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3rd Day
3rd Day
BY IRISH P.
PLASMA MEMBRANE AND TRANSPORT MECHANISM
PLASMA MEMBRANE
• Serves as the boundary between the cell’s internal
and external environments. Regulates all substances
that enter and exits the cell
Figure 1.1. Plasma Membrane Components
• Exhibits selective permeability, which is why it is The model shows how the components of the plasma
referred to as a semi-permeable membrane membrane are placed in relation to each other.
The structures, which can either be found superficially
A.1. Structure and Organization attached to the outside layer of the membrane
The main body of the plasma membrane is composed of
(peripheral) or found embedded within the bilayer
an amphipathic molecule known as a Phospholipid.
(integral), have specific functions in the plasma
Amphipathic molecules are those that exhibit the unique
membrane. These components can be divided into three
characteristic of having both hydrophilic (water-loving)
(3) categories based on their function:
and hydrophobic (water- fearing) parts. Below you can see
• Cell-surface markers
the parts of a phospholipid:
These are responsible for the recognition of foreign
and local (self) cells and tissues. These markers are
crucial for histocompatibility of the immune
system. The markers responsible are glycoproteins
and glycolipids.
Types of Reactions
The products formed will depend on the type of
The Organizational Chart Of Matter reaction occurring. Generally speaking, there are four (4)
The Periodic Table of Elements
main types of chemical reactions:
The periodic table is divided mainly by Families. • Composition/Synthesis Reactions
Families are the elements in a column in the periodic table. These are reactions where multiple reactants, such as
The older International Union of Pure and Applied Chemistry element A and B
(IUPAC) system would use Roman numerals and letters to interact with each other to form element a single
differentiate the families; however the modern IUPAC product, compound AB. Energy is required for
makes use of Arabic numbers which simply numbers the composition reactions to occur. The general formula for
columns 1 to 18. composition reactions is: A + B = AB.
Biochemical Reactions 𝑁𝑎(𝑙) + 𝐶𝑙(𝑙) 𝑁𝑎𝐶𝑙(𝑔)
New compounds are formed through a chemical Equation 1.1 Example of a Composition Reaction Used in
reaction. To understand how the reaction took place, a various industries, salt (NaCl) is a common example of a
chemical equation is written to see which elements were composition reaction. The elements sodium and chlorine are
present in both liquid forms when they interact. Once they carbohydrates. These can be in ring structure or chain
interact, they form salt in an aqueous solution. Salt farms, formation. Examples of these include Glyceraldehyde (3
such as those seen in Pampanga or Parañaque, use this to carbon), Ribose and deoxyribose (5 carbon), and Glucose,
create salt. As the salt farm dries, the salt suspended in the fructose, and galactose (6 carbon).
aqueous solution is left behind while the water evaporates. Disaccharides are simply combinations of
monosaccharides linked together by their fused -OH
• Decomposition Reactions compounds, forming the glycosidic linkage. Examples
These are reactions where one (1) compound include Sucrose (glucose and fructose), Lactose (glucose and
undergoes changes due to an external factor that galactose), and Maltose (glucose and glucose).
initiates the reaction (temperature, Ph). It is broken Polysaccharides are simply chains of disaccharides.
down into its constituents and releases energy as the These differ in the level of branching chains. Examples
bonds are broken. include Glycogen (seen in animals, formed from amylose
CATEGORY CARBOHYDRATES
𝐻2𝑂2(𝑙) 𝐻2𝑂(𝑙) + 𝑂2(𝑔) Macromolecule Subunit Function
(example)
Equation 2.0 Sample Chemical Equation Starch, Glycogen Glucose Energy storage
Cellulose Glucose Structural
Hydrogen peroxide is used as a disinfectant for minor support
wounds and is usually stored in a tinted bottle. This is to (plants)
prevent the compound to decompose into water (H2O) and Chitin Modifie Structura
air (O2). d l support
Glucose (animals)
Functional Groups CATEGORY LIPIDS
Functional groups are specific groups of molecules that Macromolecule Subunit Function
are responsible for the varying molecular properties and (example)
interactions. These molecules have unique characteristics Triglycerides (Fat, Glycerol and Energy storage
and personalities, regardless of the individual atoms that Oil) three (3)
compose them. Below are the main functional groups fatty acids
involved in Organic and Biochemistry. Phospholipids Glycerol, two Cell
Biological Molecules (2) fatty acids, membranes
Biological molecules are essential macromolecules phosphate,
and non-polar
that are composed of smaller organic molecules. Since all
R group
biomolecules are organic, their common factor is the
Prostaglandins Five (5) Chemical
presence of Carbon.
carbon rings messengers
Biomolecules are polymers, meaning they are
with two (2)
formed from the combination of monomers (single subunit
non-polar tails
molecules) via dehydration synthesis. This process describes Steroids Four (4) fused Membranes,
the synthesis of new compounds while losing water. carbon rings hormones
Dehydration synthesis is the opposite of hydrolysis. Terpenes Long carbon Pigments,
Organic molecules are also capable of existing in chains Structura
more than one (1) form. Organic molecules which have the l
same molecular formula but exists in different forms are support
called isomers. Stereoisomers are a form of isomers whose CATEGORY PROTEINS
skeletal Macromolecule Subunit Function
(example)
Carbohydrates Functional Amino acids Catalysis,
transport
Carbohydrates are composed of carbon, hydrogen, Structural Amino acids Support
and oxygen with a ratio of 1:2:1. They differ in the number CATEGORY NUCLEIC ACIDS
of carbon atoms present. Their main function is storage due Macromolecule Subunit Function
to the large amounts of C-H bonds, which can store large (example)
amounts of energy. Categories of carbohydrates depend on DNA Nucleotides Encodes genes
the complexity of their constituents. RNA Nucleotides Needed
for gene
Monosaccharides are the simplest unit of
expression
chains), Amylopectin (seen in plants), and Amylose (seen in
plants, formed from glucose). Lipids
Nucleic Acid
There are only two (2) variants of nucleic acids:
Deoxyribonucleic acid (DNA) and Ribonucleic acid (RNA).
