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Int J CARS (2015) 10:1127–1140

DOI 10.1007/s11548-014-1126-5

ORIGINAL ARTICLE

The role of automatic computer-aided surgical trajectory planning


in improving the expected safety of stereotactic neurosurgery
M. Trope · R. R. Shamir · L. Joskowicz ·
Z. Medress · G. Rosenthal · A. Mayer ·
N. Levin · A. Bick · Y. Shoshan

Received: 10 July 2014 / Accepted: 24 October 2014 / Published online: 20 November 2014
© CARS 2014

Abstract and fMRI data of motor, sensory, speech, and visual areas.
Purpose Minimal invasion computer-assisted neurosurgi- An experienced neurosurgeon selected one target for each
cal procedures with various tool insertions into the brain may patient. Five neurosurgeons planned a surgical trajectory for
carry hemorrhagic risks and neurological deficits. The goal of each patient using three planning methods: (1) conventional;
this study is to investigate the role of computer-based surgical (2) visualization, in which scans are augmented with over-
trajectory planning tools in improving the potential safety of lays of anatomical structures and functional areas; and (3)
image-based stereotactic neurosurgery. automatic, in which three surgical trajectories with the low-
Methods Multi-sequence MRI studies of eight patients who est expected risk score are automatically computed. For each
underwent image-guided neurosurgery were retrospectively surgeon, target, and method, we recorded the entry point and
processed to extract anatomical structures—head surface, its surgical trajectory and computed its expected risk score
ventricles, blood vessels, white matter fibers tractography, and its minimum distance from the key structures.
Results A total of 120 surgical trajectories were collected
A shorter and restricted version of this paper was orally presented at (5 surgeons, 8 targets, 3 methods). The surgical trajectories
the 27th International Conference on Computer Aided Radiology and
Surgery, Heidelberg, Germany, 2013.
expected risk scores improved by 76 % (SD = 11.6 %; p <
0.05, two-sample student’s t test); the average distance of
M. Trope · L. Joskowicz (B) a trajectory from nearby blood vessels increased by 1.6 mm
School of Engineering and Computer Science, The Hebrew (SD = 0.5, p < 0.05) from 0.6 to 2.2 mm (243 %). The ini-
University of Jerusalem, Givat Ram Campus, 91904 Jerusalem,
Israel
tial surgical trajectories were changed in 85 % of the cases
e-mail: josko@cs.huji.ac.il based on the expected risk score and the trajectory distance
from blood vessels.
R. R. Shamir · L. Joskowicz Conclusions Computer-based patient-specific preoperative
The Edmond and Lily Safra Center for Brain Research (ELSC),
The Hebrew University of Jerusalem, Jerusalem, Israel
planning of surgical trajectories that minimize the expected
risk of vascular and neurological damage due to incorrect
R. R. Shamir tool placement is a promising technique that yields consis-
Department of Neurosurgery, Center for Functional and tent improvements.
Restorative Neurosurgery, Hadassah University Hospital,
Ein-Karem, Jerusalem, Israel

Z. Medress Keywords Stereotactic neurosurgery · Surgical trajectory


School of Medicine, Stanford University, Palo Alto, CA, USA planning · Surgical risk reduction · Safety · Computer-aided
Z. Medress · G. Rosenthal · Y. Shoshan
planning
Department of Neurosurgery, Hadassah University Hospital,
Ein-Karem, Jerusalem, Israel Introduction
A. Mayer · N. Levin · A. Bick
fMRI Unit, Department of Neuroradiology, Hadassah Hebrew Precise targeting of tumors, lesions, and anatomical struc-
University Medical Center, Jerusalem, Israel tures with a probe, a needle, a catheter, or an electrode inside

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1128 Int J CARS (2015) 10:1127–1140

the brain based on preoperative CT/MRI scans are nowadays ulation for movement disorders where trajectories to targets
standard surgical tasks in stereotactic neurosurgery. Common such as the subthalamic nucleus, internal Globus Pallidus,
stereotactic neurosurgical procedures may include stereo- and ventral intermediate thalamus region have been investi-
tactic brain biopsies, treatment of hydrocephalus, aspiration gated [9–11,16]; (2) stereo-electroencephalography, that is,
and evacuation of deep brain hematomas, Ommaya catheter the recording of electrical signals via electrodes surgically
insertion, deep brain stimulation, depth electrode insertion implanted into selected cortical targets to identify the epilep-
for epilepsy, endoscopic intraventricular procedures, and togenic zone of the brain using several multi-lead electrodes
minimal access craniotomies. In all cases, incorrect place- in patients with epilepsy [6,7,15,17]; and (3) general appli-
ment of the surgical tool may result in undesired outcomes cations/biopsy, that is, the sampling of brain tissue for histo-
such as non-diagnostic tissue samples, ineffective treatment, logical testing in a variety of brain locations [7–9,12–14,18].
intracranial hemorrhagic complications which despite their A variety of methods for optimal trajectory planning have
low incidence may bare the highest risk of severely harmful been developed in the past 5 years. Following earlier studies
neurological sequels, and temporary or permanent neurolog- [7,9,14], we have developed a method that computes safe tra-
ical damage [1–4]. Incorrect surgical tool placement may jectories, quantifies the safety improvement, and visualizes
also require an additional surgical procedure to achieve the the risk [12,13]. Essert et al. [10] extend this approach to a
intended therapeutic effect and/or to treat the ensuing compli- structured description of the risk factors and suggest using
cations. Such revision surgeries, which are sometimes open a qualitative test in addition to the quantitative one consid-
procedures, can be associated with significant additional risk, ering the complex nature of the problem. Liu et al. [16] test
time, and morbidity. the automatic planning method with multiple surgeons and
Planning a safe surgical trajectory that minimizes the various targets for DBS applications. De Momi et al. [15,20]
expected risk of incorrect surgical tool placement and its extend this method to multiple trajectories and new cortical
possible undesired outcomes is of great practical importance. target locations for epilepsy applications. Other groups have
Currently, preoperative trajectory planning of image-guided recently extended this approach [17,21]. The hardware/GPU
stereotactic neurosurgical procedures typically involves the acceleration and/or software-based preprocessing of the data
use of neuronavigation systems or stereotactic frame to select to facilitate interactive selection of trajectory are described
target structures on 2D axial, sagittal, and/or coronal cross- in [13,18,19]. The expected risk that is associated with each
sections of preoperative CT/MRI head scans. This manual trajectory is color coded and rendered on the entry point to
preoperative planning task might be complex, time consum- indicate its value [12,13,19]. This allows for the intuitive
ing, and user and patient dependent. It requires the surgeon selection of the surgical trajectory entry point. Finally, aug-
to mentally identify and reconstruct complex 3D structures, mented reality visualization of the risk and optimal trajec-
including blood vessels, eloquent brain areas, and the ventric- tories has been proposed for a more intuitive selection of
ular system and derive the spatial relationships between these optimal trajectory [19].
structures and the surgical trajectory. In some cases, manual The main goal of this study is to investigate the role of
corrections and optimization of the surgical plan is empiri- computerized preoperative surgical trajectory planning tools
cally performed during the surgery itself in sterile conditions in improving the expected safety of image-based stereo-
and under pressure without the possibility to thoroughly and tactic neurosurgery. We hypothesize that the visualization
quantitatively analyze the best possible surgical trajectory. of anatomical structures such as blood vessels, ventricles,
Indeed, the evaluation of the expected treatment risks is thus function-related areas, and white matter fiber tractography
a complex, challenging, and time-consuming task even for in single image data sets helps in planning safer surgical
experienced neurosurgeons. trajectories. In particular, we hypothesize that the automatic
Spatial visualization and segmentation of critical brain selection of a few surgical trajectories with the lowest esti-
structures has been proposed as a means of enhancing the mated risk systematically improves the expected safety of
neurosurgeon’s spatial perception and improving the aware- candidate trajectories compared with the conventional man-
ness of structures surrounding the planned trajectory [5–8]. ual selection method.
Recent publications describe methods for the visualization of This work extends previous studies by incorporating
the expected risk and the automatic computation of safe tra- patient-specific physiological mapping of important func-
jectories on the preoperative head image [5,8–19]. Common tions such as motor, somatosensory, speech, and vision. This
to these methods is that the structures at risk are first seg- facilitates the evaluation of the suggested planning method
mented and that the distance from the candidate trajectory to with respect to possible direct neural-functional damage in
each segmented structure is incorporated in a weighted sum addition to the risk of hemorrhage that was the focus of pre-
formula that maximizes the distances between structures and vious studies. Moreover, the targets in this work are located
trajectory. Previous studies can be classified into three cate- at various intracranial locations, and the planning method
gories based on their application domain: (1) deep brain stim- was evaluated by five neurosurgeons at different level of

