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583

Regeneration of cofactors for use in biocatalysis


Huimin Zhao and Wilfred A van der Donky

Cofactor-dependent enzymes catalyze many synthetically useful enzymes, such as oxidoreductases and transferases, are
reactions. The high cost of cofactors, however, necessitates capable of performing much more complex chemistry and
in situ cofactor regeneration for preparative applications. After catalyzing a large number of synthetically useful reac-
two decades of research, several cofactors can now be tions. Cofactors are low molecular weight compounds that
effectively regenerated using enzyme or whole-cell based are essential for enzymatic reactions. Certain cofactors
methods. Significant advances have been made in this area in such as pyridoxal phosphate and biotin are tightly bound
the past three years and include the development of novel or to the enzymes and are essentially self-regenerating.
improved methods for regenerating ATP, sugar nucleotides and Others, such as pyridine nucleotides and nucleoside
3-phosphoadenosine-50 -phosphosulphate. These approaches triphosphates (NTPs), act as functional group transfer
have found novel applications in biocatalysis. agents and are cosubstrates that must be used in stoichio-
metric amounts [5]. As these cofactors are too expensive
Addresses to be used as stoichiometric agents for preparative appli-

Department of Chemical and Biomolecular Engineering, University cations, they must be regenerated in situ. Cofactor regen-
of Illinois at Urbana-Champaign, 600 S. Mathews Avenue, eration can also reduce the cost of synthesis by driving the
Urbana, IL 61801, USA
e-mail: zhao5@uiuc.edu
reaction to completion, simplifying product isolation,
y
Department of Chemistry, University of Illinois at Urbana-Champaign, and preventing the accumulation of inhibitory cofactor
600 S. Mathews Avenue, Urbana, IL 61801, USA by-products [3].
e-mail: vddonk@uiuc.edu
A practically useful cofactor regeneration method must
Current Opinion in Biotechnology 2003, 14:583–589
fulfill several requirements. The enzymes, reagents and
equipment required should be readily available, inexpen-
This review comes from a themed issue on sive, easily manipulated and stable under the operational
Chemical biotechnology
conditions. The energetics of the regeneration step
Edited by Frances H Arnold and Anton Glieder
should be favorable both kinetically and thermodynamic-
0958-1669/$ – see front matter ally. Any reagents or by-products of the regeneration step
ß 2003 Elsevier Ltd. All rights reserved. should not interfere with product isolation and should be
DOI 10.1016/j.copbio.2003.09.007
compatible with the rest of the reaction system. Most
importantly, the ‘total turnover number’ (TTN) of the
cofactor should be high [5]. TTN is defined as the total
Abbreviations number of moles of product formed per mole of cofactor
AdK adenylate kinase
ADP adenosine 50 -diphosphate
during the course of a complete reaction [6]. This number
AMP adenosine 50 -monophosphate reflects several factors including the loss of cofactor due to
ATP adenosine 50 -triphosphate degradation or incorrect regiochemistry of regeneration,
CMP-NeuAc cytidine 50 -monophosphate N-acetylneuraminic acid the reaction time, and the catalyst turnover number (kcat).
CTP cytidine 50 -triphosphate
As a rule of thumb, TTNs of 103 to 105 can be sufficient to
GDP-Fuc GDP-fucose
NTP nucleoside triphosphate make a process economically viable depending on the
PAP polyphosphate:AMP phosphotransferase value of the reaction product.
PAPS 3-phosphoadenosine-50 -phosphosulfate
PEP phosphoenolpyruvate In the past two decades, many chemical, enzymatic and
PPK polyphosphate kinase
TTN total turnover number
electrochemical methods have been investigated to
UDP-Gal UDP-galactose regenerate various cofactors [5,7]. Compared with enzy-
UDP-GlcNAc UDP-N-acetylglucosamine matic methods, chemical and electrochemical strategies
UTP uridine 50 -triphosphate often lack the high selectivity required to achieve high
TTNs, and are frequently incompatible with the other
components of the enzymatic reactions. Thus, enzymatic
Introduction methods are presently preferred for cofactor regeneration.
With recent advances in genomics and genetic engineer- As listed in Table 1, many enzymatic approaches have
ing, the use of biocatalysis for industrial synthetic chem- been developed to effectively regenerate various cofac-
istry is growing rapidly [1,2,3,4]. Most of the biocatalysts tors, including adenosine 50 -triphosphate (ATP) regen-
in current use, however, are limited to cofactor-indepen- eration in phosphoryl transfer reactions, NAD(P)þ or
dent enzymes such as hydrolases, which perform relatively NAD(P)H regeneration in oxidoreductions, acetyl CoA
simple chemistry. In comparison, cofactor-dependent regeneration in acyl transfer reactions, sugar nucleotide

