Download as pdf or txt
Download as pdf or txt
You are on page 1of 9

Analytica Chimica Acta 1092 (2019) 66e74

Contents lists available at ScienceDirect

Analytica Chimica Acta


journal homepage: www.elsevier.com/locate/aca

An enzyme-free electrochemical biosensor for simultaneous detection


of two hemophilia A biomarkers: Combining target recycling with
quantum dots-encapsulated metal-organic frameworks for signal
amplification
H. Rezaei a, M. Motovali-bashi a, *, S. Radfar b
a
Genetics Division, Biology Department, Faculty of Sciences, University of Isfahan, Isfahan, 81746-73441, Iran
b
Department of Chemistry, Faculty of Sciences, Najafabad Branch, Islamic Azad University, Najafabad, Esfahan, P.O. Box: 517, Iran

h i g h l i g h t s g r a p h i c a l a b s t r a c t

 A novel biosensor for simultaneous


detection of two hemophilia A-
related microRNAs was fabricated for
the first time.
 The sensitivity of the proposed
biosensor using QDs@ZIF-8 as signal
tags is about 15 times that of a
biosensor using QDs.
 The DPV response was intensified by
QDs@ZIF-8 and catalytic hairpin as-
sembly to acquire LOD of 0.19 fM.
 Biosensor in enzyme-free detection
showed the good linear ranges of 1
fM to 1mM.
 Biosensor could highly specify ds-
RNA from the 1-base mismatch and
non-complementary targets.

a r t i c l e i n f o a b s t r a c t

Article history: A sensitive and selective electrochemical method for simultaneous detection of two hemophilia A-
Received 18 May 2019 related microRNAs (miR-1246 and miR-4521) was developed. This detection tactic was based on gold
Received in revised form nanoparticles (AuNPs), heavy metals quantum dots-encapsulated metal-organic frameworks (QDs@ZIF-
28 August 2019
8), and catalytic hairpin assembly (CHA) for signal application. Primarily, hairpins H1 and H2 were hy-
Accepted 12 September 2019
bridized with targets miR-1246 (T1) and miR-4521 (T2) for forming H1-T1 and H2-T2 duplex stranded
Available online 16 September 2019
DNAs (dsDNAs) that were able to open the hairpins H3 and H4 for the formation of H1eH3 and H2eH4
dsDNAs. Meanwhile, lots of H1eH3 and H2eH4 dsDNAs were created by releasing the target to take part
Keywords:
microRNAs
in the next cycle for signal amplification. And then single stranded fragments of H1eH3 and H2eH4
Hemophilia A dsDNAs were utilized for hybridizing the PbS@ZIF-8-S1 and CdS@ZIF-8-S2 in order to amplify the
Metal-organic frameworks electrochemical signal. The diagnosis of corresponding target miRs using differential pulse voltammetry
Electrochemical biosensor has been possible by releasing Pb (II) and Cd (II) ions from PbS@ZIF-8 and CdS@ZIF-8 tags by HCI
Heavy metal quantum dots leaching. In this context, encapsulation of heavy metals quantum dots (QDs) was done in zeolitic imi-
Catalytic hairpin assembly dazolate framework-8 (ZIF-8) to form QDs@ZIF-8 muti-core-shell particles by in situ growth of ZIF-8 in
the presence of QDs. Since the quantity of QDs tagged to each target miRs grows massively, being
resulted from a huge number of QDs that encapsulated in each QDs@ZIF-8 label, the sensitivity of the

* Corresponding author.
E-mail address: mbashi@sci.ui.ac.ir (M. Motovali-bashi).

https://doi.org/10.1016/j.aca.2019.09.037
0003-2670/© 2019 Elsevier B.V. All rights reserved.
H. Rezaei et al. / Analytica Chimica Acta 1092 (2019) 66e74 67

biosensor using QDs@ZIF-8 particles as signal tags is about 15 times that of a biosensor using QDs as
signal tags. Several conditions of determination like incubation time for labeling and capture probe, HCl
leaching time, and reaction time of CHA were optimized. Under the optimized conditions, this assay
allowed the detection of target miRs in the range of 1 fM to 1 mM with detection limits of 0.19 fM and
0.28 fM for miR-1246 and miR-4521 (S/N ¼ 3). The biosensor can discriminate complementary, 1-base
mismatched and non-complementary sequences quite well, according to the catalytic hairpin assem-
bly. Furthermore, the biosensor was utilized efficiently for quick and direct analysis of microRNAs in
human serum. Thus, this tactic presents an innovative platform for microRNAs expression profiling in
biomedical research and clinical diagnosis.
© 2019 Elsevier B.V. All rights reserved.