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Int J CARS (2015) 10:1127–1140 1129

Fig. 1 Illustrative T1-Gd MR slices of eight patients and the targets gioma; e Patient 5: axial—65 y/o male with left temporal glioblastoma;
selected for each. a Patient 1: 31 y/o male with right posterior insu- f Patient 6: sagittal—45 y/o male with recurrent Anaplastic Oligoastro-
lar cavernous hemangioma; b Patient 2: 8 y/o female with recurrent cytoma close to the right pyramidal tract; g Patient 7: axial 42 y/o male
ependymoma of the left occipital ventricular wall; c Patient 3: coronal— with recurrent right occipital glioma; and h Patient 8: axial—22 y/o
55 y/o male with abscess within the right cerebral peduncle and upper NF1 female with left insular and basal ganglia solid and cystic pilocytic
midbrain; d Patient 4: coronal—5 y/o male with cystic craniopharyn- astrocytoma

expertise. Therefore, this work extends previous studies that


were limited to specific target zones or incorporated one/two Table 1 Summary of patients that were included in the study
neurosurgeons. Considering the limitations of a retrospective Patient # Target image Age Gender Diagnosis and
study, we believe that the distances of a planned trajectory to procedure
its surrounding structures are the most important objective 1 Fig. 1a 31 Male Right posterior insular
measures for improvement in trajectory’s safety. This study cavernous hemangioma.
adds more quantitative evidence in favor of the automation Minimal access craniotomy
of the trajectory planning and supports the results of previous 2 Fig. 1b 8 Female Recurrent ependymoma of
few studies that have reported this measure [8,11,14]. the left occipital
ventricular wall. Minimal
access craniotomy
3 Fig. 1c 55 Male Abscess within the right
Materials and methods cerebral peduncle and
upper midbrain.
We have designed a comprehensive retrospective study and Stereotactic drainage via
twist drill
implemented a software prototype of our previously pub-
4 Fig. 1d 5 Male Cystic craniopharyngioma.
lished method [12,13] to test the abovementioned hypothe-
Stereotactic drainage via
ses. twist drill
5 Fig. 1e 65 Male Left temporal glioblastoma.
Study protocol Minimal access craniotomy
6 Fig. 1f 45 Male Recurrent anaplastic
Multi-sequence anatomical, functional, and diffusion tensor oligoastrocytoma close to
MRI studies of eight patients who underwent image-guided the right pyramidal tract.
Minimal access craniotomy
stereotactic neurosurgery for intracranial biopsy, stereotac-
7 Fig. 1g 42 Male Recurrent right occipital
tic drainage, or minimal access craniotomy at our institution glioma. Minimal access
were retrospectively obtained (Fig. 1; Table 1). The patients craniotomy
were selected by a senior neurosurgeon (YS) based on their 8 Fig. 1h 22 Female Left insular and basal
tumor location to maximize target location variability. The ganglia solid and cystic
MRI studies were first preprocessed in the computational lab- pilocytic astrocytoma.
Stereotactic Biopsy and
oratory. For each patient study, the scans were first aligned
drainage via twist drill
to establish a common geometric reference frame. Next, the

