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Lecture 1-Introduction To Biology Biological Unity Underlies Biological Diversity PDF
Lecture 1-Introduction To Biology Biological Unity Underlies Biological Diversity PDF
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Essential Questions
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If the work of many scientists has shown
that spontaneous generation does not
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occur, and the idea of biogenesis is true,
how do we explain the origin of the first
living things?
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How did life begin on Earth?
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Remember...
According to the cell theory,
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life only comes from life, new
cells only come from pre-
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existing cells. This is called
biogenesis.
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If this is true, then how did
life on Earth first begin?
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How did life begin?
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Hydrothermal Vents Electric Spark
These vents release important Can generate amino acids
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hydrogen-rich molecules and sugars from an
Mineral catalysts could have atmosphere loaded with
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made critical reactions occurs water, methane, ammonia
faster
Discover of Archaea bacteria and hydrogen
may be evidence of this Demonstrated in the famous
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Miller-Urey experiment
reported in 1953
New evidence suggest
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occurred in volcanic
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clouds
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How did life begin?
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Panspermia
Life could have come from outer Community Clay
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space in a comet or meteorite.
Clay may have provided the
foundation for first organic
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compounds.
Mineral crystals in clay could
have arranged organic
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compounds into organized
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Ice Earth
3 billion years ago ice might
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have covered the oceans.
Protected from UV light,
organic compounds may have
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The Earth was formed
about 4.5 billion years
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ago.
The oldest fossils of
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microorganisms are
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about 3.5 billion years
old.
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come from???
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Theories - Disproving Spontaneous Generation
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Francisco Redi (1668) – Rotten Meat Experiment
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Italian physician Francesco Redi (1626–1697), performed an
experiment in 1668 that was one of the first to refute the idea
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that maggots (the larvae of flies) spontaneously generate on meat
left out in the open air.
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He predicted that preventing flies from having direct contact with
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the meat would also prevent the appearance of maggots. Redi left
meat in each of the three containers. One was open to the air,
One was covered with gauze, and One was tightly sealed. His
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hypothesis was supported when maggots developed in the
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uncovered jar, but no maggots appeared in either the gauze-
covered or the tightly sealed jar.
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He concluded that maggots could only form when flies were
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allowed to lay eggs on the meat, and that the maggots were the
offspring of flies, not the product of spontaneous generation.
Theories – Disproving Spontaneous Generation from
non-living matter
Louis Pasteur (1864) – Curved Flask/Swan neck Experiment
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Pasteur made a series of flasks with long, twisted necks (“swan-
neck” flasks), in which he boiled broth to sterilize it. His design
allowed air inside the flasks to be exchanged with air from the
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outside, but prevented the introduction of any airborne
microorganisms, which would get caught in the twists and bends
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of the flasks’ necks.
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If a life force besides the airborne microorganisms were
responsible for microbial growth within the sterilized flasks, it
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would have access to the broth, whereas the microorganisms
would not. He correctly predicted that sterilized broth in his
swan-neck flasks would remain sterile as long as the swan necks
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remained intact. However, should the necks be broken,
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Conditions on the early Earth were very
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different from the Earth we know today.
The early atmosphere contained no free
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oxygen and probably contained hydrogen
cyanide, carbon dioxide, carbon monoxide,
nitrogen, hydrogen sulfide and water.
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Energy for chemical reactions between
these gases could come from electric
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discharge in storms or solar energy (no
ozone layer).
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Could organic molecules have evolved
under these conditions?
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Theories - Chemical Evolution
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Mixture of gases
simulating primitive Water Vapor Ammonia
H2O NH3
atmosphere of early Methane
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Hydrogen
Alexander Oparin Earth CH4 H2
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simulating
lightning
form. storms
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and Stanley Miller tried to chamber, it
condenses the
answer that question by Stopcock gas causing
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simulating the conditions
for taking
samples
droplets to form
(Rain).
on the early Earth in a Liquid
laboratory setting. containing
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Water Amino Acids
vapor (15) and other
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organic
compounds
Miller-Urey Experiment
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• First flask partially filled with water and heated to produce
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water vapor (sea)
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• Water vapor was moved to a second flask where methane
and ammonia vapor was added (atmosphere)
• Electric sparks (lightening) in second flask was energy
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source for chemical reactions
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• Below second flask, water vapor cooled (rain) and recycled
to first flask (sea)
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• Result: turned brown with amino acids and other complex
organic molecules
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Miller and Urey did not create life from non-
life (like the idea of maggots coming from
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meat). They simply created the ingredients
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for life (organic molecules), from inorganic
molecules.
