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Bacteriology Course Plan
Bacteriology Course Plan
Bacteriology Course Plan
Course Specifications
PART 1: COURSE INFORMATION
Third Year, First Term
Course Code: MICR 231
Course Title: BACTERIOLOGY
Units (Lec, Lab): 5 UNITS (3 Units Lec, 2 Units Lab)
Hours/week (Lec, Lab): (3 hours/Week for Lecture and 3 hours/week for Lab)
Pre-requisites: Introduction to Medical Technology (MT 1A); Biochemistry (CHEM 600); Physiology Anatomy (PHYANA)
This is a 5-unit course that deals with the study of the morphology, physiology and pathogenesis of bacteria, rickettsiae and other significant atypical bacteria which are of medical
importance and their role in infection and immunity.
Emphasis on the laboratory diagnosis of clinically significant bacteria employing traditional methods such as isolation utilizing different culture media, bacterial identification using
biochemical tests and antibiotic susceptibility testing. Introduction to new technologies such as molecular techniques will also be discussed. Moreover, emphasis is also placed on proper
specimen collection and handling, pathogenesis & preventive and control measures.
Course Outcomes:
At the end of this course, the students are expected to:
1. Demonstrate an understanding of the important concepts of host-microbe relationships
2. Demonstrate an understanding of the taxonomy, biology, colonial and morphologic features, and pathogenesis of medically important bacteria including mycoplasma and
rickettsia
3. Demonstrate competence in the core areas of diagnostic bacteriology (i.e. taxonomy, method of isolation, identification by phenotypic methods, disease and pathology,
antimicrobial susceptibility methods, prevention and control)
4. Demonstrate competency in practical laboratory techniques for proper specimen collection, isolation and phenotypic identification of clinically relevant bacteria present in
biological samples
5. Utilize the knowledge in the application of prevention, control and treatment strategies of pathogenic and opportunistic bacteria
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Unit
FACULTY OF PHARMACY (1871)
Department of Medical Technology
Thomasian Graduate Attributes (ThoGAs) When you successfully complete a Bachelor’s degree
When you successfully complete Bacteriology, you will be able to:
S.E.A.L. of As a graduate of the Medical Technology you will be able to:
Core
Thomasian
Values University of Santo Tomas,
Education
I am expected to:
-Embrace individual differences and show respect for the Demonstrate an understanding of the taxonomy, biology, colonial
people I engage with daily and morphologic features, and pathogenesis of medically important
bacteria including mycoplasma and rickettsia
- Work productively with individuals or groups from
Effective diverse cultures and demographics Exhibit leadership and collaboration in the Demonstrate competence in the core areas of diagnostic
communicator and performance of laboratory diagnostic work for efficient bacteriology (i.e. taxonomy, method of isolation, identification by
collaborator -Manifest a high sense of emotional maturity as I work health care delivery. phenotypic methods, disease and pathology, antimicrobial
with individuals and groups susceptibility methods, prevention and control)
LAB
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UNIVERSITY OF SANTO TOMAS Academic
Unit
FACULTY OF PHARMACY (1871)
Department of Medical Technology
Demonstrate competency in
practical laboratory techniques for
proper specimen collection,
isolation and phenotypic
identification of clinically relevant
bacteria present in biological
samples (CILO 4)
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UNIVERSITY OF SANTO TOMAS Academic
Unit
FACULTY OF PHARMACY (1871)
Department of Medical Technology
pathogenic and opportunistic 1.2 Pathophysiology and symptomatology • Assigned readings LECTURE
bacteria (CILO5) 1.3 Mode of transmission
1.4 Specimens used for identification • Written Summative Exams (Objective Type)
1.5 Diagnostic techniques for identification • Long Examination (Objective Type)
1.6 Prevention and control • Take-home activities
Demonstrate an understanding of • Case study
the important concepts of host- UNIT VI: Spirochetaceae, Rickettsiaeceae, LECTURE
microbe relationships (CILO1) Mycoplasmataceae, Chlamydiaceae • Integrated lecture
and Miscellaneous bacteria presentation
Demonstrate an understanding of Lecture: • Gapped lectures
the taxonomy, biology, colonial 1. General characteristics