1. Introduction methods, chemiluminescence technology, and capillary electro-


phoresis assays have been developed [13e19]. Since electro-
Hemophilia A (HA) is an X-linked bleeding disorder that in- chemical (EC) biosensors have special features like easy utilization,
fluences 1 in 5000e10000 live male birth and is caused by deletion reasonable sensitivity, requiring few samples, non-toxic experi-
and/or mutation in the coagulation factor VIII (FVIII) gene [1]. mental steps, short assay time, quick detection, low detection limit,
This X-linked bleeding disorder can be treated in an effective low cost, and appropriate operation, there have been more atten-
way by infusing plasma-derived-or recombinant-FVIII [2] quite tion to them. Both miRNA labeling and label-free are involved in EC
regularly. However; the expansion of anti-drug antibodies which techniques [20,21].
inhibits FVIII function (inhibitors) and resides in 30% of patients, is One of the most hopeful strategies by target DNA opening a DNA
an important obstacle for the treatment being fruitful [3,4]. hairpin and after that being released by other DNA hairpins to gain
Although there have been lots of developments in the FVIII the target recycling for signal amplification [22,23], which is called
drug-products, like the advent of recombinant and bioengineered catalytic hairpin assembly (CHA), has had great attentions recently.
products since twenty years ago, the outbreak of inhibitors among CHA, as an enzyme-free amplification tactic, either is able to facil-
HA patients [5] has faced no reduction. Some genetics factors that itate the detection conditions and reduce the costs, or to exhibit a
are affiliated with the risk of inhibitor expansion [6] include posi- negligible background which shows that it is a proper method to
tive family history of inhibitors, ethnicity, FVIII genotype and expand enzyme-free isothermal amplification strategies.
certain polymorphisms in immune modulatory genes (IL-10 and Ultrahigh porosity and large surface areas are provided in metal
TNFa). organic frameworks (MOFs), which include inorganic metal ions/
In addition, quantities of non-genetics factors that affect the clusters and organic ligands [24e29]. Since composite materials
sensitivity of patients to expand inhibitors are as; age at first represent superior properties to those of the individual compo-
treatment, intensity of treatment, continuous infusion [7]. nents for different functions, there have been special concerns to
Despite the main unpredictability of this intricacy, the infor- the encapsulation of nanomaterials in MOFs to form composite
mation of several major risk factors are causing the classification of materials [30,31]. There are lots of fields, in which Quantum dots
individual patient risk of inhibitor development at the start of (QDs) with unique electrical and optical properties are used such as
replacement therapy and development in prohibition tactics. solar photon conversion, biological imaging, photocatalysis, and
The balanced expression of genes encoding cytokines, tran- optical sensors [32e34]. Several QDs have been encapsulated in
scription factors or other regulatory proteins and also microRNAs MOFs in order to improve the consistency and modulate the optical
(miRNAs) regulate the expansion and application of immune sys- properties of QDs [35]. In recent years, there have been lots of at-
tem. MiRNAs act exactly like a part of complicated gene regulatory tentions regarding the optical properties of QDs-encapsulated
networks [8,9] that are endogenous single-stranded non-coding MOFs, but the electrochemical application of QDs-encapsulated
RNAs, 18e25 nucleotide-long which mediate transcriptional and MOFs has been studied scarcely.
post-transcriptional control of target gene expression. Altered Here in, an ultrasensitive electrochemical genosensor based on
expression of miRNAs in HA patients being compared to control, Au nanoparticles, PbS and CdS QDs encapsulated ZIF-8 particles as
suggest that miRNAs can deliver modern clinical, and non-invasive signal-amplifying tags, and CHA-induced target recycling is fabri-
biomarkers being used for the diagnosis, prognosis or effective cated for the simultaneous detection of miR-1246 and miR-4521 in
remedy of HA. This issue has been proved by several findings and one single experiment (Scheme 1). The improvement in electrode
reports [10,11]. MiR-1246, and miR-4521, which were described conductivity and the rise in its active surface can be resulted from
between HA patients with inhibitor development (HAI), hemo- AuNPs. In order to form H1-T1 and H2-T2 dsDNAs, targets T1 and T2
philia A patients without inhibitor development (HAWI), and hybridized with hairpins H1 and H2. This can open the hairpins H3
control (C), are two relative miRNAs that have been displayed to be and H4 for the formations of H1eH3 and H2eH4 dsDNAs.
affiliated with HA [12]. Meantime, to make lots of H1eH3 and H2eH4 dsDNA for signal
In order to detect the miRNAs, those analysis that are done by amplification, the targets were released to take part in the next
the use of formal techniques like RNA sequencing, quantitative cycle. After that, the part of the H1eH3 and H2eH4 dsDNAs that
Reverse-Transcriptase Polymerase Chain Reaction (qRT-PCR), has been emerged recently can bind with signaling DNA1 (S1) and
microarrays, and Northern blotting will have big challenges which signaling DNA2 (S2) which labeled the PbS@ZIF-8 and CdS@ZIF-8.
are compelled by low expression levels, high sequence similarity, HCl leaching can dissolve these signal-amplifying tags and release
and their small size. Pb(II) and Cd(II) ions in order to enable the detection of corre-
Therefore, in order to improve the sensitivity and flexibility of sponding target miRs by differential pulse voltammetry (DPV). Due
detection, novel strategies like colorimetric measurement, fluo- to the encapsulation of a big number of QDs in each QDs@ZIF-8
rescence detection, surface plasmon resonance, electrochemical label, the quantity of QDs labeled to each target miRs had a
detection, bioluminescence technology, electrochemiluminescence massive rise. So, the electrochemical signals were amplified
68 H. Rezaei et al. / Analytica Chimica Acta 1092 (2019) 66e74

Scheme 1. Schematic diagram of the fabrication process of a biosensor.

enormously with the use of QDs@ZIF-8 particles as signal tags. In solutions, they have been diluted using ultrapure water and kept in
situ growth of ZIF-8 in the presence of QDs prepared QDs@ZIF-8 a refrigerator.
muti-core-shell particles that were proved by high resolution Streptavidin protein (SA), cadmium chloride (CdCl2), lead chlo-
transmission electron microscopy (HRTEM), powder X-ray diffrac- ride (PbCl2), sodium sulfide (Na2S), glutaraldehyde (GLU), alumina,
tion (PXRD), energy dispersive X-ray (EDX) elemental mapping, Sodium chloride (NaCl), Tetrachloroauric(III) acid (HAuCl4), and
atomic absorption spectrometry (AAS), and fluorescence hexanethiol (96%, HT) were purchased from Sigma-Aldrich. Strep-
spectroscopy. tavidin protein (SA), cadmium chloride (CdCl2), lead chloride (PbCl2),
The biosensor can distinguish complementary and base mis- sodium sulfide (Na2S), glutaraldehyde (GLU), alumina, Sodium
matched sequences quite well according to the locked nucleic acids chloride (NaCl), Tetrachloroauric(III) acid (HAuCl4), and hexanethiol
(LNA) incorporated probe and catalytic hairpin assembly. As far as it (96%, HT) were purchased from Sigma-Aldrich. Mercaptoacetic acid,
is known, there has been no report on biosensor expansion for the sodium hydroxide (NaOH), hydrochloric acid (HCl), ethanol, 2-
simultaneous detection of these biomarkers. Accordingly, the se- methylimidazole, zinc acetate (Zn(Ac)2$H2O), p-aminobenzoic acid,
lective proposed biosensor may be highly useful for treatment ef- 1-(3-(dimethylamino)-propyl)-3-ethylcarbodiimide hydrochloride
ficacy of HA and control of inhibitors expression. (EDC), N-hydroxysuccinimide (NHS), bovine serum albumin (BSA),
branched polyethylenimine (PEI) have been achieved from Merck.
2. Experimental The procedure, through which phosphate buffer saline (PBS) with
different pH values was obtained, includes utilizing the mixture of
2.1. Instrumentation and reagents the stock solutions of NaH2PO4 and Na2HPO4 and then adjusting the
pH with 0.1 M NaOH and H3PO4. Milli-Q ultrapure water (Millipore,
All the miRNAs, LNAs and DNAs oligonucleotides of the sug- 18 MU cm) was being used all over. All reagents were analytical
gested survey (Table 1) were synthesized by Bioneer Corporation grade and without further purification.
(South Korea). In order to utilize oligonucleotides as stock TEM images were achieved utilizing a Philips TECNAI F-30

Table 1
All DNA and miRNA sequences used in the experiment.

