Digital Notes (Organic Chemistry)

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o For example, every neutral

carbon atom has an atomic


number of six, meaning it has six
protons in its nucleus and six
electrons surrounding the
nucleus.

 A cation is positively charged


and has fewer electrons than
its neutral form.
 An anion is negatively
charged and has more
electrons than its neutral
form.
 Isotopes are two atoms of the
1.1 THE PERIODIC TABLE same element having a different
number of neutrons.
All matter is composed of the  The mass number of an atom is
same building blocks called the total number of protons and
atoms. There are two main neutrons in the nucleus. Isotopes
components have different mass numbers.
of an atom.
 The most common isotope of
hydrogen has one proton and
no neutrons in the nucleus, but
 The nucleus contains 0.02% of hydrogen atoms have
positively charged protons one proton and one neutron.
and uncharged neutrons. This isotope of hydrogen is
Most of the mass of the atom called deuterium, and is
is contained in the nucleus. sometimes symbolized by the
 The electron cloud is letter D.
composed of negatively
charged electrons. The  Most carbon atoms have six
electron cloud comprises protons and six neutrons in the
most of the volume of the nucleus, but 1.1% have six
atom. protons and seven neutrons.
The charge on a proton is equal in
magnitude but opposite in sign to the  The atomic weight is the
charge on an electron. weighted average of the
mass of all isotopes of a
In a neutral atom, the number of particular element, reported in
protons in the nucleus equals the atomic mass units (amu).
number of electrons. This quantity,
called the atomic number, is unique to
a particular element.
 Across each row of the
FIGURE 1.1
periodic table, electrons are
A comparison of two isotopes of the added to a particular shell of
element carbon. orbitals around the nucleus.

 The shells are numbered 1,


2, 3, and so on. Adding
electrons to the first and
second shell forms the first
and second row.

 Electrons are first added to


FIGURE 1.2 the shells closest to the
nucleus. These elections are
A periodic table of the common held most tightly.
elements seen in organic chemistry.

 Each shell contains a certain


number of subshells called
orbitals. An orbital is a region
of space that is high in electron
density.
 There are four different kinds of
orbitals, called s, p, d, and the
first shell has only one orbital,
 A row in the periodic table is called an s orbital.
also called a period, and a
 The second shell has two kinds
column is also called a group.
of orbitals, s and p, and so on.
 A periodic table is located on
Each type of orbital occupies a
the inside front cover for your
reference. certain space and has a
particular shape.
 An s orbital has a sphere of
electron density. It is lower in
energy than other orbitals of
the same shell, because
electrons are kept close to the
positively charged nucleus.
 An s orbital is filled with
 Each column in the periodic electrons before a p orbital in
table is identified by a group the same shell.
number, an Arabic (1 to 8) or  A p orbital has a dumbbell
Roman (I to VIII) numeral shape. It contains a node of
followed by the letter A or B. electron density at the nucleus.
 For example, carbon is
located in group 4A in the
periodic table in this text.
 A node means there is
no electron density in
this region. A p orbital
is higher in energy than
THE FIRST ROW

 The first row of the periodic


table is formed by adding
electrons to the first shell of
orbitals around the nucleus.
 There is only one orbital in  Each of the four orbitals in the
the first shell, called the 1s second shell can hold two
orbital. electrons, there is a
maximum capacity of eight
electrons for elements in the
 Remember: Each orbital second row.
can have a maximum of  The second row of the
two electrons periodic table consists of
eight elements, obtained by
adding electrons to the 2s
THE SECOND ROW and three 2p orbitals.

 Every element in the second 1.2 BONDING


row has a filled first shell of  Bonding is the joining of
electrons. Thus, all second- two atoms in a stable
row elements have a 1s2 arrangement.
configuration.  Bonding may occur between
atoms of the same or different
Available to accept additional elements.
Electrons:
 One 2s orbital, the s
orbital in the second  Bonding
shell  Covalent bonds isresulta fromfavorable
the
 three 2p orbitals, all sharing of electrons betweenalways
process because it
leads to lowered
Second-row
 nuclei.
two energycan
elements and
dumbbell-shaped.
 have no more
A covalent bond is a two-than eight
valence
electron bond, electrons around
 A them.
compoundFor neutral
with covalent
increased stability. Joining
two or more elements forms
compounds.

 A first-row element like


hydrogen can accommodate  Through bonding, atoms attain a
two electrons around it. This complete outer shell of valence
would make it like the noble electrons.
gas helium at the end of the  Through bonding, atoms attain a
same row. stable noble gas configuration of
 A second-row element is electrons.
most stable with eight
 The transfer
valence of electrons
electrons forms
around it
stable salts composed of cations
like neon.
and anions.
 Elements that behave in
this manner are said to
follow the octet rule. 1.3 LEWIS STRUCTURE

