Artificial Intelligence in Bioinformatics

You might also like

Download as pdf or txt
Download as pdf or txt
You are on page 1of 4

Volume 6, Issue 2, February – 2021 International Journal of Innovative Science and Research Technology

ISSN No:-2456-2165

Artificial Intelligence in Bioinformatics


Mantu Bera
IT Teacher, JYCSM,Narajole, Paschim Medinipur, West Bengal, India

Abstract:- Artificial intelligence is very useful in Artificial intelligence hold up both general and clinical
Bioinformatics. With the essence of Machine learning research via facilitating the advance methods for the
,difficult biological tasks have been solved like automatic purpose of biological sequence comparison, protein-protein
genome structure analysis,discover vaccine for newly interaction, structure-function analysis, and retrieval of
deadly viruses,identifying new micro-organism,peptides information and management of knowledge as well.
etc. It helps to automatically find DNA pattern for Advance applications of bioinformatics beared by AI
different creature.AI actually opened the door of involves in silico research experiments simulations,
Biological sectors like Vaccine preparation,drugs complicated systems analysis, drug findings and design, and
production, study of virology, analysis process of also therapy optimization. High-throughput techniques such
antibody-antigen interactions and pathogens etc. as proteomics,genomics as well assystems biology
combined with detonating amounts of scientific literature
I. INTRODUCTION accessible online, and developing amounts of the clinical
data have created a new environment where large quantities
Artificial intelligence is a important field of Computer of data are present and getable electronically, though our
science and engineering to make machine capable to show capability to operate and process and explain those data is
intelligence like human.The idea of AI is discovered upon falling behind. This condition is identified as the “Big Data”
the concept which human think and reasoning procedures is domain which needs new methods to analyse, interpret, and
conventionally expressed, collected, and conventionally utilization of those data.
embedded into machines. AI includes intelligent agents
(systems which recognize their environment and make New implementations for management of data require
decisions and take actions) to execute operation like to be produced and availability, active community inclusion
reasoning, planning, knowledge extraction, learning, is required to process these data, and combination of this
perception, communication,moving and also handling and data into the knowledge bases enable huge data usable.
operating objects. AI utilizes statistical methods, symbolic These require have produced new scopes for AI:
reasoning and computational intelligence . While early computational foundation of Artificial intelligence enables
assurances which human-intelligence may be completely for application of algorithms, specially those which are of
repeated by a machine have gave out and the complications repetition nature – a huge number of uncomplicated plain
of human intelligence was misjudged, a span of products on operations can be carried out over huge compound spaces of
the basis of AI have been implemented and set to use. Such biological data. Furthermore, automated reasoning and
applications involve autopilot technology used in the machine intelligence enable to analysis of complex systems
transportation and airplanes-controlling and trains without with the use of advanced algorithms as well as automated
drivers, automated mining machines, automatic cranes, and reasoning. We must describe and provide examples of
a different types of industrial robots. Other applications advance applications of bioinformatics in AI with examples
involve automatic readers and even text to speech from the sector of vaccinology and immunology. These
conversion system,computer perception and face recognition sectors are ,in particular, satisfactory for this type analysis as
, games and toys,space applications and military, financial really all features of bioinformatics are presented. These
applications and many more. Biomedical applications of applications include human, clinical
Artificial intelligence consists scheduling, medical images- bioinformatics,pathogen, high-throughput methods,
interpretations, decision support systems for diagnostics , epidemiology and disease prevention. Vaccination is one
therapy optimization, and robotic surgery as well and medical involvement which has the biggest positive knock
others. on our health.

II. BIOINFORMATICS III. APPLICATIONS OF ARTIFICIAL


INTELLIGENCE IN BIOINFORMATICS
Bioinformatics can be defined as a interdisciplinary
field which use method to manage and analyse biological Advances in sector of vaccinology and immunology
data. General bioinformatics-application involves managing dependency on innovations in biotechnology, especially
the biological data and information as well, analysis of genomics, signature tagged mutagenesis,proteomics,
biological sequences, molecular structures-analysis. immune modulation, computational simulations and
Advanced applications consists biological systems- complicated system analysis. These fields gain experience
modelling. Bioinformatics applications are usually executed quickly growing or developing knowledge which increased
as the software tools which are used to produce very useful realizations of the human immune system as well as
biological-knowledge.Applications of Bioinformatics in pathogens.Vaccine development is absolutely more