Name sequence (50 e30 )

miR-1246 (T1) AAUGGAUUUUUGGAGCAGG


miR-4521 (T2) GCUAAGGAAGUCCUGUGCUCAG
hairpin probe H1 TTTTGGAGCAGGATGGACATGGACCTGCTCCAAAAATCCATTAGTe(CH2)6eSH
hairpin probe H2 AGTCCTGTGCUCAGTGAGTCATCTCTGAGCACAGGACTTCCTTAGCAGTe(CH2)6eSH
hairpin probe H3 ATGGACATGGATTTTGGAGCAGGTCCATGTCCATCCTGCTGAAGGAGCGACT
hairpin probe H4 TGAGTCATCTAGTCCTGTGCTCAGAGATGACTCACTGAGCAGATTCCACAAAC
Signaling DNA1(S1) NH2-(CH2)6-TTAGTCGCTCCT
Signaling DNA2 (S2) NH2-(CH2)6-TTATTTGTGGAA
single-base mismatch miRNA-1246 AAUGGAGUUUUGGAGCAGG
single-base mismatch miRNA-4521 GCUAAGAAAGUCCUGUGCUCAG
miR-21 UAGCUUAUCAGACUGAUGUUGA
H. Rezaei et al. / Analytica Chimica Acta 1092 (2019) 66e74 69

transmission electron microscope. Fourier transform infrared dispersed in 0.5 mL of PBS, stored at 4  C for future utilization.
(FTIR) spectra were recorded on AVATAR 360 FT-IR spectropho- In addition, to activate facile modification of signaling DNAs on
tometer in the range of 4000e5000 cm1. Powder X-ray diffraction QDs mercaptoacetic acid becomes capped in QDs. The procedure of
(PXRD) patterns were recorded on a Bruker D8 Advance X-ray providing PbS QDs-S1 (or CdS QDs-S2) is as follow:
diffractometer using Cu Ka radiation (l ¼ 1.5418 A), in which the X- 2 mg of MPA-PbS QDs (or MPA-CdS QDs) became dispersed in
ray tube was operated at 40 kV and 40 mA. Scanning electron mi- 1 mL of PBS containing 400 mM EDC and 100 mM NHS. After that,
croscopy (SEM) images were achieved using a JSM-6360 field the mixture, which was being stirred intensively for 60 min, was
emission scanning electron microscope. Fluorescence spectra were collected by centrifugation and cleaned by PBS and finally
recorded using an F-4600 fluorescence spectrometer (Hitachi, dispersed in 1 mL of PBS containing of 100 mg mL1 signaling DNA1
Japan). AAS measurements were done on a WFX-110A Atomic Ab- (or signaling DNA2). After intensive shaking for another 6 h, PbS
sorption Spectrophotometer. The performance of all electro- QDs-S1 (or CdS QDs-S2) were gathered by centrifugation, cleaned
chemical experiments was done on a mAutolab III (Eco Chemie B.V.) with PBS, and dispersed in 1 mL of PBS including 1 wt% BSA. After
potentiostat/galvanostat using NOVA 1.8 software. A modified mild shaking for 30 min, PbS QDs-S1 (or CdS QDs-S2) blocked by
glassy carbon electrode (GCE, diameter 4 mm) as the working BSA were gathered with the use of centrifugation, cleaned with PBS,
electrode (WE), a thin Pt wire as the counter electrode, and a KCl- and dispersed in 1 mL of PBS, kept at 4  C for future use.
saturated calomel electrode (SCE) as the reference electrode (RE)
are the contents of the three-electrode system which was utilized.
2.4. Preparation of the functionalized electrode
2.2. Preparation of QDs and QDs@ZIF-8 particles
In order to achieve a mirror-like surface, 0.3 mm alumina slurry
PbS QDs (or CdS QDs) were prepared following the reported
was used for polishing the glassy carbon electrode (GCE), and then
synthesis strategy. Briefly, a pure mercaptoacetic acid (MPA) liquid
water-ethanol-water was utilized for washing it and after that it
was injected drop by drop to 30 mL of 0.01 M aqueous PbCl2 (or
was kept in room temperature for being dry. Thereupon, AuNPs
CdCl2) under drastic stirring conditional the solution pH changed to
were used for modifying glassy carbon electrode based on the
2.0. Also when another 35 min stirring was over, 1 M aqueous NaOH
method suggested by Arotiba et al. [36]. Shortly, GCE was modified
was injected dropwise to this solution under drastic stirring con-
with 5 mM of HAuCl4 solutions by cycling the potential
dition till the solution pH turns to 6.0. 30 mL of 5 mM aqueous Na2S
from 400 mV to 1100 mV for 10 cycles at a scan rate 50 mV s1.
was appended drop by drop to the very solution under the
Afterwards 10 mL H1 (3 mM) and 10 mL H1 (3 mM) incubated it for 2 h.
mentioned condition and the mixture was being stirred persis-
In the end, 10 mL HT (1.5 mM) was used to block the modified GCE
tently for a period of 60 min. In the end, the MPA-PbS QDs (or MPA-
for 40 min. With the help of various concentrations of target
CdS QDs), that were precipitated by ethanol, were dried in a vac-
microRNAs, 20 mL H3 (3 mM) and 20 mL H4 (3 mM) were incubated at
uum freeze dryer after they were gathered with the use of centri-
the modified GCE for 100 min at room temperature, in order to
fugation and cleaned by ethanol-water solution three times. 30 mg
achieve lots of H1eH3 and H2eH4 dsDNAs. After rinsing with
of MPA-PbS QDs (or MPA-CdS QDs) were ultrasonically dispersed in
double distilled water, 20 mL of PBS containing 4 mg mL1 PbS@ZIF-
6 mL of 1.5 M 2-methylimidazole aqueous solution in order to
8-S1 and CdS@ZIF-8-S2 hybridized with single stranded fragment
produce PbS@ZIF-8 (or CdS@ZIF-8) particles, after that 1.5 mL of
of H1eH3 and H2eH4 dsDNAs at 37  C for 90 min.
0.4 M zinc acetate aqueous solution was augmented to the
The stages of fabricating a biosensor that utilizes QDs as signal
mentioned solution. After 45 min reaction, the products of
tags were the same as the stages of fabricating other biosensors
PbS@ZIF-8 (or CdS@ZIF-8) particles gathered by centrifugation at
that apply QDs@ZIF-8 as signal tags, but with this difference that
5000 rpm, cleaned with water and dried in a vacuum freeze dryer.
PbS@ZIF-8-S1 and CdS@ZIF-8-S2 were replaced by PbS QDs-S1 and
CdS QDs-S2.
2.3. Preparation of PbS QDs-S1, CdS QDs-S2, PbS@ZIF-8-S1 and
CdS@ZIF-8-S2 particles

