Professional Documents
Culture Documents
Genetic Deteriminat of Asthma Acute Therapy in Children
Genetic Deteriminat of Asthma Acute Therapy in Children
DOI: 10.1002/ppul.24247
Correspondence
Sze Man Tse, Division of Respiratory Medicine,
Abstract
Department of Pediatrics, Sainte-Justine Background: We documented inter-individual variability in the response to acute
University Hospital Center and University of
asthma therapy in children, attributed in part to five clinical factors (oxygen
Montreal, 3175 chemin de la Côte-Sainte-
Catherine, Montréal H3T 1C5, Quebec, Canada. saturation, asthma severity score, virus detection, fever, symptoms between
Email: sze.man.tse@umontreal.ca
exacerbations; DOORWAY study). The contribution of genetic determinants of
Funding information failure of acute asthma management have not been elucidated.
Canadian Institutes of Health Research,
Objective: We aim to determine single nucleotide polymorphisms (SNP) associated
Grant number: 102547
with emergency department (ED) management failure in children.
Methods: A prospective cohort of 591 Caucasian children aged 1-17 years with
moderate-to-severe asthma managed with standardized protocol were included. We
examined 53 SNPs previously associated with asthma development, phenotypes, or
bronchodilator or corticosteroids response. Associations between SNPs and
management failure (hospitalization, active asthma management ≥8 h in ED, or a
return visit within 72 h for one of two previous criteria) were examined using logistic
regression, adjusting for the five clinical predictors of management failure.
Results: Four-hundred ninety-one subjects had complete clinical data and usable
DNA samples. While controlling for clinical determinants, rs295137 in SPATS2L
(OR = 1.77, 95%CI: 1.17, 2.68) was significantly associated with increased odds of ED
management failure. Two SNPs in IL33 were associated with decreased odds of ED
management failure: rs7037276 (OR = 0.55, 95%CI: 0.33, 0.90), and rs1342326
(OR = 0.52, 95%CI: 0.32, 0.86). The addition of these three SNPs to the clinical
predictors significantly improved the model's predictive performance (P < 0.0004).
Conclusion: Three SNPs were significantly associated with ED management failure
in addition to clinical predictors, contributing to inter-individual variability. None
has been previously associated with treatment response to acute asthma
management.
KEYWORDS
bronchodilator, emergency department, oral corticosteroids, pharmacogenetics, treatment
response
provocation test. Between February 2011 and December 2013, adjusting for the five significant clinical determinants of ED failure
children were invited to participate in the study if they presented to (symptoms between episodes of asthma exacerbations, high PRAM
the ED with a moderate or severe asthma exacerbation, defined as score, oxygen saturation <92% upon ED presentation, fever, and viral
wheeze, cough, or dyspnea, and a PRAM score of >3.17 The PRAM is detection for 23 common respiratory viruses during the acute
a 12-point (0 best, 12 worst) validated clinical measure of asthma exacerbation13) and study site. We used an additive genetic model
exacerbation severity based on oxygen saturation, suprasternal for all SNPs. SNPs with a P-value <0.1 on the initial logistic regression
retractions, air entry, wheezing, and scalene retraction in children were included in a final backward multivariate stepwise logistic
1-17 years.17 For the current study, we restricted the analyses to the regression, adjusting for the clinical determinants, and study site. Given
Caucasian children, given the potential issue of population stratifi- that no study previously reported on the genetic association with acute
cation in genetic analyses (ie, the systematic difference in allele asthma management outcome, we chose a stepwise regression
frequencies between subpopulations of different ancestries), and to approach to select the SNPs that account the most for the outcome.
those with data on the five clinical variables found to be associated SNPs were considered to be significantly associated with ED
with ED management failure. management failure if they have a nominal P-value of <0.05 in the
final model. Several methods were used to assess the validity and
robustness of our findings: (i) the goodness of fit of the model including
2.3 | Acute treatment protocol
genetic and clinical determinants was evaluated using the Hosmer-
All subjects were treated according to a standardized severity-specific Lemeshow test; (ii) the final model was validated using bootstrapping
6
protocol, as per pediatric international guidelines. This included methods with 10,000 bootstrap replicates; and (iii) given the possibility
2 mg/kg (maximum 50 mg) of oral prednisolone or prednisone within of misclassification of asthma diagnosis in preschool-aged children, a
60 min of triage, and inhaled salbutamol with or without concomitant post hoc subgroup analysis of the final model was performed in
inhaled ipratropium bromide depending on the asthma severity children aged 6 years and older. Although the SNPs were identified a
(Supplementary Table S1). priori, we conservatively applied the Benjamini-Hochberg false
discovery rate (FDR) method to account for multiple testing in a
sensitivity analysis.