IJISRT21FEB331 www.ijisrt.com 433


Volume 6, Issue 2, February – 2021 International Journal of Innovative Science and Research Technology
ISSN No:-2456-2165
complicated; ideal and genuine vaccines are safe, may be laboratory experimental research. In only one run we carry
applied to general population, are economical to produce, out the primary investigation of vaccine targets from greater
easy storing and distributing. Increasing knowledge and the than 20000 flavivirus protein and in another only one single
torrent of data even present new blockades for development run screening vaccine targets from greater than 100000
consisting better standards for safety and regulative influenza protein. The results of runs made reports which
requirements , increasing conciousness for large variation in have been used directly for the patent applications. This
pathogens as well as the human immune system. automated applications need a well defined workflow. These
workflows should be based on sounds idea actually acquired
AI and Bioinformatics present the intimidating from general science, and also well defined sets for
integration where bioinformatics make possibility of analytical tools which are ,however,combined to perform
analysis of very complex biological systems.On the other simulations and predict. These predictions, may be validated
hand AI does enable human-like reasoning. AI-based engine into a little number of well-chosen experiments . After
can definitely perform both of complex tasks on the basis of accurate interpretation ,then these results may be revolved
reasoning, and repetitive tasks which can be executed over a into products – vaccine part(component) and formulations of
large combinatorial space and can simulate billions of wet- vaccine (Fig. 1).

Fig 1:- Flowchart including reasoning,bioinformatics-tools and vaccine-automation invention process.

This methods includes innovative tools for Block Entropy which can identify, assess, and quantify preserved blocks within
huge number of sequences (hundreds in thousands). These type of blocks (in Fig. 2) are studied for their immunological potential
with the help of in silic- peptide binding analysis(assays) for identifying blocks which can serve as the vaccine-targets.

Fig 2:- BlockLogo tool(above) indentifies Conserved blocks. While variation at individual positions shown by upper logo within
the sequence. It indicates 8-possible peptides, Actual presence of 4-different peptides are clearly shown by Lower Logo.