www.current-opinion.com Current Opinion in Biotechnology 2003, 14:583–589


584 Chemical biotechnology

Table 1

Common cofactors required for biotransformation and their representative in situ regeneration methods.
Cofactor Reaction type Representative regeneration method References
þ
NAD Removal of hydrogen Glutamate dehydrogenase with a-ketoglutarate [43]
NADH Addition of hydrogen Formate dehydrogenase with formate [44]
NADPþ Removal of hydrogen Glutamate dehydrogenase with a-ketoglutarate [43]
NADPH Addition of hydrogen Glucose dehydrogenase with glucose [45]
ATP Phosphoryl transfer Acetate kinase with acetyl phosphate [46]
Sugar nucleotides Glycosyl transfer Bacterial coupling [47]
CoA Acyl transfer Phosphotransacetylase with acyl phosphate [48]
PAPS Sulfuryl transfer Aryl sulfotransferase IV with p-nitrophenyl sulfate [40]
S-Adenosyl methionine Methyl transfer No demonstrated method [3]
Flavins Oxygenation Self-regeneration [1]
Pyridoxal phosphate Transamination Self-regeneration [1]
Biotin Carboxylation Self-regeneration [1]
Metal porphyrin complexes Peroxidation, oxygenation Self-regeneration [1]

Many flavin-dependent mono-oxygenases or di-oxygenases require additional NAD(P)H as an indirect reducing agent. A first example of
direct regeneration of a flavin-dependent mono-oxygenase was reported recently [41] (see also Update).

regeneration in glycosylations, and 3-phosphoadenosine- synthesis because of the high cost of substrates and
50 -phosphosulfate (PAPS) regeneration in sulfuryl trans- enzymes and, more importantly, because of the degrada-
fer reactions. Some of these have been successfully used tion of the phosphate-containing substrates by uncoupled
in large-scale chemical syntheses [5,7]. enzymes in the cell extracts. In addition, the accumula-
tion of phosphates in the cell-free system will inhibit
In this review, we will discuss new developments in long-term protein synthesis [10]. To address these limita-
cofactor regeneration since 2000. We will focus on new tions, a novel ATP regeneration approach was developed
and improved approaches for regeneration of ATP, sugar for cell-free protein synthesis. This approach takes advan-
nucleotides and PAPS, and their applications in biocata- tage of the endogenous enzymes present in cell extracts
lysis. We will not discuss the recent advances in pyridine and uses glycolytic intermediates such as pyruvate and
nucleotide or nicotinamide cofactor regeneration as this glucose-6-phosphate rather than PEP as energy sources.
topic has been reviewed recently [8]. It was found that with the addition of NADþ, certain
endogenous enzymes can convert pyruvate into acetyl-
ATP/NTP regeneration phosphate, which in turn is converted into acetate with
NTPs are required in many synthetically useful enzyme- concurrent regeneration of ATP. Similarly, glucose-6-
catalyzed phosphoryl transfer reactions. ATP is most phosphate can be first converted into pyruvate and then
frequently used as a phosphorylating agent and hence acetate, with concurrent ATP regeneration occurring in
has received more attention than other NTPs such as each step. As NADþ, pyruvate and glucose-6-phosphate
uridine 50 -triphosphate (UTP) and cytidine 50 -triphos- are much cheaper than PEP, and as the protein syn-
phate (CTP), which have been mainly used as sources thesis yield using these substrates is either comparable
of nucleoside phosphates rather than suppliers of phos- to (for pyruvate/NADþ) or higher than (for glucose-
phate or energy [6]. Several enzyme and whole-cell based 6-phosphate/NADþ) that using PEP, this new ATP
methods have been developed to regenerate ATP from regeneration approach can significantly improve the eco-
adenosine 50 -diphosphate (ADP) [6,9]. Three enzymatic nomic efficiency of cell-free protein synthesis [10].
methods are commonly employed: the use of phospho-
enolpyruvate (PEP) as the phosphate donor in a coupled Another important recent advance in ATP regeneration is
reaction catalyzed by pyruvate kinase; acetylphosphate the use of inorganic polyphosphate (poly(P)) to regener-
coupled with acetate kinase; and polyphosphate coupled ate ATP from adenosine 50 -monophosphate (AMP)
with polyphosphate kinase (PPK). It should be noted that [11,12,13]. An efficient method for regenerating ATP
because these three enzymes have broad substrate spe- from AMP is highly desirable, because many ATP-depen-
cificities, these ATP regeneration methods can also be dent enzymes produce AMP rather than ADP. Poly(P)
used to replenish other NTPs including guanosine 50 - consists of linear polymers of orthophosphate containing
triphosphate (GTP), UTP and CTP from their corre- high-energy phospho anhydride linkages [14,15] and is
sponding nucleoside diphosphates [6,9]. used as a phosphate donor because of its high stability and
low cost. Resnick and Zehnder [13] designed an ATP
Although the above-mentioned ATP regeneration meth- regeneration system using poly(P) and the enzymes poly-
ods are effective for enzyme-catalyzed chemical synth- phosphate:AMP phosphotransferase (PAP) and adenylate
esis, they are not well-suited for cell-free protein kinase (AdK) of Acinetobacter johnsonii. The system was

