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Dar Et Al-2016-Caracterizacion de P Columella y R Natalensis en EGIPTO Usando Datos Moleculares y de Conchilla PDF
Dar Et Al-2016-Caracterizacion de P Columella y R Natalensis en EGIPTO Usando Datos Moleculares y de Conchilla PDF
Yasser Dar, Said Amer, Rima Zein Eddine & Gilles Dreyfuss
To cite this article: Yasser Dar, Said Amer, Rima Zein Eddine & Gilles Dreyfuss (2016):
Characterisation of Pseudosuccinea columella and Radix natalensis (Gastropoda:
Lymnaeidae) in Egypt using shell and molecular data, Molluscan Research, DOI:
10.1080/13235818.2015.1064512
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MOLLUSCAN RESEARCH, 2016
http://dx.doi.org/10.1080/13235818.2015.1064512
subunit rRNA and the polymorphic mitochondrial cytochrome oxidase subunit 1 (CO1) genes snails; taxonomy
were used to determine the genetic identity and the potential diversity of the snails. Little
intrasequence variations were detected in the sequences of both gene loci, indicating the
potential homogeneity of lymnaeid populations in Egypt. Generated sequences of the
mitochondrial CO1 gene locus for R. natalensis showed obvious heterogeneity compared to
other sequences in GenBank. Molecular characterisation of these lymnaeids might help to
understand the snails’ biodiversity in a bid to control these populations and their related
diseases.
0.57 ± 0.06
0.58 ± 0.04
0.66 ± 0.06
0.63 ± 0.05
0.61 ± 0.04
0.64 ± 0.04
0.62 ± 0.04
0.63 ± 0.04
aw/ah*
relationships. Moreover, genetic tools are used to
study the fluke/snail specificity and the role of geo-
graphic isolation and adaptation on such interaction
0.28 ± 0.05
0.27 ± 0.05
0.26 ± 0.04
0.27 ± 0.04
0.25 ± 0.04
0.24 ± 0.05
0.23 ± 0.05
0.23 ± 0.4
(Bargues and Mas-Coma 1997), as well as to infer the
sl/sh*
susceptibility or resistance to digenean infection
Ratios
(Gutierrez et al. 2003). Nuclear genes including small
0.72 ± 0.05
0.73 ± 0.05
0.74 ± 0.04
0.73 ± 0.04
0.77 ± 0.04
0.75 ± 0.04
0.76 ± 0.05
0.77 ± 0.05
subunit ribosomal RNA (18S rRNA), internal transcribed
ah/sh*
inter-spacers (ITS) (Bargues and Mas-Coma 1997;
Bargues et al. 1997; Remigio and Blair 1997a; Abouheif
et al. 1998; Stothard et al. 2000; Puslednik et al. 2009),
0.47 ± 0.04
0.50 ± 0.03
0.58 ± 0.07
0.54 ± 0.03
0.56 ± 0.04
0.55 ± 0.03
0.56 ± 0.03
0.57 ± 0.03
sw/sh*
and mitochondrial genes such as large subunit (16S)
(Remigio and Blair 1997b) and cytochrome oxidase
subunit 1 (CO1) (Bargues et al. 2011b) are widely
3.09 ± 0.72
2.68 ± 0.74
2.68 ± 0.65
2.74 ± 0.60
2.31 ± 0.54
2.73 ± 0.66
2.34 ± 0.60
2.45 ± 0.61
morphic loci such as microsatellite/minisatellite loci
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4.54 ± 0.81
4.21 ± 0.58
4.96 ± 0.78
4.64 ± 0.55
4.81 ± 0.60
5.23 ± 0.86
4.63 ± 0.44
5.24 ± 0.62
Table 1. Mean values (± SD) for shell measurements and ratios of Pseudosuccinea columella and Radix natalensis from Egypt.
Ramzy 1999; El-Shazly et al. 2002; Dar et al. 2005). In
addition, little is known about the genotypic identity
of these snails in Egypt. Therefore, this study was
Note: *Parameter showed significant difference (P < 0.001) between populations regardless of the species.