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Fig. 2 Illustration of structures


segmentation and delineation on
a T1-Gd MR scan: axial,
sagittal, coronal, and 3D view
showing the blood vessels (red),
the ventricles (purple), the
function-related areas—motor
activation (orange),
somatosensory activation (blue),
speech activation (green), and
visual activation (yellow)—and
the white matter fibers
tractography motor (light
orange), sensory (light blue),
vision (light yellow), and
high-density SLF (light green)

scans were segmented to extract the head outer surface, ven- determine to what extent the differences in trajectory plans
tricles, blood vessels, high-density white matter fibers trac- were followed by the presented risk information. For each
tography, and the cortical functional motor, visual, sensory, method, the surgeon was given the option to select a new
and speech areas (Fig. 2). A senior neurosurgeon (YS) who trajectory if a safer option was found or to retain the trajec-
did not participate in the rest of the study selected one tar- tory from the previous selection. For each surgeon, target,
get point for each patient and defined a region on the skull and method, we record the entry point and its corresponding
surface for candidate entry points. surgical trajectory and compute various estimated risk mea-
Five neurosurgeons—two senior neurosurgeons (experts) surements. Finally, we perform a detailed data analysis of the
and three junior neurosurgeons (trainees)—were then asked collected data in the computational laboratory.
to plan a surgical trajectory for each predefined target using
three methods: (1) the conventional method based on 2D Patient scans
axial, sagittal, and coronal views of the original MRI scans;
(2) the visualization method, in which scans are augmented Eight patients who underwent image-guided stereotactic neu-
with overlays of the anatomical and functional structures seg- rosurgery at our institution were retrospectively selected.
mentations; and (3) the automatic method, in which the sur- The patients (6 males and 2 females, ages 5–65; Table 1)
geon chooses one of the three automatically computed sur- were selected to represent variety of diseases and target
gical trajectories with the lowest risk score proposed by the locations. Preoperative imaging studies of each patient con-
software. sisted of selected multi-sequence MR scans: (1) T1-weighted
To estimate the direct effect of the visualization and auto- gadolinium-enhanced magnetic resonance scan (T1-Gd)
matic methods on trajectory planning with respect to the con- 512 × 512 × 208/216 voxels3 , 0.49 × 0.49 × 1.0 mm3 ; (2)
ventional method, the methods were used in subsequent order fluid-attenuated inversion recovery scan (FLAIR) 512 ×
such that the trajectory selected with the conventional method 512 × 208/216 voxels, 0.49 × 0.49 × 1.0 mm3 ; (3) diffu-
was presented to the neurosurgeon when planning with the sion tensor imaging scan (DTI) 128 × 128 × 50/60 vox-
later methods. This may induce bias in the selected trajecto- els, 2.0 × 2.0 × 2.0 mm3 , and; (4) functional magnetic res-
ries, as the neurosurgeon may prefer a trajectory nearby the onance imaging scans (fMRI) 80 × 80 × 30/40 voxels,
one that was originally selected. However, this bias reduces 2.75 × 2.75 × 3.0/3.5 mm3 . The scans were acquired with
the efficacy of our methods, and therefore, our results are a Siemens 3T MAGNETOM Trio scanner prior to surgery.
probably a conservative prediction for the actual expected All scans were registered to the T1-Gd sequence as follows.
improvement. More importantly, it facilitates the direct com- The FLAIR and T1-Gd were registered using custom soft-
parison of the methods, and otherwise, it would be hard to ware that implements a rigid-body point-based registration

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Int J CARS (2015) 10:1127–1140 1131

method [22]. DTI and T1-Gd were registered using the statis- bellum and the brain stem areas. The remaining surfaces were
tical parametric mapping software package (SPM; SPM lab, considered candidate entry areas.
University College London, London, UK) that computes the
rigid-body transformation by maximizing the mutual infor- Diffusion tensor imaging (DTI)
mation between the “B0” and the T1-Gd images [23]. fMRI
and T1-Gd were registered using BrainVoyager (Brain Inno- DTI image processing and analysis was performed using
vation, Maastricht, Netherlands) that computes the rigid- MrVista [28]. The mean of the non-diffusion weighted
body transformation by maximizing the mutual information images was automatically aligned to the T1-Gd scan using a
between the echo planar image (EPI) sequence with the T1- rigid registration mutual information algorithm. Fiber trac-
Gd image. tography was used to delineate pathways (pyramidal tract,
optic radiation, and superior longitudinal fasciculus) for each
Targets patient study. Pyramidal and visual pathways’ tracking was
performed using the probabilistic ConTrack algorithm [29].
Targets were chosen for each patient on the T1-Gd scan. Superior longitudinal fasciculus was delineated using a deter-
Patients’ characteristics and their specific clinical diagnosis ministic fiber tractography algorithm [30]. A senior neuro-
are presented in Table 1 and Fig. 1. A specific location within surgeon (YS) verified that the resulted pathways are anatom-
each patient’s tumor was selected by a senior neurosurgeon ically reasonable.
(YS) such that the target is a safe and effective location.
Functional MRI (fMRI)
Anatomical structures
fMRI data analysis was performed using the BrainVoy-
the anatomical structures include the segmentation of the ager Qx software package [31]. Head motion correction
head outer surface, the ventricles, and blood vessels with and high-pass temporal filtering in the frequency domain
diameter >1 mm that are extracted from the volume T1-Gd (3 cycles/total scan time) were applied to remove drifts and
scans (Fig. 2). The outer surface of the head is extracted to improve the signal-to-noise ratio. Functional images were
as described in Shamir et al. [24]. First, the air outside registered and incorporated into the 3D data sets through
the head is automatically segmented. Then, a mesh is cre- trilinear interpolation. The changes in the BOLD contrast
ated with the marching cubes algorithm [25] to model the associated with the performance were assessed on a pixel-by-
outer head surface. The ventricles are segmented semiau- pixel basis with a multivariate linear model [32]. Language
tomatically using the ITKSnap region-growing segmenta- regions were identified using a combination of three tasks:
tion method [26]. First, a coarse estimate of the ventricles is visual verb generation, visual sentence generation, and audi-
defined manually and then automatically refined. The blood tory verb generation. Motor regions were identified in the
vessels are automatically or semiautomatically delineated for images from the patient movements of their hands, feet, and
each patient study with techniques described in [27]. Briefly, tongue. A senior neurosurgeon (YS) verified that the resulted
the method starts with the automatic watershed-based seg- regions do indeed match the known anatomy.
mentation of large blood vessels and the construction of an a
priori intensity probability distribution function for smaller Trajectory planning methods
ones. The blood vessels are then segmented with a graph
min-cut method based on an edge weighting function that We implemented the manual method, the visualization
adaptively couples voxel intensity, intensity prior, and local method, and the automatic method to explore the trade-offs
vesselness shape prior. The segmentation of all structures was involved in the trajectory planning decision-making process.
manually revised and verified by a senior neurosurgeon (YS) The manual method consists of manually selecting an
by overlaying the relevant clinical images on the segmented entry point directly on the axial, coronal, and sagittal views
areas. of the T1-Gd scan and examining the resulting surgical tra-
jectory. This is the conventional planning method—it serves
Candidate entry areas as the control reference for the other methods.
The visualization method consists of selecting an entry
The outer head surface was further edited to constraint the point on the head surface and evaluating the resulting tra-
optimal trajectory for clinically acceptable areas. The face jectory on the T1-Gd scan augmented with overlays of the
and ears zones were manually excluded. Then, the surface segmented anatomical and functional structures. The struc-
above the hemisphere that is contralateral to the target was tures include the candidate entry points region, the blood ves-
removed to avoid cross-hemispheric trajectories. Finally, the sels with diameter >1 mm, and the ventricles from the T1-Gd
anterior–inferior head surface was removed to avoid the cere- scans, the white matter fibers tractography from the DTI scan,