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Scientists believe that we do not see this
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process occur in nature today because
present day conditions on Earth are so
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early Earth
Theories - Chemical Evolution
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Miller and Urey's experiments suggested how
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mixtures of the organic compounds necessary
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for life could have arisen from simpler
compounds present on a primitive Earth.
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This formation of organic
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molecules (such as amino
acids, sugars, fatty acids, and
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nucleotide bases ) from
inorganic molecules is also
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known as abiogenesis.
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• Why were scientists trying to synthesize basic
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organic compounds in a simulated primitive
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Earth’s atmosphere?
• Because basic amino acids are the building
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blocks of all Life on Earth. It gives evidence
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that living things could have started on Earth
from these simple molecules.
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The First Cells
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Geological evidence suggests that
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cells similar to modern bacteria were
common 3.8 billion years ago.
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However the stew of organic
molecules suggested by Miller and
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Urey is a long way from a living cell.
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So how could the first cells
on Earth have originated?
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Organic molecules have a tendency to aggregate.
Remember…
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Phospholipids form lipid
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bilayers when they are
surrounded by water.
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As a result, membrane-like
vesicles called coacervates,
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conditions.
Coacervates
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Coacervates are made mostly of
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aggregated lipids.
They grow by adding new polymers.
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They form a semi-permeable
membrane.
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When they get too big they divide.
Hypotheses suggest that structures
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similar to microspheres might have
acquired more characteristics of
living cells.
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The Origin of Heredity
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Remember…
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One of the characteristics of
life, is that all living things
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contain hereditary information
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(DNA) which is passed from
cell to cell during cell division.
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Scientists speculate that RNA may actually have
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been the first hereditary molecule.
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• First cells were anaerobic, heterotrophic,
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prokaryotes
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• Diversification led to different forms of cells.
• Primitive photosynthesis evolved and added
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free oxygen to the environment.
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• Oxygen in the atmosphere killed off most
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cells. Survivors were aerobes.
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The First Eukaryotic Cells
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The Endosymbiotic Theory, proposed by Lynn Margulis in
1967, proposes that eukaryotic cells arose from living communities
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formed by prokaryotic organisms. According to the theory,
eukaryotic cells formed from a symbiosis among several different
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prokaryotes.
Plants and
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Aerobic plantlike
bacteria Photosynthetic protists
Nuclear bacteria
envelope
evolving
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Mitochondrion
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Primitive Photosynthetic
Eukaryote
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• Chloroplasts and mitochondria …
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– are approximately the same size as bacteria
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– divide independently of the cell.
– have a double membrane.
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– have DNA that is different from that in the cell’s
nucleus
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What’s important
• Chemical Evolution – the early Earth was very different from today. It
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had certain toxic gases and water vapor in the atmosphere and was
highly charged with energy. These conditions allowed the formation
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of organic molecules from inorganic molecules. (Miller-Urey
experiment)
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• Once organic molecules appeared (in the primordial soup), they
reacted together to form bigger organic molecules, then more
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sophisticated cell-like structures that metabolized materials and even
divided in two. Once genetic material entered these structures, they
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actually began to pass on their genetic material when they divided.
Now these structures had all of the characteristics of life and where
the first living things (primitive bacteria-like cells - prokaryotic).