The procedure of preparation of PbS@ZIF-8@PEI (or CdS@ZIF- 2.5. Electrochemical measurements


8@PEI) particles for inserting amino groups on the surfaces of
PbS@ZIF-8 (or CdS@ZIF-8) particles is as below: The modified electrode at different fabrication steps were
200 mL of 0.1 M PBS (pH 7.4) which contains 1 wt% PEI, was characterized by electrochemical impedance spectroscopy using
injected to 1 mL of PBS that includes 2 mg mL-1 PbS@ZIF-8 (or 5.0 mM [Fe(CN)6]4-/3- as the probe. Electrochemical impedance
CdS@ZIF-8). PbS@ZIF-8@PEI (or CdS@ZIF-8@PEI) particles were spectroscopy that used 5.0 mM [Fe(CN)6]4-/3- as the probe charac-
achieved by stirring the blend for 60 min continuously. terized the modified electrode at various fabrication steps. It was
PbS@ZIF-8-S1 (or CdS@ZIF-8-S2) particles were provided as performed at an AC voltage amplitude of 5 mV in the frequency
below: range from 1 MHz to 0.01 Hz. As shown in Fig. 3, DPV was accom-
The PbS@ZIF-8@PEI (or CdS@ZIF-8@PEI) particles were collected plished to quantitatively detect target miRs. For releasing Pb(II) and
by centrifugation, cleaned with PBS, and dispersed in 1 mL of PBS Cd(II) ions from the tags, 5 mL of 0.1 M HCl aqueous solution was
including 0.25 wt% glutaraldehyde. After reaction for 30 min, the injected to the electrode for 7 min and after that 15 mL of 0.20 M
products were gathered with the use of centrifugation, cleaned acetate buffer (pH 5) was dropped on the electrode. On the way
with PBS, and dispersed in 0.5 mL PBS. Afterwards, 0.5 mL of PBS forward, two depositions of potential and time, respectively 1.0 V
including signaling DNA1 (or signaling DNA2) (1 mg mL1) was and 1 min were implemented in the electrode.
mixed with the above dispersion. After reaction for 2 h (DNA in- Differential pulse stripping voltammograms were recorded
cubation) was done, PbS@ZIF-8-S1 (or CdS@ZIF-8-S2) were gath- between 1.0 V and 0.4 V, with pulse amplitude of 50 mV and
ered by centrifugation, cleaned using PBS, and dispersed in 0.5 mL pulse frequency of 15 Hz. It is believed that [37], DPV accomplished
of PBS containing 1 wt% BSA. After mild shaking for 30 min, the in small volume of electrolyte solution can massively accelerate
PbS@ZIF-8-S1 (or CdS@ZIF-8-S2) particles blocked by BSA were electrochemical signals because of the efficient capture of Pb(II)
gathered with the use of centrifugation, cleaned using PBS, and and Cd(II) ions from electrolyte solution.
70 H. Rezaei et al. / Analytica Chimica Acta 1092 (2019) 66e74