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and the functional motor, visual, sensory, and speech areas value was computed for each candidate trajectory (e.g., a pair
from fMRI scans (Fig. 2). The rationale for this method is that of entry and target points), and the three trajectories that are
the surgical trajectory planning task is facilitated by having associated with the minimal values and that are at least 2 mm
key structures from different scans highlighted in different apart were selected. The surgeon then makes the final choice
colors and integrated in a single, augmented scan which was by visual inspection of these three surgical trajectories. The
presented to the neurosurgeon. line between a candidate entry point and the target defines a
The automatic method: the relevant head surface was candidate surgical trajectory (Fig. 3). The rationale for this
evenly sampled with ∼1,000 points, each considered as a method is to automate surgical trajectory selection and to
candidate entry point to the predefined target. Then, a risk leave the final choice between the three best trajectories to
the surgeon (Figs. 4, 5).

Surgical trajectory expected risk score computation

The surgical trajectory expected risk score is an aggregate


of individual expected risk measures for all the segmented
anatomical and functional structures along the trajectory. The
score based on the proximity of the surgical trajectory to a
structure or area and on the estimated damage that may be
caused by penetrating it [12,13].
Let S = {S1 , S2 , . . . , S p } be a set of critical structures—
blood vessels, ventricles, white matter fibers tractography,
and functional areas—for which their penetration with a sur-
Fig. 3 Illustration of the candidate insertion region as defined by the gical tool is undesirable or forbidden. The structures are rep-
surgeon in the automatic method (pink) and the color-coded risk val- resented by the voxels that were identified by segmentation
ues of candidate entry points on the skull (red, high; yellow, medium; and delineation. Let R = {r1 , r2 , . . . , r p } be the expected
green, low; blue, lowest). Three trajectories (cylinders) are shown: the risk values associated with the penetration of these structures,
trajectory selected with the manual method (dark purple, outside the
selected region), the trajectory selected by the visualization method where ri = 0 indicates no expected risk and ri = 1 indicates
(light purple), and the trajectory selected with the automatic method highest expected risk (penetration is forbidden). The sum of
(yellow) the ri value is 1.

Fig. 4 Bar charts of the surgical trajectory expected risk score (left) and minimum distance from blood vessel (right) of each surgeon on the
average patient for each method (top) and for experts and trainees (bottom). The lines show the improvements between methods

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Int J CARS (2015) 10:1127–1140 1133

Fig. 5 Bar charts of the trajectory expected risk score (left) and minimum distance from blood vessels (right) of each patient on the average surgeon
for each method

The expected risk of the white matter fibers and functional of having the penetration of the surgical trajectory into one
areas is further subdivided to reflect the different risks. Since of the structure Sk is the maximum of the expected risks to
there is no consensus in the literature about the actual risk each structure. Therefore, the expected risk of trajectory tr
values for different structures, we asked the expert neurosur- is:
geon (YS) to define the values based on his experience. The
following values were predefined: blood vessels r4 = 0.4; risk(tr, riskVolume) = max (riskVolume(vi )) (1)
vi ∩tr =∅
ventricles r1 = 0.1; white matter fibers r2 = 0.2; and corti-
cal functional regions, r3 = 0.3. The risk of the white matter where vi is a voxel and riskVolume(vi ) is defined as:
fibers and cortical functional areas is further subdivided as
follows: motor fibers, f j4 = 0.4; sensory fibers, f j3 = 0.3; 
4 
4
r j · a jk
vision fibers, f j2 = 0.2; speech SLF fibers, f j1 = 0.1; riskVolume(vi ) = (2)
dist(S jk , v j ) + α
functional motor area, f a4 = 0.4; functional sensory area, j=1 k=1
f a3 = 0.2; functional vision area, f a2 = 0.1; and func-
tional speech area, f a1 = 0.3. The expected risk values where α is a nonnegative scalar constant used to avoid divi-
of the white matter fibers and the functional areas are then sion by 0 (in this study α = 1.). The weights were defined
(r2 × f i j ) and (r3 × f a j ) for j = 1, 2, 3, 4, respectively. Note by a senior neurosurgeon (YS) as follows.

that the senior neurosurgeon (YS) who determined the above ⎪
⎪ j = 1 ventricles 0.1

weights did not participate in the rest of the study. More- j = 2 white matter fibers 0.2
rj =
over, the above values were not disclosed to the participating ⎪
⎪ j = 3 functional cortical areas 0.3

neurosurgeons during the experiments to avoid bias. j = 4 blood vessels 0.4
The expected risk of having the penetration of the surgi- ⎧

⎪ j = 1 ventricles 0.25
cal trajectory into the structure is inversely proportional to ⎨
j = 2 white matter fibers fik
its minimum distance from it, weighted by its expected risk a jk =

⎪ j = 3 functional cortical areas f ak
value. The expected risk of having the penetration of the sur- ⎩
j = 4 blood vessels 0.25
gical trajectory into one of the structure is the maximum of
the expected risks to each structure. and

Let tr i = [ei , t] be a surgical trajectory with entry point ⎪ j = 1 speech fibers 0.1


ei and target t. Let V = {v1 , . . . , vn } be the set of voxels j = 2 vision fibers 0.2
fik =
intersected by the surgical trajectory. Let be the minimum ⎪
⎪ j = 3 sensory fibers 0.3
distance between the center of voxel v j intersected by the ⎩
j = 4 motor fibers 0.4
surgical trajectory tr i and structure Sk . The expected risk ⎧