• Assigned readings
and morphologic features, and 1.1 Morphology
pathogenesis of medically 1.2 Pathophysiology and symptomatology
important bacteria including 1.3 Mode of transmission
mycoplasma and rickettsia 1.4 Specimens used for identification
(CILO2) 1.5 Diagnostic techniques for identification
1.6 Prevention and control
Demonstrate competence in the
core areas of diagnostic
bacteriology (i.e. taxonomy,
method of isolation, identification
by phenotypic methods, disease
and pathology, antimicrobial
susceptibility methods,
prevention and control) (CILO3)
Demonstrate competency in
practical laboratory techniques for
proper specimen collection,
isolation and phenotypic
identification of clinically relevant
bacteria present in biological
samples (CILO 4)
Laboratory:
1. Identification of bacteria using clinical
Demonstrate an understanding of specimens, prepared slides and diagnostic techniques LAB
the important concepts of host- • Pre-lab discussion LAB
microbe relationships (CILO1) 2. Laboratory safety • Demonstration of laboratory
3. Proper waste disposal technique/skill • Summative Exam
Demonstrate an understanding of • Use of demonstration slides • Long Exam
the taxonomy, biology, colonial • Use of simulated specimens • Lab Manual Worksheets
and morphologic features, and for analysis
pathogenesis of medically • Practical Examination (ie. return demonstration of technique;)
• Hands-on use of laboratory • Performance Tasks
important bacteria including
apparatus
mycoplasma and rickettsia • Specimen Unknown
(CILO2) • Small group discussion
Moving Practical Exam (i.e. microscopic and/or macroscopic
identification of pointed structures with side questions)
Demonstrate competence in the
core areas of diagnostic
bacteriology (i.e. taxonomy, LECTURE
method of isolation, identification UNIT VII: Overview of Applied Bacteriology LECTURE
by phenotypic methods, disease Lecture: • Integrated lecture • Written Summative Exams (Objective Type)
and pathology, antimicrobial 1. Food bacteriology presentation
• Long Examination (Objective Type)
susceptibility methods, 2. Milk bacteriology • Gapped lectures • Take-home activities
prevention and control) (CILO3) 3. Water bacteriology • Assigned readings
4. Environmental bacteriology • Case study
Demonstrate competency in
practical laboratory techniques for
proper specimen collection, Laboratory: LAB
isolation and phenotypic 1. Bacteriological analysis of: • Pre-lab discussion
identification of clinically relevant 1.1 Water sample • Demonstration of laboratory
bacteria present in biological technique/skill
samples (CILO 4) • Use of demonstration slides
• Use of simulated specimens
Utilize the knowledge in the
for analysis
application of prevention, control
and treatment strategies of • Hands-on use of laboratory
pathogenic and opportunistic apparatus
bacteria (CILO5) • Small group discussion
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FACULTY OF PHARMACY (1871)
Department of Medical Technology
Web References
CDC: http://www.cdc.gov
WHO Website: http://www.who.int
Other Materials
References:
1. Caroll K., Butel J., & Morse S. Jawetz, Melnik & Adelberg’s Medical Microbiology 27thed. New York: McGraw-Hill, Medical c2015.
2. Lever. A. Clinical Microbiology Procedures Handbook 4rd ed. USA: ASM, 2016.
3. Jorgensen J. et al Manual of Clinical Microbiology 11th ed. USA: ASM, 2015
4. Mahon C. Textbook of Diagnostic Microbiology 6th ed. USA: Elsevier, 2018.
5. Mcpherson, R. and Pincus M. Henry’s Clinical Diagnosis and Management by Laboratory Methods 22nd ed. Philadelphia: Elsevier, 2011.
6. National TB Program Manual of Procedures 5th Edition (Dept of Health) c2014
7. Procop G. et al. Koneman’s Color Atlas and Textbook of Diagnostic Microbiology 7th ed. USA: Wolters Kluwer c2016
8. Tille, P. Bailey and Scott’s Diagnostic Microbiology 14th Ed. USA, Elservier c2018
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Unit
FACULTY OF PHARMACY (1871)
Department of Medical Technology
Summative Exam (Quizzes) 40% Summative Exam (Quizzes)
20%
Other Learning Activities (i.e. Takehome activities, Research) 10% Practical Examinations; Specimen Unknown; Performance Tasks;
40%
Comprehensive Long Examination 50 % Laboratory Work Sheets and Peer Evaluation
10%
TOTAL LECTURE COMPONENT 100% Long Examinations
30%
TOTAL LAB COMPONENT 100 %
Part 6: Course Policies
1. ATTENDANCE
CHED & University Requirement:
o On the first day of class, students must present to the assigned faculty member their Registration Forms for verification of enrollment.