5.22 ± 0.93
4.96 ± 0.71
5.89 ± 0.97
5.49 ± 0.63
5.69 ± 0.67
6.04 ± 0.99
5.47 ± 0.49
6.09 ± 0.67
10.18 ± 1.47
10.08 ± 1.13
10.21 ± 1.07
10.91 ± 1.78
10.66 ± 0.98
9.93 ± 1.36
9.79 ± 0.92
R. natalensis
P. columella
expressed in mm. Four ratios were also calculated for to find variables characterising snail species and popu-
each shell: sw/sh; ah/sh; sl/sh; and aw/ah (Table 1). lations. Stepwise linear discriminant analysis was per-
DNA was extracted from representative samples formed to select the different variables. Calculations
(five samples for P. collumella and 12 for R. natalensis) were made using the software R (Ida and fda functions).
of each snail species using QiAamp DNA Mini Kit
(Qiagen) following the manufacturer’s instructions. A
Nanodrop ND-1000 spectrophotometer was used to Results
quantify and check purity of DNA. PCR amplification
of ribosomal small subunit (18S) rRNA and mitochon- Morphometric study
drial cytochrome c oxidase subunit I (CO1) were done The two species have a similar shell shape (Figure 1),
utilising primer sets described by Jorgensen et al. but SEM examination of P. collumella shell surface
(2010) and Correa et al. (2011), respectively. PCR reac- showed characteristic transverse microsculptures on
tions were performed in 25 µl reaction volumes con- the periostracum that clearly distinguish this snail
taining 500 ng/µL of genomic DNA. The PCR mixture from R. natalensis (Figure 2) which lacks these striations.
contained 5 µl 10× buffer, 0.8 µl dNTPs (each), 0.5 µl The morphometric study showed that the mean
of each primer (20 ng/µL), 0.4 µl of Taq polymerase, values of R. natalensis shell width and aperture width
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1.5 µl MgCl2. PCR conditions for 18S were set as a dena- were significantly larger (t = −6.951, P < 0.001; t =
turation step at 94 °C for 3 min, followed by 30 cycles of −6.234, P < 0.001, respectively) than those of
denaturation at 94 °C for 30 s, annealing at 55 °C for 30 P. columella. In addition, ratios sw/sh (W = 906.5, P <
s and extension at 72 °C for 45 s; a final extension step 0.001), ah/sh (t = −4.815, P < 0.001) and aw/ah (t =
at 72 °C for 7 min was included. Cycling conditions for
CO1 involved a denaturation step at 95 °C for 5 min, 30
cycles each including denaturation at 95 °C for 1 min,
annealing at 50 °C for 30 s and extension at 72 °C for
30 s, and a final extension step at 72 °C for 10 min. Pro-
ducts were subjected to electrophoretic separation
using 1.5% agarose gels, stained with ethidium
bromide and visualised on a UV transilluminator.
PCR products were purified using QIAquick PCR Puri-
fication Kit (Qiagen), according to the manufacturer’s
instructions and sequenced directly using Big Dye Ter-
minator v3.1 Cycle Sequencing Kit (Applied Biosys-
tems) on an ABI 3130 Genetic Analyzer (Applied
Biosystems). Generated sequences were assembled
using ChromasPro v1.5 software (http://technelysium.
com.au/?page_id=27). The obtained sequences were
aligned with each other and reference sequences
using ClustalX (http://www.clustal.org/) to confirm
species identification. Maximum likelihood (ML) with
GTR + G + I model implemented in MEGA5 (http://
www.megasoftware.net) was used to assess the phylo-
genetic relationships among different populations of
lymnaeids. Unique nucleotide sequences generated
in this study were deposited in GenBank under acces-
sion numbers LC015496–LC015509 for 18S and
LC015510–LC015523 for CO1.
