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Characterization of Knockdown Resistance in DDT-and Pyrethroid-Resistant Culex Quinquefasciatus Populations From Sri Lanka
Characterization of Knockdown Resistance in DDT-and Pyrethroid-Resistant Culex Quinquefasciatus Populations From Sri Lanka
Characterization of Knockdown Resistance in DDT-and Pyrethroid-Resistant Culex Quinquefasciatus Populations From Sri Lanka
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Summary DDT and pyrethroid resistance in Culex quinquefasciatus have been previously reported in Sri Lanka,
but the mechanisms involved have yet to be characterized. We report the presence of two mutant alleles
of the sodium channel gene, the target site for both DDT and pyrethroid insecticides. Both mutations
resulted in classic knockdown resistance (kdr) L1014F mutation because of either an A-to-T substitution
or an A-to-C substitution. We developed two alternative assays to distinguish between the two
mutations and used these to screen 214 individuals from nine geographic locations throughout Sri
Lanka. Very high levels of kdr mutations were found throughout the country. A predominance of the
A-to-C mutation was observed over the A-to-T with an average allele frequency of 50% and 2%,
respectively. In addition to these non-synonymous kdr substitutions, we also found an indel (TCACA) in
the intron downstream of the kdr mutation. After genotyping this indel in 136 individuals, we found no
evident correlation between kdr genotypes and intronic indel. The presence of two alternative kdr
mutations has implications for the reliance on single molecular diagnostics for detection of resistance in
field populations. Furthermore, the high levels of these kdr mutations in C. quinquefasciatus populations
throughout Sri Lanka are of concern for the future of pyrethroid-based control programmes on this
island.
hot ligation reaction (Table 1). Aliquots were made for genotype individuals for the presence of this indel follow-
each of the three oligonucleotide pairs containing 1 lm ing the protocol described earlier and using the primers
detector and 1 lm reporter. Three microlitres of PCR listed in Table 1.
product from the reaction described above was mixed with
2 ll of 10· ampligase buffer, 50 nm detector and reporter
Results
mix and 0.05 U ⁄ ll Ampligase enzyme (Epicentre, Mad-
ison, WI, USA) and water to bring the total volume of the Bioassays were carried out with samples from Kegalle and
reaction to 20 ll. The reaction conditions were 95 C for Kurunegala and resulted in 99% survival rate using 4%
5 min, 25 cycles of 94 C for 1 min, 63 C for 2 min, with DDT papers (149 alive over 150 tested) and 0.25%
a final hold at 4 C. Each specimen’s genotype was permethrin (148 alive over 150 tested).
determined following the protocol described in detail by A 400-bp fragment of the sodium channel gene was
Lynd et al. (2005). sequenced from 20 C. quinquefasciatus individuals from
For the pyrosequencing method, 3 sequence-specific Kurunegala, who had survived 1 h of exposure to 0.25%
primers were designed to genotype the kdr mutation permethrin. Two polymorphic sites were identified within
(Table 1) using the software provided by Pyrosequencing this sequence. The first site was at the third position of
AB (http://www.pyrosequencing.com). The sequence to codon 1014, where we observed the A-to-T mutation,
analyse was 5¢-TTA ⁄ C ⁄ TGTC GTGAGTATTCCAG-3¢ inducing a change of leucine to phenylalanine, as previ-
and the dispensation order was 5¢-TACaGTCGT-3¢. The ously reported by Xu et al. (2005) in the same species.
lower case of nucleotide ‘a’ means that it is negative However, some individuals contained an alternative
control and should not be incorporated in the target DNA. phenylalanine codon at this position, encoded by TTC.