 Lewis structures are electron


dot representations for
molecules.
There are two different kinds of
GEN. RULES:
bonding:
1. Draw only the valence electrons.
 Ionic bonds result from the 2. Give every second-row element no more
transfer of electrons from than eight electrons.
one element to another. 3. Give each hydrogen two electrons.
 An ionic bond generally
occurs when elements
on the far left side of Step [1] Arrange atoms next to each other
the periodic table that you think are bonded together.
combine with elements
on the far right side.  Always place hydrogen atoms
and halogen atoms on the
periphery because H and X (X =
F, Cl, Br, and I) form only one
bond each.
 The sum of the formal
Step [2] Count the electrons. charges on the individual
 Count the number of valence atoms equals the net charge
electrons from all atoms. on the molecule or ion.
 Add one electron for each
negative charge.
 Subtract one electron for each 1.4A ISOMERS
positive charge.
 This sum gives the total
number of electrons that must  Isomers are different
be used in drawing the Lewis molecules having the same
structure molecular formula

Step [3] Arrange the electrons around 1.4B Exceptions to the Octet Rule
the atoms.
• Place a bond between every  Organic compounds—C, N,
two atoms, giving two O, and the halogens—follow
electrons to each H and no the octet rule. Hydrogen is a
more than eight to any notable exception, because it
• second-row atom. accommodates only two
• Use all remaining electrons to electrons in bonding.
fill octets with lone pairs. Additional exceptions include
• If all valence electrons are boron and beryllium (second-
used and an atom does not row elements in groups 3A
have an octet, form multiple and 2A, respectively), and
bonds. elements in the third row
Step [4] Assign formal charges to all (particularly phosphorus and
atoms. sulfur).

Elements in Groups 2A and 3A


1.3C FORMAL CHARGE
 Elements in groups 2A and
 Formal charge is the charge 3A of the periodic table, such
assigned to individual atoms as beryllium and boron, do
in a Lewis structure. not have enough valence
electrons to form an octet in a
Formal charge is calculated as neutral molecule.
follows:
Elements in the Third Row
FORMAL CHARGE = No. Of  A second exception to the
Valence Electrons – No. Of octet rule occurs with some
Electrons of an Atom owns elements located in the third
row. These elements have
 An atom “owns” all of its empty d orbitals available to
unshared electrons and half of its accept electrons, and thus
shared electrons. they may have more than
eight electrons around them.
No. Of Electrons Owned = No. Of
Unshared Electrons + ½ Shared
Electrons
1.5 RESONANCE 1.5A AN INTRODUCTION TO
RESONANCE THEORY

 One structure has a  Resonance structures are not


negatively charged N atom real. An individual resonance
and a C– O double bond; the structure does not accurately
other has a negatively represent the structure of a
charged O atom and a C– N molecule or ion. Only the
double bond. hybrid does.
 These structures are called  Resonance structures are
resonance structures or not in equilibrium with each
resonance forms. other. There is no movement
 A doubleheaded arrow is of electrons from one form to
used to separate two another.
resonance structures  Resonance structures are not
isomers. Two isomers differ in
 Resonance structures are the arrangement of both
two Lewis structures having atoms and electrons,
the same placement of atoms whereas resonance
but a different arrangement structures differ only in the
of electrons. arrangement of electrons.

1.5B DRAWING RESONANCE


Each resonance structure implies that STRUCTURES
electron pairs are localized in bonds or
on atoms.
 In actuality, resonance allows Rule [1] Two resonance structures
certain electron pairs to be differ in the position of multiple
bonds and non-bonded electrons.
delocalized over two or more
The placement of atoms and single
atoms, and this delocalization
bonds always stays the same.
of electron density adds
stability. Rule [2] Two resonance structures
A molecule with two or more must have the same number of
resonance structures is said to be unpaired electrons.
resonance stabilized.
Rule [3] Resonance structures
must be valid Lewis structures.
Hydrogen must have two electrons
and no second-row element can
have more than eight electrons.
Curved arrow notation is a Bond length is the average distance
convention that shows how between the centers of two bonded
electron position differs between nuclei.
the two resonance forms.  Bond lengths are
typically reported in
 Curved arrow notation picometers (pm), where
shows the movement of an 1 pm = 10–12 m.
electron pair. The tail of the
arrow always begins at an  Bond length decreases across a
electron pair, either in a row of the periodic table as the
size of the atom decreases.
bond or lone pair. The head
 Bond length increases down a
points to where the electron
column of the periodic table as
pair “moves.”
the size of an atom increases.

1.5C RESONANCE HYBRID


16B BOND ANGLE
The resonance hybrid is the
Bond angle determines the shape around
composite of all possible resonance
any atom bonded to two other atoms.
structures. In the resonance hybrid  group is either an atom or a
 the electron pairs drawn lone pair of electrons. Then
in different locations in we use the valence shell
individual resonance electron pair repulsion
structures are (VSEPR) theory to
delocalized. determine the shape.
 The resonance hybrid is more
stable than any resonance TWO GROUPS AROUND AN ATOM
structure because it delocalizes
electron density over a larger Any atom surrounded by only two
volume. groups is linear and has a bond
 When two resonance angle of 180°
structures are different, the
hybrid looks more like the THREE GROUPS AROUND AN
“better” resonance ATOM
structure. The “better”
resonance structure is called Any atom surrounded by three
the major contributor to the groups is trigonal planar and has
hybrid, and all others are bond angles of 120°
minor contributors.
FOUR GROUPS AROUND AN ATOM
 A “better” resonance structure is
Any atom surrounded by four
one that has more bonds and
groups is tetrahedral and has bond
fewer charges.
angles of approximately 109.5°.