Their main function is the storage and synthesis of genetic
information of cells. Nuclei
Interphase
• S
Once the cell has accumulated enough building
blocks and energy, it beings the process of replicating and Anaphase B. Anaphase A can be observed once the
DNA. Genetic material is normally observed as semi- kinetochores (and in relation the chromatids) are pulled
condensed chromatids. The centrosome will be toward the opposite poles. The “pulling” is not caused
duplicated to form the mitotic spindle, which will be by the microtubules contracting, rather the subunits of
important in the separation of chromatids. the microtubule directly attached to the kinetochore
are removed, resulting in the chromatid to draw closer.
• G2 Anaphase B is observed when the poles themselves
Significant changes to the organelles and cell move apart. This causes the chromatids to move away
structure occur during this phase. The cytoskeleton is from the center of the cell, allowing a clear separation.
dismantled, organelles are duplicated, proteins The cell membrane will be visibly elongated at this
needed to separate chromosomes are synthesized, point.
and large amounts of energy are stored. Once anaphase is complete, the accurate division
Mitotic Phase and separation of the cell’s genome have been
After the preparations done during interphase are accomplished.
completed, the cell begins the process of aligning genetic
material, separating them, dividing the cell, and forming the
• Telophase
two (2) new daughter cells. The M phase can be subdivided
The second to the last phase is initiated once the
five (5) phases: prophase, metaphase, anaphase, telophase, separated chromosomes are clearly located on
and cytokinesis opposite poles of the cell. Microtubules and centrioles
• Prophase disassemble to construct the new cytoskeleton of the
Condensed chromosomes must be identified to daughter cells. A nuclear envelope will form around the
differentiate prophase with the end of interphase. DNA chromosomes. Once enclosed, these will uncoil and
replication has ended at this point and is being condensed begin replication for gene expression.
into thick, bulky structures called chromosomes. During late telophase, two (2) new nucleoli can be
Protein structures called centrioles begin to form and seen in the daughter cells. Daughter cells are either
migrate toward opposite ends of the cell. The centrioles diploid (denoted as 2n) or haploid (denoted as n). 2n
then organize an array of microtubules (spindle fibers), indicates that the cell contains two (2) sets of matching
which will later be sued to attach and pull the chromosomes from the original cell, while n indicates
chromosomes. Another set of microtubules will connect that the cell contains only one (1) set of chromosomes.
the centriole to the cell membrane, which is referred to as Human cells that are not involved in reproduction
an aster. (known as somatic cells) are diploid, while those that
The disintegration of the nuclear envelope signifies the are involved in reproduction (known as gametes) are
late phase of prophase and the transition to metaphase haploid.
known as prometaphase. • Cytokinesis
• Metaphase Once the chromatids have been separated, the
After the nuclear envelope is removed, the microtubule spindle will form an actin ring in between
microtubules attach to the kinetochore of the the two (2) new daughter cells. For animal cells, this is
chromosomes. Each chromosome has two (2) known as a cleavage furrow, while in plant cells it is
kinetochores, and each kinetochore will be connected a known as the cell plate. This results in the splitting of the
microtubule from one (1) of the centrioles. This results in cell membrane, hence the name cyto – cells, and kinesis
the chromosome being pulled into the center of the cell. – movement. Cytokinesis is different from karyokinesis
Once the microtubules have pulled all the - which is the overall movement of genetic material.
chromosomes, they will align at an imaginary equator Checkpoints and Regulation of the Cell Cycle
known as the metaphase plate. Metaphase ends when all The cell cycle requires specific indicators before
chromosomes have been neatly aligned at the plate. proceeding with each phase. To limit the errors that may
• Anaphase occur during each phase, three (3) main checkpoints are
This phase is the shortest, most crucial, and visually established. Each checkpoint is found in between critical
active phases of the M phase. The initiation of anaphase phases that may require regulation.
starts with the removal of cohesion proteins • G1 Checkpoint
(responsible for the presence of the centromere). This During Gap 1, the cell is focused on increasing
results in the two (2) chromatids of a chromosome cell size and accumulating proteins and energy. The
(sister chromatids) to separate. G1 checkpoint therefore evaluates if the necessary
Anaphase is divided into two (2) parts: Anaphase A conditions for DNA replication have been met. If
the G1 checkpoint has not been met, the cell will
either remedy the necessary conditions or revert
back into Gap 0 and wait until additional signals
indicate that the cell is ready for division.
• G2 Checkpoint
Similar to the G1 checkpoint, the G2
checkpoint asses the cell size and protein reserves
of the cell. However, the main feature of G2
checkpoint is that it evaluates the DNA replicated.
If the amount of DNA replicated is not enough or if
there is damage detected, the cell will not proceed
until the necessary changes have been made. The
G2 checkpoint is the last checkpoint before
proceeding with M phase.
• M Checkpoint
The M Checkpoint is also referred to as the
spindle checkpoint. It checks if all sister chromatids
are attached to their corresponding microtubules.
If the M Checkpoint is not met, the cycle will not
continue. This is crucial because Meta-anaphase
will determine the number of chromosomes found
in each cell.