Students who fail to present the registration form must present to the faculty concerned as soon as possible. Students who still fail to
present their registration form on the last day of enrollment will not be allowed to attend class.
o Every student is required to attend no less than 80% of the class hours/days required for every course to earn the corresponding
credits.
o To be considered present in lecture or laboratory class, the student must be present throughout the class period.
Translating what is 80% of the total class hours/days ---
L E C T U R E L A B O R A T O R Y
No. of Units Meetings per No. of Absences No. of Units No. of Hours/ Meetings per No. of
Week week Week Absences
3 3 11 2 6 3 11
3 2 7 2 6 2 7
2 2 7 1 3 1 4
o A student who incurs absences in excess of 20% of the required class days shall receive a grade of “FA” and shall not be allowed to take
the final examinations for the course.
o Class attendance should be both regular and punctual.
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Unit
FACULTY OF PHARMACY (1871)
Department of Medical Technology
o A Student is marked:
§ LATE if he/she arrives 15 minutes after the scheduled time.
§ ABSENT if he/she arrives 30 minutes after the scheduled time
§ Three (3) of tardiness of at least 15 minutes shall be counted as one absence.
o As a matter of policy, a student who is habitually late or absent in class is endorsed to the Career and Counselling Office.
2. Policies on Schedule of Activities and Posting of Announcements
• The faculty concerned will announce in advance the important dates to remember (i.e. schedule of long exams, summative exams, submission of
worksheets and other assignments). The announcement can be disseminated through any of the following means:
i. Verbal during laboratory class
ii. Posting on Eleap Course Site
iii. Written notice on the classroom white board
iv. Through the Class President (through email or text message)
• Weekly activities for Laboratory will be posted on the Bacteriology Lab White Board (FLR Lab2). Any changes or updates to the tentative schedule
will also be disseminated through the Class President or through the Eleap Course Site
• The coverage and table of specifications of the Lecture and Laboratory Long Examinations will be posted at the Parasitology Laboratory at least 2
days prior to the scheduled exam. It will also be disseminated via eleap course site or via email.
• In case of class suspensions or interruptions, the concerned faculty member may schedule a make-up class depending on the agreed time and date
between the class concerned.
3. Policies on Summative Exam (Quizzes), Long Exams, Practical Exams and other Activities
LONG EXAMINATION
o The Coverage of Scheduled Long Examinations for Lecture and Laboratory (1st, 2nd and 3rd Shifting) will be from the first topic discussed
in the 1st grading period (i.e. cover to cover).
§ For Lecture: Topics for the Long Examination are based on the Prescribed Textbook
§ For Laboratory: Topics for the Long examination are based on the Prescribed Textbook, Lab Manual and Discussions
§ The total number of points for the long examination will also be indicated in the table of specifications.
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FACULTY OF PHARMACY (1871)
Department of Medical Technology
o Students are periodically given summative exams as a means of assessment for the topics discussed and as for preparation for the long
examinations. The summative exam can be administered as a written test (i.e. identification, true or false, matching type) or via an LCD
projection of the questions.
o Other Learning Activities are also given to supplement Summative Exams. This includes but not limited to the following:
§ Reading Assignments
§ Research Write-ups
§ Group Presentations
§ Case Analysis by Small Group Discussion
§ Course Inquiry Project
o Practical Examinations are given every grading period. This includes but not limited to the following:
§ Moving Practical Exam
• A 40-60 point exam that involves the identification of morphology, colonial characteristics, diagnostic tests, lab
apparatus or reagents used in the course. The exam is administered by stations and the student is given a time limit to
answer the questions in a station.