1.7A CONDENSED STRUCTURES


Condensed structures are most often
used for compounds having a chain of
16A BOND LENGTH
atoms bonded together, rather than a positively and negatively
ring. charged carbon atoms,
 because both the
 All of the atoms are hydrogen atoms and the
drawn in, but the two- lone pairs are omitted
electron bond lines are
generally omitted.
HYBRIDIZATION 18A HYDROGEN
 Atoms are usually drawn next
to the atoms to which they  1s orbital on one H
are bonded. overlaps with the 1s
 Parentheses are used around orbital on the other H to
similar groups bonded to the form a bond that
same atom. concentrates electron
 Lone pairs are omitted. density between the two
nuclei.
 This type of bond, called
1.7B SKELETAL STRUCTURES
a r (sigma) bond, is
Skeletal structures are used for cylindrically symmetrical
organic compounds containing both because the electrons
rings and chains of atoms. forming the bond are
distributed symmetrically
 Assume there is a carbon
about an imaginary line
atom at the junction of any
connecting the two
two lines or at the end of any
nuclei.
line.
 A r bond concentrates
 Assume there are enough
electron density on the axis
hydrogens around each
that joins two nuclei. All single
carbon to make it tetravalent.
bonds are r bonds.
 Draw in all heteroatoms and  This lowest energy
the hydrogens directly arrangement of electrons
bonded to them. for an atom is called its
ground state.
1.7C SKELETAL STRUCTURES
WITH CHARGED CARBON
ATOMS
Hybridization is the combination of two
or more atomic orbitals to form the
Take care in interpreting skeletal
same number of hybrid orbitals, each
structures for positively and
having the same shape and energy.
negatively charged carbon atoms,
because both the hydrogen atoms and These hybrid orbitals are called sp3
the lone pairs are omitted. hybrids because they are formed from
one s orbitals and three p orbitals.

1.8C OTHER
 HYBRIDIZATION
Take care in interpreting
PATTERNS—SP ANDstructures
skeletal SP2 for
HYBRID ORBITALS
 Each carbon is
trigonal planar
Forming sp3 hybrid orbitals is just one  Each carbon is sp2
way that 2s and 2p orbitals can hybridized.
hybridize.

 The number of orbitals is 1.9C ACETYLENE—C2H2


always conserved in
hybridization; that is, a
given number of atomic Based on the Lewis structure of
orbitals hybridize to form acetylene, HC– –– CH, each
an equivalent number of carbon atom is singly bonded to
hybrid orbitals. one hydrogen atom and triply
 One 2s orbital and three 2p bonded to the other carbon atom,
orbitals form four sp3 hybrid so each carbon atom is
orbitals. surrounded by two groups. As a
 One 2s orbital and two 2p result:
orbitals form three sp2 hybrid
 Each carbon is linear
orbitals.
 Each carbon is sp
 One 2s orbital and one 2p
hybridized
orbital form two sp hybrid
orbitals.
1.10A A COMPARISON OF
19A Ethane—CH3CH3 CARBON–CARBON BONDS

longest C–C bond weakest bond


According to the Lewis structure for
ethane, CH3CH3, each carbon atom is
singly bonded to four other atoms. As shortest C–C bond
a result:
 As the number of
 Each carbon is tetrahedral. electrons between two
 Each carbon is sp3 nuclei increases, bonds
hybridized. become shorter and
stronger.
 Thus, triple bonds are
19B Ethylene—C2H4
shorter and stronger than
The Lewis structure of ethylene, double bonds, which are
CH2–– CH2: shorter and stronger than
Each carbon atom is singly single bonds.
bonded to two H atoms and
doubly bonded to the other C
atom, so each C is surrounded by
three groups. As a result: Ethane
is a constituent of natural gas. 1.10B A COMPARISON OF
CARBON–HYDROGEN BONDS
has a net dipole, use the following
two-step procedure:

[1] Use electronegativity differences to


identify all of the polar bonds and
the directions of
 As the s-character increases,
the bond dipoles.
a hybrid orbital holds its
electrons closer to the
[2] Determine the geometry around
nucleus, and the bond
individual atoms by counting groups,
becomes shorter and
and decide if individual dipoles cancel
stronger.
or reinforce each other in space.

1.11 ELECTRONEGATIVITY AND


BOND POLARITY

Electronegativity is a measure of an
atom’s attraction for electrons in a
bond. Thus, electronegativity indicates dfefef
how much a particular atom “wants”
electrons.

 Electronegativity increases
across a row of the periodic table
as the nuclear charge increases
(excluding the noble gases).
 Electronegativity decreases
down a column of the periodic
table as the atomic radius
increases, pushing the valence
electrons farther from the
nucleus

1.12 POLARITY OF MOLECULES

To determine whether a molecule

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