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• Endosymbiotic theory: Some of these cells engulfed other cells. The
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smaller cells started to live in the bigger cells. After many millions of
years of this co-existance, they became, a single, more complex cell
(eukaryotes)
Search for Self-Replicating Molecule
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• Work backward from organisms that live today
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• DNA is double-stranded = complicated
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• RNA obvious candidate, more simple than
DNA
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– Hereditary information
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– Can serve as template for replication
– Fewer steps to produce backbone structure
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Search for Self-Replicating Molecule
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• Problem: RNA and DNA require enzymes to
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replicate
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• In 1980’s determined that RNA might catalyze
their own replication instead of other
enzymes
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• Early Earth was an RNA-world
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Search for Replicating Molecule
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• On Early Earth, short strands of RNA-like molecules
were produced spontaneously partially or completely
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• RNA-like molecules that could replicate faster with
less errors soon dominated population
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• Copying errors introduced mutations, ensuring the
production of many variations of successful
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molecules
• Allowed molecular evolution to continue
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• RNA-world gave way to DNA-world
– DNA less prone to copying errors
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The Unity and Diversity of Living Things
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An Evolutionary Tree of Life
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The Three Domains of Life Represent the Earliest
Branches in Evolutionary History
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Contains
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kingdoms
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Living Fossils
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• Bacteria and Archaea: genetic material NOT separated from
rest of cell
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• Eukarya: DNA separated from rest of cell by membrane
• Extremophiles (live near deep-sea vents or in hot springs)
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closest to root of tree of life
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Classification of living organisms
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1. Bacteria: These are a group of unicellular, prokaryotic microorganisms that
are present in every habitat on earth. They are usually a few micrometers in
length and have a range of shapes such as rods, spheres, and spirals. Bacteria
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are one of the most ancient life forms, believed to have been present over 3
billion years ago. These organisms lack a defined cell-nucleus and other
cellular organelles, due to which they are classified as prokaryotes.
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2. Archae: Archae are a group of single-celled microorganisms that are also
classified as prokaryotes due to their lack of cellular organelles and a nucleus.
They were originally classified as bacteria but now form their own separate
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domain due to several genetic and metabolic differences, in which they more
closely resemble eukaryotes. Unlike eukaryotes however, they are capable of
obtaining their energy from various sources such as organic compounds,
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sugars, ammonia etc.
3. Eukaryotes: These are multicellular organisms whose cells contain complex
structures including a well-defined, membrane-bound nucleus carrying the
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genetic material. Eukaryotic cells are typically larger than prokaryotes and
contain several other membrane-bound organelles which carry out complex
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Life on the edge
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• Definition - Lover of extremes
• History
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– Suspected about 30 years ago
– Known and studied for about 20 years
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• Temperature extremes
– boiling or freezing, 1000C to -10C (212F to 30F)
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• Chemical extremes
– vinegar or ammonia (<5 pH or >9 pH)
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– highly salty, up to ten times sea water
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Extreme Temperatures
• Thermophiles - High temperature
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– Thermal vents and hot springs
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– May go hand in hand with chemical extremes
• Psychrophiles - Low temperature
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– Arctic and Antarctic
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• 1/2 of Earth’s surface is oceans between 10C & 40C
• Deep sea –10C to 40C
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• Most rely on photosynthesis
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Thermophiles
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Yellowstone National
Park
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Hydrothermal Vents
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Psychrophiles
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Chemical Extremes
• Acidophiles - Acidic
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– Again thermal vents and some hot springs
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• Alkaliphiles - Alkaline
– Soda lakes in Africa and western U.S.
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• Halophiles - Highly Salty
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– Natural salt lakes and manmade pools
– Sometimes occurs with extreme alkalinity
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Acidophiles
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pH 0-1 of waters
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at Iron Mountain
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Alkaliphile
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e.g. Mono Lake
alkaline soda lake, pH 9
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salinity 8%
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solar salterns
Owens Lake,
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Great Salt Lake
coastal splash zones
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Dead Sea
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BIOCHEMICAL UNITY
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BIOLOGICAL DIVERSITY
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Biochemical unity & biological
Bacterium
diversity E coli
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“Road map of evolution”
Roundworms
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Arabidopsis
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House mouse
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organisms acquire and pass on their novel traits, in addition
to other existing traits, from one generation to the next.
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This explains the origin of new species of organisms and the
vast diversity that is observed in the biological world.
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However, it is believed that the origin of all organisms can be
traced back to one common ancestor due to several
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underlying biochemical similarities.
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Prokaryotic cells Eukaryotic cells
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Nuclear material concentrated in a Nuclear material contained in
specific region of the cytoplasm. membrane-bound organelle called
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nucleus.
Does not contain golgi complex & Contains golgi complex &
mitochondria. mitochondria
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Majority are unicellular organisms. Mostly multicellular organisms
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Can reproduce through sexual & Reproduce through sexual
asexual means. means.
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