Values of morphometric parameters and corre-
sponding ratios were subjected to comparison of var-
iances using Fisher’s exact test. When the variances
were equal, Student’s t-test was used; if not a Wilcoxon
test was applied to determine the levels of significance
between the two snail species. For analysis of snail
populations, the Kruskal and Wallis test was used if
Figure 1. Views of the shells of Pseudosuccinea columella from
the variances were different and one-way ANOVA
Al-Tahrir, Behaira governorate, Egypt and Radix natalensis from
when the variances were equal. All analyses were per- Mansouria, Giza governorate, Egypt. A, Dorsal view of
formed using Statview 5.0 software (SAS Institute Inc.). P. columella; B, aperture view of P. columella; C, dorsal view
In addition, the function discriminant analysis was used of R. natalensis; D, aperture view of R. natalensis.
4 Y. DAR ET AL.
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Figure 2. SEM of shell surface. A, Pseudosuccinea columella; B, Radix natalensis. Scale bar = 500 µm.
−9.6, P < 0.001) were higher in R. natalensis than in sequences of the gene . The nucleotide polymorphism
P. columella. In contrast, the spire length and the ratio of A in first sequence to G in the second was detected
sl/sh of the former snail had significantly lower values at position 41. Moreover, marked heterogeneity was
(W = 11408, P < 0.001, t = 4.815, P < 0.001, respectively) noted when aligned with reference sequences in
than the latter. When the snail populations were com- GenBank, with 97% homology compared to
pared to each other, regardless of the species, signifi- EU818835 of R. natalensis from Malawi (Albrecht et al.
cant differences were noted between the populations 2008) and 88% homology with sequence JN614403
for all studied measurements and ratios (Table 1). Fur- for R. natalesis from Réunion (Correa et al. 2011).
thermore, results of the function discriminant analysis Phylogenetic analysis based on CO1 sequences
showed that three morphometric parameters (shell showed that R. natalensis was toward the end of the
height, aperture width and sw/sh ratio) could correctly clades, and samples were separated into their respect-
discriminate between the two snail species 90% of the ive sites. The Egyptian haplotypes of R. natalensis
time. Additionally, the morphometric parameters used clustered together with high bootstrap values of
in the present study could discriminate the snail popu- 100% (Figure 3) and with that from Malawi
lations of each species, but at a lower percentage (EU818835). In addition, our tree placed P. columella
(50%). However, more samples were needed to ascer- and ‘Lymnaea’ diaphana King, 1830 as sister groups.
tain the utility of such parameters to discriminate
between snail populations.
Discussion
Lymnaeidae is an important family because of its veter-
Molecular analysis
inary and public health significance in its role in digen-
Homology search of 18S sequences confirmed the ean transmission (Mas-Coma et al. 2005). Egypt is the
morphological identifications of the Egyptian snails as land bridge between Africa and Asia, so lymnaeids in
P. columella and R. natalensis. Alignment of the Egypt may have played a central role in dissemination
obtained sequences showed no intrasequence vari- of trematode infections to other continents (Mas-Coma
ations of both species as well as complete identity et al. 2009). In this country, P. columella and R. natalensis
with corresponding sequences in database. are important fascioliasis transmitting lymnaeids (Dar
CO1 sequences generated from P. columella snails et al. 2005). Analysis of shell measurements indicated
were identical to sequence FN598165 of P. columella that the mean values of shell and aperture width, and
from Colombia (Bargues et al. 2011b) and AY227366 the ratios sw/sh, ah/sh and aw/ah, were larger in
reported by Remigio and Hebert (2003) for specimens R. natalensis compared to P. columella. Conversely,
from Australia and 98% identical to JN872458 of R. natalensis had lower means for spire length and sl/
P. columella from Argentina (Standley et al. 2013). sh ratio than P. columella. These results agree with
Notably, two sequence types of CO1 were generated the morphological features of both species (Figure 1)
from R. natalensis, resulting in the occurrence of two as R. natalensis has a wide ovoid shell and
haplotypes (Rnh1 consists of seven individuals and P. columella has a slender shell with a long ovate aper-
Rnh2 consists of five individuals). However, haplotype ture (Hubendick 1951; Brown 1994). However, the
codes were only provisional due to incomplete range values of individual parameters overlapped in
MOLLUSCAN RESEARCH 5
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Figure 3. Maximum likelihood (ML) tree showing the genetic relationship of Egyptian Lymnaeidae to others in GenBank based on
mitochondrial CO1 sequences. Evolutionary relationships of 30 taxa were inferred using ML (see Materials and methods). Numbers
at the internodes correspond to percent bootstrap values from 3000 replicates. Biomphalaria pfeifferi Krauss, 1848 (DQ084830) (Pla-
norbidae) and Trimusculus afra Gmelin, 1790 (EF489388) (Trimusculidae) were used as outgroups. Scale bar indicates 5 substitutions
per 100 sites.