2.4 | Assessment of ED management failure
A post hoc joint analysis of the three SNPs in the final model was
The primary outcome was failure of ED management, defined as: (i) an performed using a genetic score, defined as the number of risk alleles
asthma-related hospitalization; (ii) an ED stay for active management (ie, alleles that conferred a risk of ED management failure). If a minor
of asthma ≥8 h after OCS intake; or (iii) a return visit within 72 h, allele was protective of the outcome, the major allele was considered
meeting one of the two previous criteria. While the need for hospital the risk allele. The effect of the genetic score on ED management
5,6
admission is influenced by multiple factors, such as response to failure was evaluated using logistic regression, adjusting for the same
pharmacotherapy, parental anxiety and fatigue, and availability of clinical variables and study site. Finally, receiver operating character-
hospital beds, we created this composite outcome because of its high istic curves were fitted for both models. The area under the curves
clinical relevance for physicians and its impact on families. (AUC) of the two models were compared using DeLong's test.20
Analyses were performed in R (version 3.2.1, www.r-project.org).
2.5 | Genotyping
DNA was extracted from saliva collected through expectoration or 3 | RESULTS
16
buccal swabs. Based on a literature review at the time of the study
design in 2009 and an updated review in 2015, we selected 53 Of the 591 Caucasian subjects enrolled, 491 (83.1%) were included
candidate SNPs in 40 genes that have been previously associated and had complete clinical information and usable DNA samples
with asthma development or phenotypes, or responses to inhaled (Supplementary Figure S1 for flow of patients). The characteristics of
corticosteroids or bronchodilators (Supplementary Table S2). These the 491 Caucasians participating in this analysis were similar to the 100
SNPs were genotyped using Sequenom genotyping platform at the subjects who were not analyzed (Supplementary Table S3). Among
McGill University and Génome Quebec Innovation Center or by participants, most (73.7%) were preschoolers (<6 years of age), male
allele-specific oligonucleotides hybridization as described previ- (64.6%), had episodic asthma (77.0%), and a virus detected (61.3%)
18 19
ously. GSTM1 null allele was detected by gel electrophoresis. All (Table 1). The median PRAM score was 6, consistent with a moderate
SNPs had a completion rate of ≥90% and a minor allele frequency asthma exacerbation. Failure of ED management occurred in 89
(MAF) of >0.05. (18.1%) children.
We evaluated the association between each of the 53 SNPs and ED The initial multivariate analyses, each including one of the 53 candidate
management failure using multivariate logistic regression, while SNPs in a model while adjusting for the five aforementioned clinical
4 | TSE ET AL.
TABLE 1 Baseline characteristics of the 491 Caucasians in determinants of ED management failure and study site, revealed five
DOORWAY included in this analysis SNPs with a P-value <0.10 (Table S-2). Following the stepwise
Characteristics n = 491 regression of these five SNPs, three SNPs were included in the final
Age in years, mean (SD) 4.4 (3.8) multivariate model with a P-value <0.05 (Table 2), along with the
Age categories, n (%) clinical predictors of ED management failure and site. Rs295137 in the
TABLE 2 Final model describing the genetic and clinical predictors of ED management failure, compared to original model including clinical
predictors only
Genetic and clinical model Original clinical model
CI = confidence interval; ED = emergency department; OR = Odds ratio; PRAM = pediatric respiratory assessment measure.
a
Adjusted odds ratio derived from the multivariate stepwise logistic regression model including all 5 original clinical variables and three SNPs, adjusting for
study site.
b
Adjusted odds ratio for the original model including all 5 clinical variables, adjusting for study site.