⎪ j = 1 speech areas 0.3
of having the penetration of the surgical trajectory into the ⎨
j = 2 vision areas 0.1
structure Sk is inversely proportional to its minimum distance f ak =

⎪ j = 3 sensory areas 0.2
from it, weighted by its expected risk value. The expected risk ⎩
j = 4 motor areas 0.4

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1134 Int J CARS (2015) 10:1127–1140


⎪ j = 1 ventricles (for ⎧
all k) millimeters). The expected risk score is an aggregate of the



⎪ ⎪
⎪ 1 speech expected risk of each structure and serves to compare tra-

⎪ ⎨

⎪ 2 vision jectories with a single number. The minimum distance of the

⎪ j = 2 (DTI) , k =

⎪ ⎪ 3 sensory

⎨ ⎪
⎩ surgical trajectory to the brain structures has a physical mean-
S jk = ⎧4 motor ing and is directly related to the intraoperative accuracy of the

⎪ ⎪
⎪ 1 speech needle insertion method. We differentiate between blood ves-

⎪ ⎨

⎪ 2 vision sels and other structures because of their clinical significance:

⎪ j = 3 (fMRI), k =

⎪ ⎪ 3 sensory
⎪ penetrating a blood vessel during closed surgery should be

⎪ ⎩

⎪ 4 motor avoided, as it may cause hemorrhagic complications. More-

j = 4 blood vessels (for all k) over, the blood vessels densely span the entire brain, so the
minimum distance of the surgical trajectories to them is usu-
Equation 2 reflects the hierarchical subdivision of the risk ally much smaller to that of the other structures.
factors. Index j denotes the four major risk factors: blood The relative measurements for two surgical trajectories are
vessels, cortical functional areas, functional fibers, and ven- as follows: (1) the trajectories expected risk score ratio (>0),
tricles. The functional cortical areas (fMRI) and fibers (DTI) and (2) the difference between the two trajectories minimum
are further subdivided into motor, sensory, vision and speech distance from blood vessels (in millimeters). The expected
areas that are denoted by index k. risk score ratio measures the significance of the risk improve-
The riskVolume is precomputed once on the entire seg- ment (<1) or worsening (>1), while the difference measures
mented images. Each voxel is associated with an expected the improvement (>0) or worsening (<0) of the minimum
risk value that is directly related to the estimated conse- distance to blood vessels.
quences and severity of the damage to the corresponding The measurements are organized in a 5×8×3 table (5 sur-
brain tissue/structure. The expected risk associated with geons, 8 targets, 3 methods) consisting of 120 entries. Each
each surgical trajectory is then directly computed from the entry corresponds to a surgical trajectory planned/evaluated
expected risk volume voxels that intersect the trajectory. by surgeon i on target j with method k. Each entry includes
Which risk function best represents the actual risk associ- the individual measurements (risk score, minimum distance
ated with each trajectory is a key open question. We believe to blood vessels, and minimum distance to other structures).
that any function that combines the multiple factors into a
single risk number is deemed to only partially reflect the real Data analysis methodology
risk. Thus, it should be taken as a recommendation only, and
a careful examination of the images is still necessary. The We aggregate the study measurements data and report them
function we present in this study was carefully designed to in five categories as follows.
best represent the risk associated with each trajectory. Specif-
ically, we selected α = 1 such that the maximal risk value 1. By surgeon and by patient: we analyze the performance
is 1. Setting an upper bound to the risk value is important for each patient and each surgeon for each trajectory plan-
for interpretation of the risk value and for its visualization. ning method. We report the aggregate expected risk score
Moreover, it does not lead to the misclassification of safe and the minimum distance from the blood vessels for each
or high-risk trajectories as suggested by the reviewer. For surgeon, patient, and method. We also analyze the perfor-
example, assume that a chosen trajectory is 2 mm from a mance improvement for each patient and for each type of
blood vessel (risk value of 0.4) and assume that the trajec- surgeon for the segmentation and automatic method with
tory is far from the other structures such that they can be respect to the manual method.
neglected. In this case, the trajectory has a trajectory risk 2. By surgeon only: we report the performance of each
value of 0.2 (= 0.4/2). Therefore, trajectories whose risk surgeon on the average patient for each method. We
value is 0.2 or greater may present a high risk. report the mean expected risk score and the mean min-
imum distance from the blood vessels for all eight
Surgical trajectories measurements patients. We also report these measures by the type of sur-
geon (expert/trainee) and report the expected risk score
We define individual measurements to quantify the expected improvements by surgeon for the manual/visualization
risk of a surgical trajectory and relative measurements to and manual/automatic methods.
compare two surgical trajectories. The individual measure- 3. By patient and target: we analyze the performance of the
ments for a surgical trajectory are as follows: (1) its expected average surgeon for each patient and for each trajectory
risk score (0 no risk, 1 maximal risk); (2) its minimum dis- planning method. We report the mean expected risk score
tance from blood vessels (in millimeters); and (3) its min- and the mean minimum distance from the blood vessels
imum distance from structures other than blood vessels (in for all eight patients. We also report these measures by the

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Table 2 Manual method—risk scores (above) and minimum distance from blood vessels (below) for each surgeon and for each patient
Risk value (mm) P1 P2 P3 P4 P5 P6 P7 P8 Avg (SD)