3. Results and discussion approximately the same as that before they are washed. Further-
more, the fluorescence stability of QDs@ZIF-8 composites was also
3.1. Characterizations of the prepared QDs@ZIF-8 considered by evaluating their fluorescence intensity after 15 days,
and almost no considerable fluorescence peaks quenching were
QDs were provided by the use of mercaptoacetic acid as capping seen, that recommends their preferable stability.
agent. The formation of mono dispersed spherical particles with an The size and shape of QDs@ZIF-8 particles were characterized by
average diameter of 6.7 nm and 6.4 nm respectively for PbS QDs SEM and TEM, revealing that both Cd@ZIF-8 (Fig. 3a) and PbS@ZIF-8
and CdS QDs are revealed in TEM image in Fig. 1a and b. Clear lattice (Fig. 3b) particles have regular rhombic dodecahedron shape. The
fringes that indicate QDs are highly crystalline are shown by average diameter of CdS@ZIF-8 and PbS@ZIF-8 are ca. 680 and
HRTEM images in the inset of Fig. 1a and b. The lattices spacing are 710 nm. In addition, the Clear lattice fringes of CdS and Pbs QDs
0.34 nm and 0.335 nm, matching to the (111) plane of cubic CdS QDs were shown by HRTEM image of CdS@ZIF-8 (Fig. 3c) and PbS@ZIF-8
and PbS QDs, respectively. (Fig. 3d), this issue confirms that QDs were successfully encapsu-
FTIR spectroscopy confirmed the presence of mercaptoacetic lated in ZIF-8 particles.
acid on the surfaces of QDs. As shown in Fig. 1c, the intense ab- The EDX elemental mapping analysis results, that are shown in
sorption peaks are seen at 3423 cm1 for CdS QDs and 3465 cm1 Fig. 3e and f, illustrate that C, N, Zn, S, and Pb in the case of PbS@ZIF-
for PbS QDs originated from the hydroxyl bond stretching vibration 8 or Cd in the case of CdS@ZIF-8 are uniformly distributed in ZIF-8
of eCOOH group and expanded hydroxyl bond can be attributed to particles. This issue verifies that a big quantity of PbS QDs and CdS
the solvent [38]. The peaks at 2916 cm1 for CdS QDs and QDs, are encapsulated in ZIF-8 particles. The density of pure ZIF-8
2917 cm1 for PbS QDs are related to eCH2 asymmetric stretching (0.95 g cm3) is lower than the density of PbS@ZIF-8 and
vibration modes [39]. Two absorption peaks associated with sym- CdS@ZIF-8 with 1.18 and 1.11 g cm3 [41]. The contents of Cd and Pb
metric stretching vibration (1396 cm1 for CdS QDs and 1411 cm1 in CdS@ZIF-8 and PbS@ZIF-8, that ASS quantitatively measured
for PbS QDs) and asymmetric stretching vibration (1559 cm1 for them, are 9.41 and 8.74 wt%.
CdS QDs and 1553 cm1 for PbS QDs) of carboxylate groups, which Powder X-ray diffraction patterns of ZIF-8 and QDs@ZIF-8 are
reveal the existence of mercaptoacetic acid on the surfaces of QDs. shown in Fig. 3g. The PXRD pattern of ZIF-8 corresponded
Also, the absence of distinct SeH characteristic band of mercapto- adequately with reported literature [42]. The characteristic peaks of
acetic acid at 2600e2550 cm1 proves the capping of QDs which is ZIF-8 at 2q values of 7.12, 10.17, 12.53, 14.84, 16.31, and 17.71 match
because of covalent bond between metals of QDs and sulfur of respectively to the planes (011), (002), (112), (022), (013), and (222)
mercaptoacetic acid [40]. index planes [43]. No change was seen in the PXRD pattern of
QDs@ZIF-8 particles were achieved by in situ growth of ZIF-8 in QDs@ZIF-8 as compared to ZIF-8 revealing the framework stability
the presence of QDs. Zn (II) ions can be coordinated by both 2- and minimum effect on its crystallinity.
methylimidazole and COOH groups (on the surfaces of QDs)
which enable the encapsulation of QDs in ZIF-8 particles. 3.2. Electrochemical characterization of the proposed biosensor
As shown in Fig. 2, the pure QDs and the composite had almost
the same fluorescence spectra with emission peaks at 458 nm and EIS of the fabrication process of the biosensor in 5 mM [Fe(CN)
920 nm upon excitation at 320 nm and 550 nm for CdS QDs and PbS 6]3/4 (containing 0.1 M KCl) is presented in Fig. 4. The bare GCE
QDs, respectively. However, pure ZIF-8 had no visible peak, which revealed a small semicircle diameter (curve a). Afterwards, as it is
substantiated that the quantum dots were incorporated into ZIF-8. presented in curve b, there has been a dramatic fall in the semicircle
In addition, the synthesized QDs@ZIF-8 composites and the mix- diameter with AuNPs electrodepositing on the GCE. While H1 and
tures of QDs and ZIF-8 were all washed with large amount of water H2 were immobilizing on the GCE, a notable rise happened in
for several times to further confirm that the quantum dots were semicircle diameter (curve c). The reason of this phenomena refers
incorporated into ZIF-8, rather than adsorbed into ZIF-8. After to this issue that H1 and H2 acted as a nonconductor for blocking
comprehensive rinsing, no obvious fluorescence peaks were seen the electron transfer due to the electrostatic repulsion between
from the mixtures of QDs and ZIF-8, while the QDs@ZIF-8 com- negative charges of H1 and H2 phosphate backbone and the
posites still remained an intense fluorescence peaks, which were [Fe(CN)6]3-/4ions. Since the mixture of T1, T2, H3, and H4 were

Fig. 1. TEM image (a) and HRTEM image (inset of a) of MPA-CdS QDs, TEM image (b) and HRTEM image (inset of b) of MPA-PbS QDs, FTIR spectrum of MPA-CdS QDs and MPA-PbS
QDs (c).
H. Rezaei et al. / Analytica Chimica Acta 1092 (2019) 66e74 71

Fig. 2. Fluorescence emission spectra of QDs, ZIF-8, QDs@ZIF-8, QDs@ZIF-8 after 15 days, the washed synthesized QDs/CDs@ZIF-8 composite, and the washed mixture of QDs and
QDs@ZIF-8 for CdS@ZIF-8 (a) and PbS@ZIF-8 (b).

Fig. 3. SEM image (a) and TEM image (inset of a) of CdS@ZIF-8 particles, SEM image (b) and TEM image (inset of b) of PbS@ZIF-8 particles, HRTEM image of CdS@ZIF-8 particles (c),
HRTEM image of PbS@ZIF-8 particles (d), EDX elemental mapping of CdS@ZIF-8 particles (e), EDX elemental mapping of PbS@ZIF-8 particles (f), and PXRX patterns of ZIF-8,
CdS@ZIF-8, PbS@ZIF-8.

incubated on the modified GCE (curve d); as a result the semicircle methylimidazole aqueous solution in order to produce QDs@ZIF-8
diameter rose expectedly. Finally, it was figured out that there particles. The maximum current response belonged to QDs@ZIF-8
happened a rise in Rct value with the formation of QDs@ZIF-8 on using 30 gr QDs in its synthesis process. In addition, the quantity
the modified electrode (curve e). This issue showed that the of QDs in each QDs@ZIF-8 particle can be accounted based on the
immobilizing of QDs@ZIF-8 was done prosperously, and the rise in equation as below: r1V1w ¼ r2V2n, where w is the content QDs, r1 is
impedance value observed, was because the framework of the density of QDs@ZIF-8, V1 is volume of QDs@ZIF-8, V2 is volume
QDs@ZIF-8 hindered the access of the redox probe to the electrode of QDs, r2 is the density of QDs, and n is the number of QDs in each
surface. The prosperous assemble process of the biosensor was QDs@ZIF-8 particle. Thus, in optimum condition, it can be
confirmed by all these results that matched completely with the concluded that each PbS@ZIF-8 particle includes 8.45  106 PbS
rationale. QDs and each CdS@ZIF-8 particle includes 3.96  106 CdS QDs.
Furthermore, as it is shown in Table 2, the experiment condi-
tions were optimized for obtaining the maximum current response.
3.3. Optimum condition of reaction

The intensity of the signal will increase as the number of QDs in 3.4. Analytical performance
the electrode surface rises. So, different amounts of QDs from 5 gr to
40 gr were ultrasonically dispersed in 6 mL of 1.5 M 2- Under optimized assay conditions, the peak currents increased
72 H. Rezaei et al. / Analytica Chimica Acta 1092 (2019) 66e74