TSE ET AL..
| 5
failure. Previous studies have not yet reported on the role of IL33 in management failure. While the combined genetic and clinical model
response to asthma therapy; however, its central role in inflamma- was statistically better than the clinical model, the difference in the
tion in patients with allergic diseases21,22 is consistent with our AUC between the two models was modest and its clinical
findings. In a longitudinal study of over 2000 children, rs7037276 significance is unclear. Thus, the combined model needs to be
and rs1342326 have also been associated with intermediate-onset tested in a separate cohort of patients in order to determine its
23
asthma and persistent asthma, respectively. Recently, a loss-of- sensitivity and specificity.
function mutation in IL33 was discovered, which was associated with Interestingly, the addition of the genetic determinants did not
decreased blood eosinophils and protected against asthma.24 In fact, alter the statistical association between four of the five clinical
given the importance of IL33 in atopic conditions, it is currently predictors of ED management outcome, and while the persistence of
being investigated as a therapeutic target in the treatment of atopic asthma symptoms was no longer a statistically significant predictor
diseases.25 Clearly, the functional effect of these SNPs remains to upon the inclusion of genetic determinants, its effect size remained
established to provide better insight in the role of these similar. A complimentary analysis showed no significant association
polymorphisms in the inflammatory cascade. Our observation that between the three candidate SNPs and the clinical variables (data
IL33 polymorphisms modulates asthma treatment response is novel not shown). Thus, these findings supports the independent effect of
and lends support to ongoing study efforts to clarify its role. the three candidate SNPs and the measured clinical determinants on
Only one previous genome-wide association study has identified the outcome.
an association between rs295137 in SPATS2L and bronchodilator There are noteworthy strengths and limitations to our study.
26
response (BDR). In contrast to our findings, in non-Hispanic white First, the addition of genetic determinants to previously estab-
subjects, the TT genotype was associated with increased BDR with a lished key clinical predictors not only enabled the identification of
median of 16% increase in forced expiratory volume in 1 s compared the independent contribution of genetic factors, but also more
to 11% for the CC or CT genotypes. Functional work involving accurate quantification of their effect on the treatment response.
knockdown of the SPATS2L mRNA resulted in increased β2- Indeed, prior genetic studies have seldom controlled for concomi-
adrenergic receptor protein levels, but little remains known about tant clinical factors in their statistical model, even though the
the biological role of SPATS2L. Interestingly, our results demonstrate combination of clinical and genetic factors should reflect more
that the minor allele T was associated with increased odds of ED closely the anticipated host-environment interaction occurring in
management failure. Several differences in study design could real-life. Second, our study included a wide age range of children
account for the seemingly discrepant results. First, our population with asthma, maximizing the generalizability of our findings to
was purely pediatric while the previous study included mostly adult different age groups. However, we acknowledge the potential for
patients. Because the clinically important threshold for BDR in misclassification given that diagnosing asthma in preschool-aged
27,28
children may be lower than the traditionally used 12%, the children may sometimes be difficult. In our subgroup analysis of
difference in BDR between the genotypes may not be as clinically children aged 6 years and older, we found similar effect sizes of the
important in children. Second, we assessed an outcome that reflects three identified SNPs on ED management failure. This suggests
response to both bronchodilators and systemic corticosteroids, that misclassification was likely minimal, supporting the robustness
26
while assessed an isolated response to bronchodilator in the non- of our original findings. Third, we used a clinically important
acute setting. Thus, while SPATS2L seems to play a role in asthma composite outcome of ED management outcome. However, given
management response, more studies are warranted to replicate our the nature of the outcome, we were unable to distinguish whether
findings. Collectively, these findings suggests that SPATS2L is the SNPs modulate the pharmacological response to acute therapy
associated with response to bronchodilators, perhaps in the (bronchodilator, anticholinergics, systemic corticosteroids) or
presence of oral corticosteroids during acute pediatric asthma whether they influence ED management outcome via an unmea-
exacerbations. sured clinical parameter. While the composite outcome of ED
In our population, the odds of ED management failure was management failure is novel in genetic studies and does not allow
positively associated with the number of risk alleles in these three for the exploration of specific biologic pathways, it is a pragmatic
significant SNPs. Most genetic studies in asthma have focused on the outcome associated with substantial health burden and a direct
individual effect of a SNP on asthma-related outcomes.29–31 However, impact on children, their families, and the health care system.
the effect size of individual SNPs is often small and thus very large Fourth, while we restricted our study population to Caucasians and
sample sizes are required to detect such effect. Our findings support our findings may not be generalizable to other ethnicities, we
the value of simultaneously exploring the effect of several risk alleles in nonetheless had a large cohort of well-phenotyped children.
prediction models, as this approach provided evidence that individual Furthermore, the selection of children with moderate-to-severe
SNPs make additive contributions to the risk of ED management asthma and use of standardized severity-specific treatment
failure. protocol across the participating sites minimized treatment
We evaluated whether a predictive model that includes genetic heterogeneity. Finally, although we had a priori specified the 53
polymorphisms in addition to clinical variables would perform better SNPs for our analysis, we acknowledge that this list may not be
than one that includes only clinical factors at predicting ED exhaustive and that our results may be limited by multiple testing.