Exp1 0.13 0.34 0.28 0.32 0.46 0.35 0.55 0.19 0.33 (0.14)
0.0 1.7 2.7 0.7 0.0 0.0 0.0 2.8 1.0 (1.2)
Exp2 0.09 0.47 0.17 0.21 0.60 0.37 0.36 0.02 0.29 (0.20)
0.6 6.1 0.0 3.3 0.0 0.0 0.0 0.0 1.3 (2.3)
Tra1 0.12 0.82 0.39 0.62 0.58 0.56 0.45 0.04 0.45 (0.26)
0.0 0.0 0.0 0.0 0.0 0.0 0.0 1.5 0.2 (0.5)
Tra2 0.15 1.00 0.58 0.42 0.46 1.00 0.61 0.10 0.54 (0.34)
0.4 0.0 0.0 0.1 0.1 0.0 0.0 0.0 0.1 (0.1)
Tra3 0.15 0.60 0.53 0.26 0.48 1.00 0.10 0.18 0.41 (0.30)
0.0 4.9 0.0 0.0 0.0 0.0 1.0 0.0 0.7 (1.7)
Experts (SD) 0.11 (0.03) 0.41 (0.09) 0.22 (0.07) 0.27 (0.08) 0.53 (0.10) 0.36 (0.01) 0.46 (0.14) 0.10 (0.12) 0.31 (0.16)
0.3 (0.4) 3.9 (3.1) 1.4 (1.9) 2.0 (1.8) 0.0 (0.0) 0.0 (0.0) 0.0 (0.0) 1.4 (2.0) 1.1 (1.4)
Trainees (SD) 0.14 (0.02) 0.81 (0.20) 0.50 (0.10) 0.43 (0.18) 0.51 (0.07) 0.85 (0.26) 0.39 (0.26) 0.10 (0.07) 0.47 (0.27)
0.1 (0.2) 1.6 (2.8) 0.0 (0.0) 0.0 (0.1) 0.0 (0.1) 0.0 (0.0) 0.3 (0.6) 0.5 (0.9) 0.3 (0.6)
All surgeons (SD) 0.13 (0.03) 0.65 (0.26) 0.39 (0.17) 0.37 (0.16) 0.52 (0.07) 0.66 (0.32) 0.42 (0.20) 0.10 (0.08) 0.40 (0.21)
0.2 (0.3) 2.5 (2.8) 0.5 (1.2) 0.8 (1.4) 0.0 (0.0) 0.0 (0.00) 0.2 (0.5) 0.9 (1.3) 0.7 (0.84)
The last three rows show the scores for the experts, for the trainees, and for all surgeons

type of patient/target. We report the expected risk score aview [36] was used for the candidate entry point’s region
improvement by patient for the manual/visualization and definition. The data analysis was performed with MATLAB
manual/automatic methods. [37].
4. Structures other than blood vessels: we analyze the effect
that each trajectory planning method has on the minimum Results
distance between the planned trajectories and the struc-
tures and functional regions other than blood vessels. Tables 2 and 3 report the results for each surgeon and each
5. Selection of surgical trajectories: we analyze the influ- patient, the performance of the manual and the automatic
ence of the trajectory planning methods on the surgeons’ methods, respectively (first five rows). They also report the
choice of surgical trajectory. We report how many times results for the expert and trainee groups, and for all surgeons
the trajectory was changed as a result of using a partic- (following three rows). We report the performance of each
ular planning method. We also analyze the variability of surgeon and type of surgeon on the average patient/target for
the selected trajectories by surgeon, patient, and trajec- each trajectory planning method (last column).
tory planning method. The distance between their entry
points determines the variability between two surgical
By surgeon and by patient
trajectories.
The expected risk score and minimum distance from blood
Software prototype vessels improvements from the manual to the automatic
method are 75.7 % (SD = 11.6 %, p < 0.05, two-sample
We have developed a preoperative trajectory planning soft- student’s t test) and 1.6 mm (SD = 1.3 mm, p < 0.05). The
ware prototype for the purposes of the study. It is based on corresponding improvements from the manual to the visu-
the medical imaging interaction toolkit (MITK), which inte- alization method are 32.1% (SD = 23.3 %, p < 0.05) and
grates the Insight Toolkit (ITK) and the Visualization Toolkit 0.1 mm (SD = 0.46 mm, p = 0.56).
(VTK) [33–35] on a PC running Windows 7. The software
prototype includes the following functions: (1) visualization By surgeon
of scans, segmentation, color-coded trajectories, and color-
coded candidate entry points on 2D axial, coronal, and sagit- The expected risk score and minimum distance from blood
tal slices and in 3D; (2) interactive selection of targets and vessels improvements from the manual to the automatic
candidate entry points regions; and (3) minimum distance method for experts are 78.8 % (SD = 18.4 %, p < 0.05) and
from structures and trajectory risk score computation. Par- 1.2 mm (SD = 1.4 mm, p = 0.13), respectively; for trainees,

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Table 3 Automatic method—risk scores (above) and minimum distance from blood vessels (below) for each surgeon and for each patient
Risk values (mm) P1 P2 P3 P4 P5 P6 P7 P8 Avg (SD)

Exp1 0.08 0.01 0.01 0.16 0.00 0.13 0.05 0.00 0.06 (0.06)
0.1 3.7 3.0 0.4 2.6 0.6 1.6 2.8 1.9 (1.4)
Exp2 0.03 0.15 0.17 0.18 0.00 0.36 0.05 0.02 0.12 (0.12)
1.3 3.6 5.0 1.3 2.6 3.0 1.6 3.6 2.8 (1.3)
Tra1 0.05 0.15 0.01 0.18 0.00 0.13 0.06 0.04 0.08 (0.07)
0.1 3.7 5.2 1.5 2.6 3.0 1.6 1.5 2.4 (1.6)
Tra2 0.00 0.65 0.10 0.19 0.00 0.24 0.07 0.05 0.16 (0.22)
1.3 0.1 3.0 1.5 2.6 1.0 1.1 2.7 1.7 (1.0)
Tra3 0.12 0.15 0.04 0.11 0.00 0.04 0.03 0.00 0.06 (0.06)
0.1 2.8 5.3 0.2 2.6 3.8 1.5 3.6 2.5 (1.8)
Experts (SD) 0.05 (0.03) 0.08 (0.10) 0.09 (0.12) 0.17 (0.01) 0.00 (0.00) 0.25 (0.16) 0.05 (0.00) 0.01 (0.01) 0.09 (0.08)
0.7 (0.9) 3.7 (0.1) 4.0 (1.4) 0.8 (0.7) 2.6 (0.0) 1.8 (1.7) 1.6 (0.0) 3.2 (0.6) 2.3 (1.3)
Trainees (SD) 0.06 (0.06) 0.32 (0.29) 0.05 (0.05) 0.16 (0.05) 0.00 (0.00) 0.14 (0.10) 0.06 (0.02) 0.03 (0.02) 0.10 (0.10)
0.5 (0.7) 2.2 (1.9) 4.5 (1.3) 1.1 (0.7) 2.6 (0.0) 2.6 (1.4) 1.4 (0.3) 2.6 (1.1) 2.2 (1.2)
All surgeons (SD) 0.06 (0.05) 0.22 (0.25) 0.07 (0.07) 0.17 (0.03) 0.00 (0.00) 0.18 (0.12) 0.05 (0.01) 0.02 (0.02) 0.10 (0.08)
0.6 (0.7) 2.8 (1.5) 4.3 (1.2) 1.0 (0.6) 2.6 (0.0) 2.3 (1.4) 1.5 (0.2) 2.8 (0.9) 2.2 (1.2)
The last three rows show the scores for the experts, for the trainees, and for all surgeons