Therefore, the DPV signals have been amplified significantly with


the use of QDs@ZIF-8 particles as signal tags. The wide linear ranges
for both analytes were also very notable for practical application.
The subset of the detection range of the proposed method is the
ordinary levels of circulating microRNAs in serum that are from 200
aM to 20 pM [44].
A biosensor was also fabricated using QDs as signal tags. As it is
shown in Fig. 5b, the linear range for miR-1246 detection was from
0.05 pM to 1.0 mM, with a linear regression equation of i ¼ 0.305 log
CmiR-1246þ 5.11(R2 ¼ 0.9967) and also the linear range for miR-4521
detection was from 0.05 pM to 1.0 mM, with a linear regression
equation of i ¼ 0.252 log CmiR-4521þ 3.215(R2 ¼ 0.9949). The slope of
the regression curve (sensitivity) of the biosensor that utilizes
QDs@ZIF-8 as signal tags is about 15 times that of the other one that
utilizes QDs as signal tags.
Fig. 4. The fabrication process of the biosensor: EIS of (a) bare GCE, (b) AuNPs/GCE, (c)
H1/H2/AuNPs/GCE, (d) H1eH3/H2eH4/AuNPs/GCE, (e) H1eH3ePbS@ZIF-8/ 3.5. Reproducibility, repeatability, and long-term stability
H2eH4eCdS@ZIF-8/AuNPs/GCE.

Two important features of the biosensor, reproducibility and


Table 2 repeatability, have been evaluated.
Optimum condition of reaction. The reproducibility of the responses achieved for 1pM of miR-
1246 and miR-4521 with various biosensors constructed, using
optimal condition
the same protocol, was examined. Voltametric measurements that
incubation time for capture probe 120 min were done through 6 biosensors yielded relative standard deviation
incubation time for QDs@ZIF-8 labeling 90 min
HCl leaching time 7 min
(RSD) values of 5.1% and 4.4% for miR-1246 and miR-4521.
potential for ion deposition for DPV measurements 1.0 V Furthermore, appropriate repeatability was presented by the
ion deposition time for DPV measurements 1 min fabricated biosensor. The RSD value (n ¼ 6) for the current response
solution pH for DPV measurements 5 to target miRs (1pM) achieved by the biosensors were 6.2% and 5.2%
reaction time of CHA 100 min
for miR-1246 and miR-4521, respectively.
These values confirmed that the present biosensor preparation
protocol has acceptable reliability.
with the increasing concentration of analytes, as shown in Fig. 5a. Furthermore, the fabricated biosensor was stored at 4  C for 25
Acceptable linear relationships between the peak currents and the days; it remained about 85% of initial current responses for both
logarithm of the analytes concentration were displayed by the target miRs. The gradual deactivation of the immobilized bio-
calibration plots (Fig. 5b). molecules can be the reason of the fall in current responses. The
For miR-1246, the linear regression equation was i ¼ 4.429 log perfect stability of the biosensor was detected by this finding.
CmiR-1246þ 30.75 in the range from 1.0 fM to 1.0 mM with a corre-
lation coefficient of R2 ¼ 0.9959 and also for miR-4521, the linear 3.6. Specificity
regression equation was i ¼ 3.743 log CmiR-4521þ 26.03 in the range
from 1.0 fM to 1.0 mM with a correlation coefficient of R2 ¼ 0.9948. Due to the sequence homology of miR family members, an
The detection limits for miR-1246 and miR-4521 were 0.19 fM, and important challenge in the analysis of miR family members is in the
0.28 fM(S/N ¼ 3), respectively. The low detection limits are due to a process of obtaining separation of the target miRs from other miRs
great quantity of QDs that were encapsulated in each QDs@ZIF-8 and detecting them in complex blends selectively. To evaluate the
label, so the number of QDs labeled to each miR rose massively. selectivity of the biosensor, the current values measured for the
synthetic targets, sequences with just one central base mismatched
(1-m) with respect to the target miRs (based underlined in Table 1),
blends of the fully non-complementary (NC) sequences containing
or not containing the synthetic targets (each at a concentration of
1pM were compared to each other). Apart from miR-4521 in the
case of miR-1246 detection, and miR-1246 in the case of miR-4521
detection, miR-21 was assayed as the NC sequence. The current of a
fully complementary targets were about 10.8 times higher than the
single base mismatch sequences, and the response of the blends of
the fully non-complementary sequences were almost relinquished,
(Fig. 6). In the end, these findings present this issue that the sensor
had high sequence specificity and excellent discrimination for
similar miRNAs.

3.7. MicroRNA detection in serum samples

To explain the great utility of this approach, a series of synthetic


miR-1246 and miR-4521 at different concentrations (5 fM, 50 fM,
and 0.5 pM) will be spiked into healthy human blood serum to
Fig. 5. Differential pulse voltammograms (a) and standard curve (b) for the detection achieve the electrochemical signals. The actual condition of the
of miR-1246 and miR-4521 using PsS@ZIF-8 and CdS@ZIF-8 particles as signal tags. miRNAs sample can be presented by the electrochemical response
H. Rezaei et al. / Analytica Chimica Acta 1092 (2019) 66e74 73

Acknowledgment

The authors thank from University of Isfahan (Iran) for financial


supports of this work.