§ Laboratory Activities
• This includes performance task of lab techniques, return demonstration of lab skills;
• Specimen Unknown (individual, by pair or by group);
• Students are required to indicate the specimen code/number provided by the lab instructor on the result form/lab
report. NO SPECIMEN CODE indicated on the result form/lab report/unknown report = AUTOMATIC ZERO ON THAT
PARTICULAR ACITIVTY
• Erasures/alterations on the lab reports/unknown are not allowed.
o Laboratory Worksheets – are submitted on the last day of the lab class before the major exam
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Department of Medical Technology
`
4. Policies on the Submission of Requirements and Missed Exams
o In case of absence during scheduled summative exam (quiz), or major examinations, a make-up quiz or major exam will be given to the
concerned student provided the student presents a:
§ UST Health Service Validated medical certificate for health related causes; or
§ An excuse letter validated and approved by the Dean’s Office for other causes
NB:
• The schedule of the date and time of the make-up quiz and major exam is upon the discretion of the concerned faculty
member.
• Students who fail to take the make-up quiz on the agreed upon schedule will be given a grade of ZERO.
• In the case of Long Examinations, a student who fails to take the said exam on the agreed schedule will be given an
INCOMPLETE GRADE.
• Students who will miss a Pre-Test will not be given any make-up quiz.
• Late-comers will not be given a special quiz or extended time to finish the quiz.
• In case of missed practical exams due to a justifiable reason, the student is be advised to take it in another section.
• Students who fail to take the practical exam on the agreed schedule will be automatically obtain a grade of ZERO for that
particular practical exam.
o LATE SUBMISSION of Laboratory Sheets or any other assigned activities will NOT BE ACCEPTED and will be given a grade of ZERO.
5. CLASS STANDING, STUDENT ASSESSMENT, ACADEMIC HONESTY and FINAL GRADE
a. On the first meeting, the faculty member will discuss the grading system, course policies and requirements.
b. E-copies of the Course Plan will be uploaded on the Eleap Website or Emailed through the Class President
c. Concerned Faculty members will return the results of quizzes, major exams or other assigned activities within a reasonable time.
d. Students caught cheating during long examinations, practical examinations, quizzes or any other similar assessment will automatically be
given a ZERO MARK for that particular activity. Students who are caught cheating will be also endorsed to the SWDB Coordinator. The same
policy will also be applied to students who allowed to be cheated on (PPS 1017 of the Student Handbook)
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Department of Medical Technology
e. Concerns and questions on the results of the tests, assignments and class standing must be directed on the assigned faculty member.
f. Requests for grade/course consultation with students are to be scheduled ahead of time. Parents or guardians who are requesting for a
conference or dialogue should write a letter addressed to the Dean for approval. The conference/dialogue should be done in the presence of
the Department Chair.
g. Request for Manual Checking of Scantron Papers and ZIPGRADE or any similar type used for Major Examinations and Quizzes will not be
granted.
h. Unauthorized Alterations on corrected test papers, activity sheets or any similar material will be dealt accordingly following University Wide
and College wide Policies on Cheating.
i. REQUESTS FOR “SPECIAL PROJECTS”, “REMOVAL EXAM”, OR ANY OTHER SIMILAR ACTIVITIES WILL NOT BE GRANTED.
j. The computation for the final grade is based on the course assessment stipulated in this course plan.
k. GRADES POSTED ON THE MYUSTE STUDENT PORTAL ARE FINAL and cannot be altered unless:
i. There is error in encoding of grades; and/or
ii. Error in the computation
6. For other Policies and Guidelines on Attendance, and other University-wide Policies, please refer to PPS 1010 p. 71 of the Student
Handbook
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UNIT I: Introduction to Diagnostic Bacteriology
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8 Unit IV Facultative Anaerobe and Aerobic Bacilli (Enterobacteriacae) Vibrio and related organisms, Non-fermenting bacilli, Branching and Non-branching bacilli;
Bacillus)
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11 Unit IV Facultative Anaerobe and Aerobic Bacilli (Vibrio and related organisms, Non-fermenting bacilli, Branching and Non-branching bacilli; Bacillus)
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Asst. Prof. Carmelita C. Cardona, MSc Ms. Michelle Bartolome-Dalisay MSc Assoc. Prof. Edilberto P. Manahan, PhD Prof. Aleth Therese Dacanay, PhD
Mr. Alvin Rey Flores, MPH, MT(ASCP) Library Coordinator Department Chair Dean