A target DNA fragment was first amplified by PCR as This A-to-C kdr mutation has not been previously reported
described previously (Wondji et al. 2007) using the for- in mosquitoes (Davies et al. 2007). The second polymor-
ward and the biotinylated reverse primers presented in phic site was in the intron, around 260-bp downstream of
Table 1. Pyrosequencing reactions were performed as the kdr mutation, where we observed a 5-bp insertion
described by Wondji et al. (2007) according to the man- (TCACA) in 8 of the 15 individuals.
ufacturer’s instructions using the PSQ 96 SNP Reagent Kit
(Biotage AB) and the sequencing primer shown in Table 1.
Optimization of knockdown resistance diagnostics
The genotype was determined using the SNP Software
(Biotage AB). The pyrosequencing method monitors DNA synthesis in
real time by recording bioluminescence resulting from a
cascade of reactions triggered by the incorporation of a
Genotyping of intronic indel
nucleotide. In this study, the assay was used to detect the
A 5-bp indel was identified in the intronic region that three potential nucleotides (A ⁄ C ⁄ T) at the third coding
immediately follows the kdr mutation between base pairs position of the 1014 codon in a single reaction. The
253 and 257 of this intron. The pyrosequencer was used to histograms for each possible genotype at codon 1014 were
(a) (d)
(b) (e)
Figure 4 Example of the kdr genotype results from a HOLA
plate. Origin of samples used: Kegalle (1–3), Matale (4–6), Kandy
(7–9), Colombo (10–12); A ⁄ A, A ⁄ C, A ⁄ T and C ⁄ T, respectively,
indicate homozygote TTA, heterozygote TTA ⁄ TTC, heterozygote
TTA ⁄ TTT and TTC ⁄ TTT genotypes observed for the 12 samples
tested.
(c) (f)
63 C. This improved the concordance rate and left only 5
individuals showing a discrepancy in the genotype score
from the two methods. These 5 samples were sequenced
and the results confirmed scores from the pyrosequencer.
Details of these results are presented in Table 2.
Genotypes (%)
SS, homozygote susceptible genotype; RS, heterozygote susceptible ⁄ resistant genotype; RR, homozygote-resistant genotype. The fre-
quencies of genotypes are given in brackets.
kdr Genotypes
are Blattella germanica, the German cockroach (Dong equipment, not readily available in disease endemic coun-
1997) and Myzus persicae, the green peach aphid (Marti- ties. By contrast, the HOLA method is very easy to set up
nez-Torres et al. 1999). But the A-to-T mutation was not and implement in any basic laboratory and is a cheap
detected in these two species confirming that the co- diagnostic method for field studies.
occurrence of the A-to-T and A-to-C mutations in C. The present study highlights the genetic plasticity of
quinquefasciatus is the first observation in insects so far. It mosquito species and supports the need to constantly
may be interesting to investigate in future studies if the A- monitor field populations of vectors across their geo-
to-C mutation could confer a different level of pyrethroid graphical distribution for mutations conferring insecticide
resistance than the A-to-T mutation despite the fact that resistance. Populations of C. quinquefasciatus should be
both the mutations lead to the same amino acid change. monitored around the world with one of the two methods
Further investigation could also assess the level of resis- presented in this study to accurately detect the presence of
tance conferred by the simultaneous co-occurrence of A-to- the kdr mutation. This accurate detection will improve
C and A-to-T mutations in a population or in an control programmes on this vector.
individual. Previously, in mosquitoes, two mutations have
been observed in the 1014 codon, but these lead to
Acknowledgements
alternative substitutions, either a serine or phenylalanine
(Martinez-Torres et al. 1999; Ranson et al. 2000). The authors would like to acknowledge Stuart Hall for
The presence of these two alleles shows that kdr technical help.
mutation in C. quinquefasciatus has arisen at least twice.
The high predominance of the A-to-C mutation over the A-
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Corresponding Author Charles S. Wondji, Liverpool School of Tropical Medicine, Pembroke Place, Liverpool L3 5QA, UK.
Tel.: +44 151 705 3107; Fax: +44 151 705 3369; E-mail: c.s.wondji@liverpool.ac.uk