antibacterial activity (Choma et. Al,.2010).
3.6.1. Prep TLC procedure (If you are using tlc for bioautography,
same method that we used in the Table 3.5. To detect the active band which
possessed the antibacterial activity, the researchers will compare the retention
researchers will then scrape off the desired band using a surgical blade and the
scraped material will be placed in an Eppendorf’s tube and will be suspended with
500 microliter of pure methanol. After which, the researchers will centrifuge the
sample at 8000rpm for 5 minutes. The supernatant liquid will be separated from
the pellets and will be purged with nitrogen gas to obtain the dried active band
will be used then TLC procedure will then be subjected to FTIR analysis to identify
the functional groups present. Radiation emitted from the source will split into two
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with a big splitter in the interferometer. The fix and moving mirrors will then be
reflect of each of the beam splitter, where the two beams recombine into one and
fall to the detector. Then, the two beams will combine constructively or
destructively varying as the optical path difference, when the moving mirror is
moved combined beam will be transmitted through the sample and will be detected
aldehydes, alkyne, amines, and ester are the functional groups present. Alcohols
have the highest number of waves and Esters have the lowest number of waves
(Visvesshwari M.,2017).
We will dispose the waste materials that generated during the research
by separating Mung bean waste from the materials that will be used in the initial
screening of antibacterial activity. The Mung beans will be placed in the trash bin
disposing materials like dishes in the trash, the bacteria should be destroyed. We
will put or soak a small amount of household bleach over the colonies while
holding the dish over the sink to sterilize. We will use autoclaving to ensure the
sterilization of materials that have been used. Then, seal with a tape and label
biohazard waste. In disposing unused plain agar in plastic plates directly into the
trash can.
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26
Bar graphs with distinctive color and corresponding label will be used to
analyze the results. It will help us to detect and obtain the antibacterial property
of Mung beans (Vigna radiata) using water only as solvent. (Explain the whole
process on how you will do your data analysis. Do not just simply state the
method of analysis but be detailed. Also add the positive results. Example: We
will use bar graphs……which will have a positive result of ______ in the
27
References
Ali, B., Hasan, S. A., Hayat, S., Hayat, Q., Yadav, S., Fariduddin, Q., & Ahmad, A.
Ashbolt, N. J., Amézquita, A., Backhaus, T., Borriello, P., Brandt, K. K., Collignon, P., ...
& Lawrence, J. R. (2013). Human health risk assessment (HHRA) for environmental
Balouiri, M., Sadiki, M., & Ibnsouda, S. K. (2016). Methods for in vitro evaluating
Braithwaite, A., & Smith, J. F. (2012). Chromatographic methods. Springer Science &
Business Media.
Coffmann, C. W., & Garciaj, V. V. (1977). Functional properties and amino acid content of
a protein isolate from mung bean flour. International Journal of Food Science &
Costa, A. R., Batistão, D. W., Ribas, R. M., Sousa, A. M., Pereira, M. O., & Botelho, C. M.
(2013). Staphylococcus aureus virulence factors and disease. Microbial pathogens and
the United States, Canada, Latin America, Europe, and the Western Pacific region for the
Duh, P. D., Du, P. C., & Yen, G. C. (1999). Action of methanolic extract of mung bean
hulls as inhibitors of lipid peroxidation and non-lipid oxidative damage. Food and
Ganesan, K., & Xu, B. (2017). A critical review on phytochemical profile and health
promoting effects of mung bean (Vigna radiata). Food Science and Human Wellness.
Hafidh, R., Abdulamir, A. S., Vern, L. S., Bakar, F. A., Abas, F., Jahanshiri, F., & Sekawi,
Z. (2011). Novel in-vitro antimicrobial activity of Vigna radiata (L.) R. Wilczek against
aureus, and techniques for identifying and quantifying S. aureus adhesins in relation to
Hirsch, B. E. ANTIBIOTICS, THE GUT MICROBIOME & THE REST OF THE BODY.
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COLLEGE OF HEALTH AND ALLIED MEDICAL PROFESSIONS
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1527.
Lambrides, C. J., & Godwin, I. D. (2007). Mungbean. InPulses, sugar and tuber
Murray, M. G., & Thompson, W. F. (1980). Rapid isolation of high molecular weight plant
Paul, T., Mozumder, N. H. M. R., Sayed, M. A., Akhtaruzzaman, M., & Akhtaruzzaman,
protease activity from green gram (Vigna radiata I. Wilczek). Bangladesh res. publication
J, 5, 207-213.
Randhir, R., Lin, Y. T., & Shetty, K. (2004). Stimulation of phenolics, antioxidant and
antimicrobial activities in dark germinated mung bean sprouts in response to peptide and
Root, R. K., Waldvogel, F., Corey, L., & Stamm, W. E. (Eds.). (1999). Clinical infectious
Shaharoona, B., Arshad, M., & Zahir, Z. A. (2006). Effect of plant growth promoting
rhizobacteria containing ACC‐deaminase on maize (Zea mays L.) growth under axenic
bacterium Pseudomonas sp. strain GRP3 influences iron acquisition in mung bean
Sonker, A. S., Richa, J. P., Rajneesh, A. P., Chatterjee, A., & Sinha, R. P.
Tang, D., Dong, Y., Ren, H., Li, L., & He, C. (2014). A review of phytochemistry,
metabolite changes, and medicinal uses of the common food mung bean and its sprouts
343-364
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Zetola, N., Francis, J. S., Nuermberger, E. L., & Bishai, W. R. (2005). Community-
31
Appendix A
SCHEMATIC DIAGRAM
Plant authentication
Pulverization
Series of Filtration
Freeze-drying
Bioautography 32
Appendix B
Prep TLC
GANTT CHART
Figure 1. Schematic Diagram
FTIR analysis
Jun July Aug Sept Oct Nov Dec Jan Feb March
ACTIVITIES Week Week Week Week Week Week Week Week Week Week
3 4 1 2 3 4 1 2 3 4 1 2 3 4 1 2 34 1 2 3 4 1 2 3 4 1 2 3 4 1 2 3 4 1 2 3 4
Preparation of Research
Proposal
Submission of Research
Defense
Revision of Proposal
Manuscript
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Submission of Proposal
Manuscript to Instructor
for Issuance of
Certificate of Completion
Conduct of Research
Preparation of Final 33
Manuscript
Submission of Final
Manuscript to
Instructor/Adviser &
Defense
Submission of
Tarpaulin
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34
Appendix C
BUDGETARY REQUIREMENTS
DETAILS/SERVICES AMOUNT
I. PERSONNEL SERVICES
A. Honoraria
Defense)
35
Appendix D
Flavonoids
Phenols
Amines
36
Appendix E
Educational Background:
37
Educational Background:
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Educational Background:
University of San Agustin
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39
Educational Background:
University of San Agustin
COLLEGE OF HEALTH AND ALLIED MEDICAL PROFESSIONS
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Primary: SPED-ISEC
Educational Background:
41
Educational Background:
42
Educational Background:
Agustin (present)
43
Educational Background: