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10 - Chapter 3 PDF
10 - Chapter 3 PDF
3
MATERIALS AND METHODS
PREPARATION OF VERMICOMPOST
Vermibed preparation
covering it with gunny bag in order to let out the initial heat produced
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prepared in plastic containers of 45x35x15 cm size (Plate 4) and the
Inoculation of earthworms
the rearing room with the relative humidity and the temperature of 75-85
carried out with three replicates for each substrate with proper control as
etc for each treatment and its control are indicated in the following
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Experimental design showing the details of vermicomposting trials.
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The total number and total biomass of earthworms in the
were observed after 30,60 and 90 days and the results were statistically
all the treatments and all the controls and sieved and stored for further
table.
Methods used for analyzing various physico-chemical parameters of the
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The C/N and C/P ratio were also found out for the worm-
A- B
Percentage increase/decrease =------------X 100
A
Where,
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Ten gram of each sample was taken in a 250 ml sterile
were prepared from 10~1 to 10~6 with sterile distilled water. The
diluted samples were used for the analysis of total colony forming
units.
after incubation i.e., 2 days for bacteria, 5 days for fungi and 12 days
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ISOLATION, IDENTIFICATION AND MASS MULTIPLICATION OF
Tube method
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(Broughton and Dilworth, 1971). The test was performed in
of controls x 100.
Pouch method
green gram, Phaseolus radiatus in its top fold. The entire setup was
maintained.
and the root system was observed for the presence or absence of
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nodules. Suitable control was also maintained. The isolates that
Composition (Gm/lt)
CaHP04 1.00
K2HP04 0.20
MgS04 0.20
NaCI 0.20
FeCb 0.10
Distilled water 1000 ml
pH 6.8
mouth (Beer bottle) of 500ml capacity with its bottom cut and neatly
dimensions in such a way that the neck of the bottle snugly fits in it
(Plate 8). Cotton lamp wick was used to pass through the narrow
Well germinated seeds were picked out with sterile forceps and
placed into the holes, one seed on each hole with the radical facing
BIOCHEMICAL TESTS
one percent Congo red solution per liter and the growth of
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Growth in Hofler’s Alkaline Broth (Hofler, 1935)
A loop full of the exponential phase culture was inoculated
30°C for 4 days and observed the growth. Growth was measured in
Ketolactose production
Bernaerts and De lay (1963). A loop full of bacteria from YEMA slants
petriplate was flooded with a shallow layer of Benedict reagent and left at
room temperature. The formation of yellow ring of Cu20 around the cell
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growth in the glucose peptone broth was observed. Poor growth is
MOLECULAR STUDIES
DNA Extraction
was carried out using the facility at Macrogene Inc (Seoul, Korea).
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Nucleotide sequence accession
The 16S rDNA sequences for the Rhizobium sp. and Bacillus
EF601985 respectively.
Phylogenetic analysis
the PCR product were compared with the Rhizobium sp. and Bacillus sp.
BLAST. All the sequences were aligned using the multiple sequence
(1980). The multiple distance matrix obtained was then used to construct
www.qenebee.msu.su.
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Restriction site analysis in 16S rDNA
were analyzed using the NEBCutter program version 2.0 tools available
inoculated with 0.1 ml of late log phase culture. The absorbance of the
resulting culture at zero time was 0.01 at 540 nm. The culture was grown
for 3-9 days. Depending on the growth, the culture was checked for
medium and maintained for 4-9 days. This was called as the
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After incubation period the cell count was done by
normal plate count method to determine the viable count at 28+ 2°C
petriplate. Similarly the cell count was determined from fresh broth
campus. Soil adhering on the root was gently shaken and collected
agar (NA), Rose bengal agar (RBA) and Pikovskaya agar medium
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accordance to the Bergey’s manual of determinative bacteriology,
master plate and streaked in the Nutrient agar slants, incubated and then
bacterial strains.
Gram’s staining
crystal violet Iodine complex were said to be gram positive and the
bacteria that retained the safranin color were said to be gram negative.
This was done for all the bacteria which were isolated from rhizosphere
depression slide. A loop full of 18hrs culture was placed in the center of
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clean cover slip and then placed over the depression slide with the
concave surface facing the cover slip and then focused in the phase
incubated at 37°C for 24hrs and 0.5ml of Kovac’s reagent was added
and incubated again. Formation of red color ring at the top of the culture
at 37°C for 24hrs. After incubation 5 drops of methyl red were added and
the result was observed. The color formed in the tube indicated the
at 37°C for 24 hrs. After incubation 10 drops of VP-1 reagent were added
and then 2-3 drops of VP-2 were added, shaken well and the results
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were observed. Appearance of red color indicated the positive result and
agar slant and incubated at 37°C for 24-48 hours. Following incubation,
Catalase test
loop and smear was prepared on a clean slide. 2-3 drops of H202 was
indicated a positive result, and the slide which did not show the
incubated at 37°C for 24-48 hours. After incubation 2-3 drops of reagent
A (0.8 percent solution of sulfanilic acid in 5N acetic acid) and 2-3 drops
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acid) were added to each tube and observed. The red color formed
immediately indicated the positive result and the tubes which did not
liquid medium for 48 hours. This was called as the starter culture.
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Microscopic examination
blue and observed, for their cultural characteristics and the structure of
determine the viable count on 7th, 9th, 12th and 14th day at 25+2°C
the petriplate. Similarly the spore count was determined from fresh
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POT CULTURE STUDIES
biomass of E.eugeniae and also higher NPK and other minerals, only the
further pot culture studies after mixing with biofertilizers i.e., rhizobium for
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Experimental design for pot culture studies of Vigna unguiculata (L.)
Walp.
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Vermicompost enriched with mixed inoculation of
in soil was used as substrate for the pot culture studies. Ten
water and then sown in the control (soil only) and in the treated
for each treatment. The observations were recorded and the mean
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Root length
The root length was measured from a fixed point just below
the surface of the soil to the end of the root at the vegetative phase on
35th day after sowing (DAS) and at the harvest stage (on 70 DAS) and
expressed in centimeter (cm). The long root which develops from the
Shoot length
The height of the plant itself was measured from a fixed point
just above the surface of the soil to the growing tip of the main stem at
two stages i.e., vegetative stage (on 35 DAS) and at harvest stage (on
removed from the pots and gently washed with water, blotted on
a filter paper and the number of root nodules per plant were
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Number of root branches
removed from the pots, gently washed with water, blotted on a filter
paper, the shoot portion alone was removed from the whole plant and
then weighed. The average fresh weight was expressed in grams (g) for
each treatment.
After measuring the fresh weight, the plants were dried in hot
air oven at 80°C for 24 h and weighed. The average dry weight of the
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Root wet weight
The plants were carefully removed from the pots, gently washed with
water, blotted on a filter paper; the root region alone was removed and
weighed. The average fresh weight was expressed in grams (g) for each
treatment.
After measuring the fresh weight, the root portions were dried
in hot air oven at 80°C for 24 h and then weighed. The average dry
Number of internodes
from a fixed point just above the surface of the soil to the growing tip of
the main stem at harvest stage (on 70 DAS) and was expressed in
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Number of internodes per feet
from the surface of the soil in the main stem at harvest stage (on 70
The total leaf area index was calculated in the harvest stage
(70 DAS) using the formula described by Williams and Steinberg (1958)
the plant growth (Plate 17). The total number flowers present in
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Number of pods
was summed up and the mean was worked out and expressed as
Pod length
the length of the pod from each treatment was measured and their
blotted on a filter paper, weighed and the mean wet weight of the
(g).
After measuring the wet weight, the pods were dried in hot air
oven at 80°C for 24 h and then weighed and the average dry weight of
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Number of seeds per pod
number of seeds per pod was counted and the average number of
seeds per pod was calculated for each treatment (Plate 20).
The seeds were dried in the hot air oven at 80°C for 24 h and
the dry weight of the seeds were calculated and expressed in grams (g)
Peeling thickness
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Leaf chlorophyll content
using the method of Arnon (1949) and expressed as mg/g of fresh tissue
(CFU) of Rhizobium sp. Bacillus sp. and Aspergillus sp. at the initial and
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Procedure followed for the enumeration of different colony forming
microorganisms
Fully expanded fifth leaf from the tip of the shoot was
the 35 and on the 70 DAS. The dust particles on the samples were
were dried under shade and then in a stainless steel hot air oven at
60°C. The dried samples were chopped with stainless steel scissors
and ground in a Wiley mill and used for the analysis of nutrients
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i.e., nitrogen (MicroKjeldhal method), phosphorous
Nitrogen content
in percentage.
Phosphorous content
Potassium content
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Available nitrogen
Available phosphorous
in mg/kg.
Available potassium
expressed in mg/kg.
Statistical Analysis
DOS soft ware SPSS and the critical difference were worked out at
five and one percent level and the results were tabulated.
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