TSE ET AL..
| 7
Thus, we suggest that these findings be considered as hypothesis- 5. Ortiz-Alvarez O, Mikrogianakis A. Canadian Paediatric Society ACC.
generating and we call for additional studies to confirm our Managing the paediatric patient with an acute asthma exacerbation.
Paediatr Child Health. 2012;17:251–262.
observations.
6. Global Initiative for Asthma. Global Strategy for Asthma Management
In conclusion, we identified one SNP in SPATS2L and two and Prevention (2018 update). 2018.
SNPs in IL33 that are associated with significantly higher and 7. Rowe BH, Spooner C, Ducharme FM, Bretzlaff JA, Bota GW. Early
lower odds of ED management failure in children presenting with emergency department treatment of acute asthma with systemic
corticosteroids. Cochrane Database Syst Rev. 2001;CD002178.
a moderate-to-severe asthma exacerbation, respectively. While 8. Bhogal SK, McGillivray D, Bourbeau J, Benedetti A, Bartlett S,
the exact roles of these SNPs need to be validated in prospective Ducharme FM. Early administration of systemic corticosteroids
or functional studies, our findings would support their role in the reduces hospital admission rates for children with moderate and
modulation of treatment response to acute care in children with severe asthma exacerbation. Ann Emerg Med. 2012;60:84–91e3.
9. Lougheed MD, Garvey N, Chapman KR, et al. Variations and gaps in
asthma. management of acute asthma in Ontario emergency departments.
Chest. 2009;135:724–736.
10. Lougheed MD, Garvey N, Chapman KR, et al. The Ontario Asthma
ACKNOWLEDGMENTS Regional Variation Study: emergency department visit rates and the
relation to hospitalization rates. Chest. 2006;129:909–917.
This project (#210272) was funded by a grant awarded through a 11. Buyuktiryaki AB, Civelek E, Can D, et al. Predicting hospitalization in
peer-review process by the Canadian Institutes of Health Research, children with acute asthma. J Emerg Med. 2013;44:919–927.
Canada under the title “Determinants Of Oral corticosteroid 12. Panickar J, Lakhanpaul M, Lambert PC, et al. Oral prednisolone for
preschool children with acute virus-induced wheezing. N Engl J Med.
Responsiveness in Wheezing Asthmatic Youth (DOORWAY).” We
2009;360:329–338.
acknowledge the support of the Fonds de la Recherche en Santé du 13. Ducharme FM, Zemek R, Chauhan BF, et al. Factors associated with
Québec for the infrastructure support provided to the Research failure of emergency department management in children with acute
Institutes of the Centre Hospitalier Universitaire Sainte-Justine moderate or severe asthma: a prospective, multicentre, cohort study.
Lancet Respir Med. 2016;4:990–998.
(CHUSJ), the McGill University Health Centre (MUHC), and the
14. Tse SM, Tantisira K, Weiss ST. The pharmacogenetics and pharmaco-
Centre Hospitalier Universitaire de Laval (CHUL). Additional genomics of asthma therapy. Pharmacogenomics J. 2011;11:383–392.
funding to complete the genetic analysis was provided by the 15. Davis JS, Weiss ST, Tantisira KG. Asthma pharmacogenomics: 2015
Academic Chair in Clinical Research and Knowledge Transfer in update. Curr Allergy Asthma Rep. 2015;15:42.
16. Ducharme FM, Zemek R, Gravel J, et al. Determinants Of Oral
Paediatric Asthma. We thank parents of children enrolled in this corticosteroid Responsiveness in Wheezing Asthmatic Youth (DOOR-
study, Marica Reise-Filteau and Vincent Gagné for DNA extraction WAY): protocol for a prospective multicentre cohort study of children
and genotyping, and Génome Québec for their genotyping with acute moderate-to-severe asthma exacerbations. BMJ Open.
services. This project is funded by a grant awarded through a 2014;4:e004699.
17. Ducharme FM, Chalut D, Plotnick L, et al. The Pediatric Respiratory
peer-review process by the Canadian Institutes of Health Research
Assessment Measure: a valid clinical score for assessing acute asthma
(Fund #102547). severity from toddlers to teenagers. J Pediatr. 2008;152:476–480, 480 e1.