the two species, indicating that these criteria alone (Figure 2) seem to be the most efficient character to
were not reliable in discriminating between them. For distinguish P. columella from other lymnaeids (Huben-
instance, the shell width of R. natalensis varied from dick 1951; Brown 1994; Pointier et al. 2007; Correa
8.7 mm to 4 mm, compared to 7.6 mm to 3.5 mm in et al. 2011). However, this distinctive character is of
P. columella. Similarly, Bargues et al. (2011b) reported limited practical use for a non-expert malacologist
that although the morphometric comparison allows (Correa et al. 2011).
the differentiation of Galba cousini Jousseaume, 1887 DNA sequences of 18S indicated no intrasequence
and Lymnaea meridensis Bargues, Artigas & Mas- variation and the generated sequences were identical
Coma, 2011, the shell parameters of Galba cousini to the corresponding sequences in GenBank, indicating
and P. columella overlapped. In addition, Correa et al. the conservative nature of the 18S gene. The conserva-
(2011) indicated that shell characters alone did not tive nature of SSU sequences has shown its suitability for
reliably enable accurate identification of most Neotro- lymnaeid identification (Bargues and Mas-Coma 1997;
pic lymnaeids. However, the previous authors restrict Bargues et al. 1997). In contrast, Stothard et al. (2000)
the usage of shell shape to identify some species detected variation within and between populations of.
which have distinguishing morphological characters R. natalensis from Madagascar based on analysis of
such as ‘L.’ diaphana, Galba cousini and P. columella. SSU gene locus, reflecting the impact of selecting differ-
This difficulty might be due to the phenotypic plasticity ent regions of the gene. Similarly, no intrasequence
in shell shape in lymnaeids, as their shells may vary polymorphism was detected in the generated mtDNA
according to environmental conditions (Samadi et al. CO1 sequences of P. columella and very little in those
2000; Pfenninger et al. 2006). Taken together, the of R. natalensis, indicating the potential genetic hom-
high intraspecific variability in shell morphology and ogeneity (Bargues et al. 2011b) of Egyptian populations.
their anatomy may be insufficient to develop a robust In contrast, two of the endemic clades of Radix spp. on
classification base for Lymnaeidae (Correa et al. 2011). the Tibetan Plateau, China, showed a remarkably high
Thus, in addition to traditional morphological traits, genetic diversity, perhaps due to multiple colonisation
the characteristic micro-sculptures on the periostracum events combined with a relatively long intra-plateau
6 Y. DAR ET AL.
evolution (von Oheimb et al. 2011). However, obvious snails transmitting human fascioliasis in South and Central
genetic heterogeneity of R. natalensis CO1 sequences America. Journal of Parasitology 83, 1086–1092.
Bargues, M.D., Vigo, M., Horak, P., Dvorak, J., Patzner, R.A.,
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Pointier, J.P., Jackiewicz, M., Meier-Brook, C. & Mas-Coma,
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for Radix populations in Egypt. Similarly, Bargues et al. intermediate hosts of trematodiases, based on nuclear
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between the lymnaeids from Réunion, Colombia and Evolution 1, 85–107.
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