the improvements are 87.1 % (SD = 3.7 %, p < 0.05) and For the automatic method, the minimum distance from
1.9 mm (SD = 1.4 mm, p < 0.05), respectively. The average function-related areas increased to 20.1 mm (SD = 4.5 mm)
corresponding improvements from the manual to the visual- —motor activation areas 23.2 mm, somatosensory activa-
ization method for experts are 18.3 % and 0.0 mm, respec- tion areas 14.8 mm, speech-related areas 24.3 mm, and visual
tively; for trainees, the improvements are 49.8 % and 0.2 mm, activation areas 18.1 mm. For white matter fibers tractogra-
respectively. phy, the minimum distance increased to 10.5 mm (SD =
3.6 mm)—pyramidal tract 13.1 mm, somatosensory fibers
By patient and target 12.9 mm, superior longitudinal fasciculus 10.6 mm, and optic
radiation 5.4 mm. The minimum distance from the ventri-
The expected risk score improvements from the manual to cles increased to 10.1 mm (SD = 5.9 mm). The overall
the automatic method was significant ( p < 0.05) and ranged improvement from the manual to the automatic methods is
from 0.1 (SD = 0.08) to 0.02 (SD = 0.02) for patient 3.4 mm ( p = 0.34) for the function-related areas and 2.3 mm
P8, an improvement of 400 %, and 0.66 (SD = 0.32) to ( p < 0.05) for the white matter fibers tractography.
0.18 (SD = 0.12) for patient P6, an improvement of 266 %.
For minimum distance from blood vessels the improvements Selection of surgical trajectories
were also significant ( p < 0.05) and ranged from 2.5 mm
(SD = 2.8 mm) to 2.8 mm (SD = 1.5 mm). We report on the change of the selected surgical trajec-
tory between methods: From the manual to the visualization
Distance from eloquent brain areas and the ventricular method, 19 out of 40 (47.5 %) trajectories were changed, and
system from the visualization to the automatic method 34 out of 40
(85 %) were changed. The expected risk score improvement
For the manual method, the minimum distance from function- increased more when trajectories were changed (77.9 %) than
related areas is 16.7 mm (SD = 4.9)—motor activation when no changes were made (58.6 %). Of the trajectories
areas 16.9 mm, somatosensory activation areas 10.5 mm, that did change, the average distance between entry points
speech-related areas 22.5 mm, and visual activation areas is 11.6 mm (SD = 5.1 mm, p < 0.05) for manual to visu-
16.7 mm; for the white matter fibers tractography, it is 8.2 mm alization, 18.3 mm (SD = 9.6 mm, p = 0.28) for visual-
(SD = 2.8 mm)—pyramidal tract 9.7 mm, somatosensory ization to automatic. For the experts, the mean entry point
fibers 10.4 mm, superior longitudinal fasciculus 8.4 mm, and distance changes were 7.1 and 10.5 mm for the visualization
optic radiation 4.1 mm. The minimum distance from the ven- and automatic method, respectively, and 14.6 and 12.5 mm
tricles is 12.6 mm (SD = 7.19 mm). for the trainees, respectively.

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Discussion cant in the clinical sense since the initial trajectory is already
very safe. However, in others, the improvement is of clinical
Our results support our initial hypotheses and shed light on importance and otherwise was not identified by any of the
closely related issues. We discuss them next. five surgeons. For example, the average minimum distance
from blood vessels is 0.0 mm (SD = 0.0) for patient P6 for
Minimum distance from blood vessels the manual and the visualization methods. It is increased to
2.3 mm with the automatic method—this means that in some
The minimum distance from blood vessels and the aggre- cases it may be difficult even for an experience neurosurgeon
gate expected risk score may be good measures to quantify to identify blood vessels along the planned trajectory, and by
the expected risk of a surgical trajectory. The initial surgical using the software, potential injury to blood vessels might be
trajectories were changed in 85 % of the cases based on the avoided.
expected risk score and the minimum distance from blood
vessels. Since the final surgical trajectories were all vali- Utility of computer-assisted trajectory planning
dated and retained after the selection, this suggests that the
measures capture the concept of expected risk appropriately. There is a consistent and significant reduction ( p < 0.05)
In addition, our study results show that the most important of the expected risk score and its variability and of the min-
structures in surgical trajectory planning are the blood ves- imum distance to blood vessels and its variability for the
sels. While functional areas and white matter fibers tractog- two advanced computer-assisted trajectory planning meth-
raphy information can be useful in some cases, the expected ods with respect to the manual method. The expected risk
risk of most surgical trajectories is dominated by the proxim- scores and minimum distance from blood vessels improved
ity to blood vessels. Still, the automatic method decreased the from 0.24 and 0.7 mm, for the visualization method, to 0.06
expected risk score and increased the minimum distance from and 2.2 mm for the automatic method, for an overall improve-
blood vessels in all cases. These observations are consistent ment of 75.7 % and 2.2 mm with respect to the manual selec-
with recently published studies on deep brain stimulation tion method. There was no significant difference between the
[5,7,9–11,21] and stereo-electroencephalography [20]. automatic (final) expected risk score and minimum distance
from blood vessels for experts and trainees: expected final
Conventional method evaluation risk score and minimum distance to blood vessels of 0.09
(SD = 0.08) and 2.3 mm (SD = 1.26) for experts, and 0.10
For the manual (conventional) method, significant differ- (SD = 0.10) and 2.2 mm (SD = 1.2) for trainees. In all
ences in the selection of the entry point and its associated cases, the automatic computation of the three safest trajec-
surgical trajectory were found. The variability of the associ- tories consistently outperforms the expected risk of surgical
ated expected risk score across surgeons and targets inside trajectories selected manually by all surgeons.
the brain suggests that there is sometimes a lack of consensus
between surgeons as to what constitutes the safest surgical Experts versus trainees
trajectory. We found significant differences ( p < 0.05, stu-
dent’s two-sample t test) in the manual (initial) expected risk The improvements were more significant for trainees than
scores and the minimum distance from blood vessels between for experts. The expected risk score and minimum distance
experts (0.31 and 1.1 mm) and trainees (0.46 and 0.3 mm). from blood vessels improvement between the manual and
the visualization method was modest for experts, 18.3 % and
Surgical trajectory variability larger for trainees, 49.8 %. However, the improvement from
the manual to the automatic method was 78.8 % and 1.2 mm
We observe that the location of the surgical trajectories varies for experts, and 87.1 % and 1.9 mm for trainees.
from patient to patient. For some patients, the manual (ini- The main difference between experts and trainees appears
tial) planned trajectory is nearly the same across surgeons to be the ability to identify and mentally reconstruct the 3D
(patient P1, risk score SD = 0.03, minimum distance from structure of the blood vessels—this is reflected in the differ-
blood vessels SD = 0.3 mm). For others, the differences are ence of improvement in the expected risk score from manual
significant (patient P2, risk score SD = 0.3, patient P2, mini- to the visualization methods in each group. In some cases,
mum distance from blood vessels SD = 2.8 mm). The extent it is the delineation of the blood vessels that eliminates the
to which the safety of a surgical trajectory can be improved blood vessel penetration. In others, it is the quantification of
also varies between patients. In some cases, the improve- the expected risk score that makes the significant difference
ment is only modest—patient P8, risk score improvement (patient P2, the expected risk score decreased from 0.48 to
from 0.1 to 0.02, and for patient P6, minimum distance from 0.23). Finally, in other cases, the automatic method yields a
blood vessels improvement 2.5–2.8 mm, which is not signifi- significantly different safest surgical trajectory (patient P5,