References

[1] C. Witmer, G. Young, Factor VIII inhibitors in hemophilia A: rationale and


latest evidence, Ther. Adv. Hematol. 4 (2013) 59e72.
[2] D. Lillicrap, Improvements in Factor Concentrates Current Opinion in Hema-
tology, vol. 17, 2010, pp. 393e397.
[3] R.A. Higgins, A.J. Goodwin, Automated assays for von Willebrand factor ac-
tivity, Am. J. Hematol. 94 (2019) 496e503.
[4] K.Y. Yoo, S.C. Joo, Y.M. Choi, Long-term course of anti-factor VIII antibody in
patients with hemophilia A at a single center, Blood Res. 51 (2016) 37e43.
[5] S.C. Gouw, et al., F8 gene mutation type and inhibitor development in patients
with severe hemophilia A: systematic review and meta-analysis, Blood 119
(2012) 2922e2934.
[6] A.B. Payne, C.H. Miller, F.M. Kelly, J. Michael Soucie, W. Craig Hooper, The CDC
Fig. 6. (A) DPV signals in the presence of miRNA-1246, 1-base mismatch miRNA-1246, Hemophilia A Mutation Project (CHAMP) Mutation List: a New Online
and non-complementary (NC) sequences of miRNAs. (B) DPV signals in the presence of Resource Human Mutation, vol. 34, 2013, pp. E2382eE2392.
miRNA-4521, 1-basemismatch miRNA-4521, and non-complementary sequences of [7] J. Astermark, et al., Non-genetic risk factors and the development of inhibitors
miRNAs (all at a concentration of 1012 M). in haemophilia: a comprehensive review and consensus report, Haemophilia
16 (2010) 747e766.
[8] S. Grosswendt, N. Rajewsky, Essentials of miRNA-dependent control of mRNA
translation and decay, miRNA targeting principles, and methods for target
of miR-1246 and miR-4521 (Table 3), which shows significant po-
identification, in: Essentials of Noncoding RNA in Neuroscience, Elsevier,
tential for the miRNAs analysis in clinical diagnosis. 2017, pp. 19e38.
[9] B. Simonson, S. Das, MicroRNA therapeutics: the next magic bullet? Mini Rev.
Med. Chem. 15 (2015) 467e474.
4. Conclusion [10] S. Arshad, A. Singh, N.P. Awasthi, S. Kumari, N. Husain, Clinicopathological
parameters influencing inhibitor development in patients with hemophilia A
In summary, an ultrasensitive electrochemical biosensor was receiving on-demand therapy, Ther. Adv. Hematol. 9 (2018) 213e226, https://
doi.org/10.1177/2040620718785363.
fabricated according to AuNPs, QDs@ZIF-8, and CHA for signal [11] S. Hassan, A. Cannavo , S. Gouw, F.R. Rosendaal, J. van der Bom, Factor VIII
application for the simultaneous detection of two HA biomarkers. products and inhibitor development in previously treated patients with se-
Firstly, the sensitivity of the proposed biosensor, that utilizes vere or moderately severe hemophilia A: a systematic review, J. Thromb.
Haemost. 16 (2018) 1055e1068.
QDs@ZIF-8 as signal tags, was 15 times that of the conventional [12] T. Sarachana, et al., Small ncRNA expression-profiling of blood from hemo-
biosensor, which utilizes QDs as signal tags, because of the great philia a patients identifies mir-1246 as a potential regulator of Factor 8 gene,
signal-amplifying effect. Secondly, according to the enzyme-free PLoS One 10 (2015), e0132433.
[13] C. Chen, et al., Real-time quantification of microRNAs by stem-loop RT-PCR,
target recycling for signal amplification, the electrochemical
Nucleic Acids Res. 33 (2005) e179, https://doi.org/10.1093/nar/gni178.
biosensor presented quick and sensitive detection of target miRs, [14] C.G. Liu, et al., An oligonucleotide microchip for genome-wide microRNA
which can eliminate some detriments of protein enzymes to profiling in human and mouse tissues, Proc. Natl. Acad. Sci. U.S.A. 101 (2004)
9740e9744, https://doi.org/10.1073/pnas.0403293101.
further expand signal response. The biosensor presents great
[15] Y.Q. Liu, M. Zhang, B.C. Yin, B.C. Ye, Attomolar ultrasensitive microRNA
analytical performance and the most significant aim of hiring it was detection by DNA-scaffolded silver-nanocluster probe based on isothermal
to evaluate the endogenous levels of both target miRs directly in amplification, Anal. Chem. 84 (2012) 5165e5169, https://doi.org/10.1021/
human blood serum. Therefore, based on the results of this ac300483f.
[16] S. Takada, et al., Mouse microRNA profiles determined with a new and sen-
research, it can be concluded that the simultaneous detection of sitive cloning method, Nucleic Acids Res. 34 (2006) e115-e115.
multiple miRs can be done using a mixture of multiplexed detec- [17] J.M. Thomson, J. Parker, C.M. Perou, S.M. Hammond, A custom microarray
tion and different RNA probes. platform for analysis of microRNA gene expression, Nat. Methods 1 (2004)
47e53, https://doi.org/10.1038/nmeth704.
As a conclusion, the proposed biosensor prepared an extended [18] Y. Wen, et al., DNAzyme-based rolling-circle amplification DNA machine for
linear range and a low detection limit for miR-1246 and miR-4521 ultrasensitive analysis of microRNA in Drosophila larva, Anal. Chem. 84 (2012)
detections, thanks to the signal amplification strategy. This issue 7664e7669, https://doi.org/10.1021/ac300616z.
[19] X. Zhu, X. Zhou, D. Xing, in: Label-free Detection of microRNA: Two-step
shows that a novel avenue for multi miRs bioanalysis with highly Signal Enhancement with a Hairpin-Probe-Based Graphene Fluorescence
important potential function in clinical diagnosis has been created. Switch and Isothermal Amplification Chemistry vol. 19, Weinheim an der
Bergstrasse, Germany, 2013, pp. 5487e5494, https://doi.org/10.1002/
chem.201204605.
Declaration of competing interest [20] Y. Cheng, J. Lei, Y. Chen, H. Ju, Highly selective detection of microRNA based on
distance-dependent electrochemiluminescence resonance energy transfer
between CdTe nanocrystals and Au nanoclusters, Biosens. Bioelectron. 51
The authors declare that they have no known competing
(2014) 431e436, https://doi.org/10.1016/j.bios.2013.08.014.
financial interests or personal relationships that could have [21] Z. Gao, H. Deng, W. Shen, Y. Ren, A Label-free Biosensor for Electrochemical
appeared to influence the work reported in this paper. Detection of Femtomolar microRNAs Analytical Chemistry, vol. 85, 2013,
pp. 1624e1630, https://doi.org/10.1021/ac302883c.
[22] J. Zhang, et al., A ratiometric electrochemical biosensor for the exosomal
microRNAs detection based on bipedal DNA walkers propelled by locked
Table 3
nucleic acid modified toehold mediate strand displacement reaction, Biosens.
The reliability of the proposed method.
Bioelectron. 102 (2018) 33e40, https://doi.org/10.1016/j.bios.2017.10.050.
Spiked (M) miR-1246 miR-4521 [23] J. Zhao, Z. Ma, Ultrasensitive detection of prostate specific antigen by elec-
trochemical aptasensor using enzyme-free recycling amplification via target-
Measured (M) Recovery Spiked (M) Measured (M) Recovery induced catalytic hairpin assembly, Biosens. Bioelectron. 102 (2018) 316e320,
https://doi.org/10.1016/j.bios.2017.11.044.
rate (%) rate (%) [24] J. Lee, O.K. Farha, J. Roberts, K.A. Scheidt, S.T. Nguyen, J.T. Hupp, Metal-organic
5.0  1013
5.21  10 13
104 13
5.0  10 5.08  1013
102 framework materials as catalysts, Chem. Soc. Rev. 38 (2009) 1450e1459,
5.0  1014 5.34  1014 107 5.0  1014 5.52  1014 110 https://doi.org/10.1039/b807080f.
15 [25] P. Ling, J. Lei, L. Zhang, H. Ju, Porphyrin-encapsulated metal-organic frame-
5.0  10 5.75  1015 115 5.0  10 15
5.67  1015 113
works as mimetic catalysts for electrochemical DNA sensing via allosteric
74 H. Rezaei et al. / Analytica Chimica Acta 1092 (2019) 66e74