IJISRT21FEB331 www.ijisrt.com 434


Volume 6, Issue 2, February – 2021 International Journal of Innovative Science and Research Technology
ISSN No:-2456-2165
IV. FUTURE WORK AND CONCLUSION [6]. Pappalardo F, Halling-Brown MD, Rapin N, Zhang
P, Alemani D, Emerson A, Paci P, Duroux P,
While Bioinformatics are combined with AI, take Pennisi M, Palladini A, Miotto O, Churchill D,
part, an very significant role in smoothly complicated Rossi E, Shepherd AJ, Moss DS, Castiglione F,
analytics workflows for performing a multi step analysis Bernaschi M, Lefranc MP, Brunak S, Motta S,
within single analytical framework. These type of Lollini PL, Basford KE, Brusic V.ImmunoGrid, an
workflows make processing enabled and to analyse the integrative environment for large-scale simulation of
biological data which are absolutely complicated or the immune system for vaccine discovery, design
complex, and also increasing with an exponential rate. The and optimization. Brief Bioinform. 2009;10(3):330-
complexity of biological question mark and this way 40.
analytical tasks to answer these questions are developing. [7]. Kell DB. Systems biology, metabolic modelling and
The algorithms are going to be more sophisticated, and the metabolomics in drug discovery and development.
capacity (for both processing power and storage) of Drug Discov Today. 2006;11(23-24):1085-92.
computers is being improved. AI techniques which use [8]. Castiglione F, Pappalardo F, Bernaschi M, Motta S.
machine learning, reasoning and knowledge discovery are Optimization of HAART with genetic algorithms
improved continualy. Provided such environment It can be and agent-based models of HIV infection.
observed of increased features of AI in bioinformatics. Key Bioinformatics. 2007;23(24):3350-5. 7
questions which will be directed in the sector of vaccinology [9]. Howe D, Costanzo M, Fey P, Gojobori T, Hannick
involved with the analysis process of antibody-antigen L, Hide W, Hill DP, Kania R, Schaeffer M, St Pierre
interactions and also their diversity , prediction of antibody- S, Twigger S, White O, Rhee SY. Big data: The
antigen interactions as well as broadly-neutralizing future of biocuration. Nature. 2008;455(7209):47-
antibodies-induction are done by the study-experiment of 50.
epidemiological data. Infectious-diseases which lacks of [10]. Brusic V, August JT. The changing field of vaccine
vaccines, like flaviviruses, tuberculosis,influenza hepatitis development in the genomics era.
C,HIV and others is analyzed with in silico when little no. Pharmacogenomics. 2004;5(6):597-600.
of key validatory research experiments will be done. Future [11]. Brusic V, August JT, Petrovsky N. Information
in bioinformatics provides in large-scale analysis operated technologies for vaccine research. Expert Rev
by computational intelligence which however,obviously, Vaccines. 2005;4(3):407-17.
produce large savings in time, money,effort and also speed- [12]. Brusic V, Petrovsky N. Immunoinformatics and its
up the invention of biology. relevance to understanding human immune disease.
Expert Rev Clin Immunol. 2005;1(1):145-57.
ACKNOWLEDGEMENT [13]. Olsen LR, Zhang GL, Keskin DB, Reinherz EL,
Brusic V. Conservation analysis of dengue virus T-
I hereby wish to express my sincere gratitude and cell epitope-based vaccine candidates using Peptide
respect to all staff, JYCSM, Narajole,West Bengal. Their block entropy. Front Immunol. 2011;2:69.
valuable co-operation and encouragement have really led me [14]. Farzin Piltan F, Haghighi TS, Sulaiman N, Nazari I,
to complete this work. Siamak S. Artificial Control of PUMA Robot
Manipulator: A-Review of Fuzzy Inference Engine
REFERENCES and Application to Classical Controller.
International Journal of Robotic and Automation
[1]. Seisen T, Drouin SJ, Phé V, Parra J, Mozer P, Bitker (IJRA), 2011;2(5):401-25.
MO, Cussenot O, Rouprêt M. Current role of [15]. Rizos C, Lilly B, Robertson C and Gambale N.
image-guided robotic radiosurgery (Cyberknife®) Open cut mine machinery automation: Going
for prostate cancer treatment. BJU Int. beyond GNSS with Locata. Proc. 2nd Int. Future
2013;111(5):761-6 Mining Conf., Sydney, Australia, 22-23 November,
[2]. Watson JD, Laskowski RA, Thornton JM. Australasian Institute of Mining & Metallurgy
Predicting protein function from sequence and Publication Series 14, 2011; 87-93.
structural data. Current Opinion in Structural [16]. Klatt DH. Review of text-to-speech conversion for
Biology 2005;15(3):275-84. English. Journal of the Acoustical Society of
[3]. Shen J, Zhang J, Luo X, Zhu W, Yu K, Chen K, Li America, 1987;82(3):737-93.
Y, Jiang H. Predicting protein-protein interactions [17]. Turk MA, Pentland AP. Face recognition using
based only on sequences information. Proc Natl eigenfaces. Proceedings CVPR '91., IEEE Computer
Acad Sci U S A. 2007;104(11):4337-41. Society Conference on Computer Vision and Pattern
[4]. Bessarabova M, Ishkin A, JeBailey L, Nikolskaya T, Recognition, Maui, HI, 3-6 Jun 1991; 586-91.
Nikolsky Y. Knowledge-based analysis of [18]. Peirce N, Conlan O, Wade V. Adaptive Educational
proteomics data. BMC Bioinformatics. 2012;13 Games: Providing Non-invasive Personalised
Suppl 16:S13. Learning Experiences. Second IEEE International 6
[5]. Miotto O, Tan TW, Brusic V. Supporting the Conference on Digital Games and Intelligent Toys
curation of biological databases with reusable text Based Education, Banff, BC, 17-19 Nov. 2008;28-
mining. Genome Inform. 2005;16(2):32-44. 35.

IJISRT21FEB331 www.ijisrt.com 435


Volume 6, Issue 2, February – 2021 International Journal of Innovative Science and Research Technology
ISSN No:-2456-2165
[19]. Hassania H, Soofib AS, Zhigljavskya AA.
Predicting daily exchange rate with singular
spectrum analysis Nonlinear Analysis: Real World
Applications 2010;11(3):2023-34.
[20]. Jacobs JL, Apatov N, Glei M. Increasing vigilance
on the medical/surgical floor to improve patient
safety. J Adv Nurs. 2007;57(5):472-81.
[21]. Fieldston ES, Hall M, Shah SS, Hain PD, Sills MR,
Slonim AD, Myers AL, Cannon C, Pati S.
Addressing inpatient crowding by smoothing
occupancy at children's hospitals. J Hosp Med.
2011;6(8):462-8.
[22]. Sajda P. Machine learning for detection and
diagnosis of disease. Annu Rev Biomed Eng.
2006;8:537-65.

IJISRT21FEB331 www.ijisrt.com 436

You might also like