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minimum distance from blood vessels improved from 0.2 to most of the smaller blood vessels (<1 mm) will reside
1.5 mm). near the larger one (>1 mm) in comparison with other
areas. Therefore, a trajectory that is as far as possible
Risk quantification from a large blood vessel is probably also as far as pos-
sible from brain areas with dense smaller blood vessels.
Currently, there is no consensus among neurosurgeons as 3. Brain shift: our surgical trajectory planning methods, as
to weather the expected risk can be quantified. Indeed, the well as all others [5,7,9,10,20,21], assume that the brain
neurosurgical considerations involved in the choice of the structures are rigid and do not deform as the surgical
surgical trajectory are vast and complex, including the sever- instrument is inserted. This is of course an idealization,
ity of a deficit, the likelihood of the permanence of a deficit, as the brain tissue deformation can either bring structures
the expected quality of life of the patient after surgery, and closer to the instrument or further away from it.
many more. Thus, there is no “gold standard” to which the 4. Accuracy: the clinically meaningful trajectory planning
results of computer-aided surgical trajectory planning can be accuracy depends on the MR scan resolution, the accu-
compared. However, there is consensus that the larger the racy of the scans co-registration, the intraoperative reg-
minimum distance from the blood vessels and other struc- istration accuracy, and the accuracy of the insertion
tures or areas is, the safer is the surgical trajectory. Thus, method (stereotactic, navigated, robotic). Published stud-
all the published methods to date quantify risk as weighted ies including ours [6,20,21,30] indicate that the thresh-
inversely proportional to the distances from the structures, old is 0.5–1.0 mm. Thus, trajectory safety improvements
although there is no consensus among neurosurgeons on the below 0.5–1 mm will most likely have no practical mean-
expected risk score function and weights. Clearly, different ing in clinical practice. Still, the method serves as an addi-
weights will lead to somewhat different results. Therefore, tional validation to increase the surgeon’s confidence in
we report all our results both in terms of the expected risk the planned trajectory and an automated “second opin-
scores and the minimum distance from the blood vessels and ion” for the expected risk.
other structures or areas. Our assumptions should be assessed 5. Validation: our study, as well as all those published in
clinically by future utilization of the automated technique in the literature [20,21,30], are retrospective and do not
a series of cases and compared to a control cohort prior to its directly assesses the clinical benefit of computer-assisted
implementation. surgical trajectory planning. In the future, a controlled
The limitations of our study are as follows. prospective blind study should be conducted to evaluate
whether, indeed, the trajectories selected by our or similar
1. Study size: the number of patients and targets is rela- computer-based methods resulted in less complications
tively small (eight), while the number of neurosurgeons and better surgical outcomes. A retrospective postoper-
is acceptable (two experts, three trainees). A larger study ative comparison between the actual and planned trajec-
size would allow for more definitive conclusions. How- tories may provide preliminary insights. For example, if
ever, the patients and targets were carefully chosen to actual trajectories that were closer to the automatically
represent a wide spectrum of clinical scenarios; also, the planned ones can be associated with better outcomes,
improvements were significant enough to provide a basis this would be strong evidence in favor of the automated
for the hypotheses. methods.
2. Segmentations: our methods depend on the availability
and quality of segmentation corresponding to the head
surface, ventricles, blood vessels, high-density white Conclusion
matter fibers tractography, and functional areas delin-
eation. Automatic methods for head surface and ven- Our study indicates that computer-based surgical trajectory
tricles segmentation are readily available and yield reli- planning may play an important role in improving the safety
able results. However, the segmentation of blood vessels, of image-based stereotactic neurosurgery. The study indi-
especially small ones, from MRI scans is more challeng- cates that the computation of the minimum distance from
ing. It usually requires a semiautomatic segmentation blood vessels and other eloquent structures may provide a
method and surgeon validation, which may be error prone valuable tool for the quantification of the expected surgical
and time consuming [21]. Moreover, it may be impossi- risk of hemorrhage and neurological damage due to incorrect
ble to extract blood vessels with a diameter that is smaller tool placement.
than the image resolution. Therefore, some of the risk of Our study shows that for certain patients and targets, there
hemorrhage in intracranial stereotactic procedures may are significant differences in the manual selection of the entry
be unaccounted for. However, because of the branching point and its associated surgical trajectory. The differences
anatomy of the intracranial blood vessels, it is likely that most likely stem from the surgeon’s experience and ability to

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Int J CARS (2015) 10:1127–1140 1139

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The authors have no personal financial or institutional interest in any of oElectroEncephaloGraphy (SEEG). Int J CARS (2014) 9:1087–
the materials, software, or devices described in this article. 1097. doi:10.1007/s11548-014-1004-1
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