switch of hairpin, DNA Anal. Chem. 87 (2015) 3957e3963, https://doi.org/ 135 (2013) 1926e1933, https://doi.org/10.1021/ja311085e.
10.1021/acs.analchem.5b00001. [36] O.A. Arotiba, A. Ignaszak, R. Malgas, A. Al-Ahmed, P.G.L. Baker, S.F. Mapolie,
[26] W. Ma, Q. Jiang, P. Yu, L. Yang, L. Mao, Zeolitic imidazolate framework-based E.I. Iwuoha, An electrochemical DNA biosensor developed on novel multi-
electrochemical biosensor for in vivo electrochemical measurements, Anal. nuclear nickel (II) salicylald imine metallodendrimer platform, Electrochim.
Chem. 85 (2013) 7550e7557, https://doi.org/10.1021/ac401576u. Acta 53 (2007) 1689e1696, https://doi.org/10.1016/j.electacta.2007.08.016.
[27] W.J. Shen, Y. Zhuo, Y.Q. Chai, R. Yuan, Cu-based metal-organic frameworks as [37] K. Saha, S.S. Agasti, C. Kim, X. Li, V.M. Rotello, Gold Nanoparticles in Chemical
a catalyst to construct a ratiometric electrochemical aptasensor for sensitive and Biological Sensing Chemical Reviews, vol. 112, 2012, pp. 2739e2779,
lipopolysaccharide, Detect. Anal. Chem. 87 (2015) 11345e11352, https:// https://doi.org/10.1021/cr2001178.
doi.org/10.1021/acs.analchem.5b02694. [38] D.S. Kumar, et al., Optical properties of colloidal aqueous synthesized 3
[28] Z. Wang, S.M. Cohen, Postsynthetic modification of metal-organic frame- Mercaptopropionic Acid stabilized CdS quantum dots, AIP Conf. Proc. 1728
works, Chem. Soc. Rev. 38 (2009) 1315e1329, https://doi.org/10.1039/ (2016), https://doi.org/10.1063/1.4946213, 020162-1e020162-4.
b802258p. [39] S.S. Hosseini, et al., Facile microwave approach for synthesis of CdS quantum
[29] L. Chen, R. Luque, Y. Li, Controllable design of tunable nanostructures inside dots as barrier layer for increasing dye-sensitized solar cells efficiency,
metal-organic frameworks, Chem. Soc. Rev. 46 (2017) 4614e4630, https:// J. Mater. Sci. Mater. Electron. 27 (2016) 12240e12246, https://doi.org/
doi.org/10.1039/c6cs00537c. 10.1007/s10854-016-5380-x.
[30] Q.L. Zhu, Q. Xu, Metal-organic framework composites, Chem. Soc. Rev. 43 [40] G. Kaur, et al., Size tuning of MAA capped CdSe and CdSe/CdS quantum dots
(2014) 5468e5512, https://doi.org/10.1039/c3cs60472a. and their stability in different pH environments, Mater. Chem. Phys. 143
[31] R.K. Dutta, A. Kumar, Highly sensitive and selective method for detecting (2014) 514e523, https://doi.org/10.1016/j.matchemphys.2013.09.003.
ultratrace levels of aqueous uranyl ions by strongly photoluminescent- [41] J.C. Tan, T.D. Bennett, A.K. Cheetham, Chemical structure, network topology,
responsive amine-modified cadmium sulfide quantum dots, Anal. Chem. 88 and porosity effects on the mechanical properties of Zeolitic Imidazolate
(2016) 9071e9078, https://doi.org/10.1021/acs.analchem.6b01943. Frameworks, Proc. Natl. Acad. Sci. U.S.A. 107 (2010) 9938e9943, https://
[32] N. Hildebrandt, et al., Energy transfer with semiconductor quantum dot bio- doi.org/10.1073/pnas.1003205107.
conjugates: a versatile platform for biosensing, Energy Harvesting, and Other [42] J. Yao, et al., High-yield synthesis of zeolitic imidazolate frameworks from
Developing Applications, Chem. Rev. 117 (2017) 536e711, https://doi.org/ stoichiometric metal and ligand precursor aqueous solutions at room tem-
10.1021/acs.chemrev.6b00030. perature, CrystEngComm 15 (2013) 3601e3606, https://doi.org/10.1039/
[33] X. Michalet, et al. (New York, NY), Quantum Dots for Live Cells, in Vivo Im- C3CE27093A.
aging, and Diagnostics Science, vol. 307, 2005, pp. 538e544, https://doi.org/ [43] M. Zeng, Z. Chai, X. Deng, Q. Li, S. Feng, J. Wang, D. Xu, Coreshell CdS@ZIF-8
10.1126/science.1104274. structures for improved selectivity in photocatalytic H2 generation from for-
[34] S. Saha, G. Das, J. Thote, R. Banerjee, Photocatalytic metal-organic framework mic acid, Nano Res. 9 (2016) 2729e2734, https://doi.org/10.1007/s12274-
from CdS quantum dot incubated luminescent metallohydrogel, J. Am. Chem. 016-1161-3.
Soc. 136 (2014) 14845e14851, https://doi.org/10.1021/ja509019k. [44] M. Tsujiura, et al., Circulating microRNAs in plasma of patients with gastric
[35] W.W. Zhan, Q. Kuang, J.Z. Zhou, X.J. Kong, Z.X. Xie, L.S. Zheng, Semiconductor@ cancers, Br. J. Canc. 102 (2010) 1174e1179, https://doi.org/10.1038/
metal-organic framework core-shell heterostructures: a case of ZnO@ZIF-8 sj.bjc.6605608.
nanorods with selective photoelectrochemical response, J. Am. Chem. Soc.

You might also like