18. Bourgeois S, Labuda D. Dynamic allele-specific oligonucleotide
hybridization on solid support. Anal Biochem. 2004;324:309–311.
CONFLICTS OF INTEREST 19. Zhong S, Wyllie AH, Barnes D, Wolf CR, Spurr NK. Relationship
between the GSTM1 genetic polymorphism and susceptibility to
The authors have no conflicts of interest to declare. bladder, breast and colon cancer. Carcinogenesis 1993;14:1821–1824.
20. DeLong ER, DeLong DM, Clarke-Pearson DL. Comparing the areas
under two or more correlated receiver operating characteristic curves:
ORCID a nonparametric approach. Biometrics. 1988;44:837–845.
21. Chu DK, Llop-Guevara A, Walker TD, et al. IL-33, but not thymic
Sze Man Tse http://orcid.org/0000-0002-0295-0064 stromal lymphopoietin or IL-25, is central to mite and peanut allergic
sensitization. J Allergy Clin Immunol. 2013;131:187–200, e1-8.
22. Porsbjerg C, Baines K, Gibson P, et al. IL-33 is related to innate immune
activation and sensitization to HDM in mild steroid-free asthma. Clin
REFERENCES Exp Allergy. 2016;46:564–574.
23. Savenije OE, Mahachie John JM, Granell R, et al. Association of IL33-
1. Global Asthma Network. 2017 July 4. The Global Asthma Report
IL-1 receptor-like 1 (IL1RL1) pathway polymorphisms with wheezing
2014. Available at: http://www.globalasthmareport.org/burden/
phenotypes and asthma in childhood. J Allergy Clin Immunol.
burden.php. Accessed 2017 July 4.
2014;134:170–177.
2. Moorman JE, Akinbami LJ, Bailey CM, Zahran HS, King ME, Johnson
24. Smith D, Helgason H, Sulem P, et al. A rare IL33 loss-of-function
CA, Liu X. National surveillance of asthma: United States, 2001-2010.
mutation reduces blood eosinophil counts and protects from asthma.
Vital Health Stat 3. 2012;1–67.
PLoS Genet. 2017;13:e1006659.
3. Statistics Canada. 2014 September 9. Asthma, by age group and sex
25. June 20. Placebo-Controlled Study to Investigate ANB020 Activity in
Statistics Canada. Available at: http://www.statcan.gc.ca/tables-
Adult Patients With Peanut Allergy. Available at: https://clinicaltrials.
tableaux/sum-som/l01/cst01/health49b-eng.htm. Accessed 2014
gov/ct2/show/NCT02920021. Accessed 2017 June 20.
September 9.
26. Himes BE, Jiang X, Hu R, et al. Genome-wide association analysis in
4. Kamble S, Bharmal M. Incremental direct expenditure of treating
asthma subjects identifies SPATS2L as a novel bronchodilator response
asthma in the United States. J Asthma. 2009;46:73–80.
gene. PLoS Genet. 2012;8:e1002824.
8 | TSE ET AL.
27. Tse SM, Gold DR, Sordillo JE, et al. Diagnostic accuracy of the SUPPORTING INFORMATION
bronchodilator response in children. J Allergy Clin Immunol.
2013;132:554–559 e5. Additional supporting information may be found online in the
28. Dundas I, Chan EY, Bridge PD, McKenzie SA. Diagnostic accuracy of Supporting Information section at the end of the article.
bronchodilator responsiveness in wheezy children. Thorax.
2005;60:13–16.
29. Vonk JM, Nieuwenhuis MAE, Dijk FN, et al. Novel genes and insights in
complete asthma remission: a genome-wide association study on
clinical and complete asthma remission. Clin Exp Allergy. How to cite this article: Tse SM, Krajinovic M, Chauhan BF,
2018;48:1286–1296. et al. Genetic determinants of acute asthma therapy
30. Sarnowski C, Sugier PE, Granell R, et al. Identification of a new locus at response in children with moderate-to-severe asthma
16q12 associated with time to asthma onset. J Allergy Clin Immunol.
exacerbations. Pediatric Pulmonology. 2019;1–8.
2016;138:1071–1080.
31. Moffatt MF, Gut IG, Demenais F, et al. A large-scale, consortium-based https://doi.org/10.1002/ppul.24247
genomewide association study of asthma. N Engl J Med.
2010;363:1211–1221.