Current Opinion in Biotechnology 2003, 14:583–589 www.current-opinion.com


Regeneration of cofactors for use in biocatalysis Zhao and van der Donk 585

successfully applied to synthesize glucose-6-phosphate coupled with cytidine 50 -monophosphate N-acetylneur-


with hexokinase. In this process, hexokinase generates aminic acid (CMP-NeuAc) synthetase of Haemophilus
ADP, which is converted by AdK into ATP and AMP. In influenzae to synthesize CMP-NeuAc. It should be noted
turn, the AMP is phosphorylated by PAP to ADP. The that CMP-NeuAc can also be produced by a novel re-
main advantage of this approach lies in the use of rela- combinant E. coli strain containing an acetylphosphate/
tively inexpensive AMP as the initial nucleotide and acetate kinase-based ATP regeneration system [19].
poly(P) as the phosphoryl donor. Current drawbacks that These two studies will be further discussed below.
are likely to be addressed in future research concern the
low TTN (3–4) achieved in this preliminary study and Sugar nucleotide regeneration
the lack of a cloned gene encoding PAP. In conjugation Oligosaccharides and polysaccharides have vital roles in a
with ATP-dependent light-emitting luciferase, this same variety of biological processes including molecular recog-
system was also adapted to detect AMP for hygiene mon- nition and cellular communication in bacterial and viral
itoring and RNA quantification [16]. Shiba and coworkers infection, cancer and the immune response. On this basis,
[11] developed a similar process in which PAP from they have been explored as potential pharmaceuticals
Myxococcus xanthus and a recombinant PPK from Escheri- [20,21]. Among the numerous methods developed for
chia coli were used together to regenerate ATP from AMP oligosaccharide synthesis, glycosyltransferase-mediated
and poly(P). This strategy was successfully used in com- methodology is recognized as one of the most practical
bination with acetyl-CoA synthase to synthesize acetyl- approaches for large-scale preparation, owing to the high
CoA with the addition of inorganic pyrophosphatase regioselectivity and stereoselectivity of these enzymes
(PPase) to alleviate the inhibitory effect of PPi and to [20]. However, glycosyltransferases require a sugar
provide an additional driving force (Figure 1). Compared nucleotide as donor substrate that must be generated
with the PAP–AdK system, this approach appears to in situ for preparative applications by recycling of the
have several advantages, including a TTN for the ATP nucleotide moiety. Although many glycosyltransferases
cofactor of 40 and the ability to regenerate GTP from are involved in the biosynthesis of oligosaccharides, only
GMP using the same system. PAP and PPK accept the low nine sugar nucleotides are used in mammalian systems,
cost phosphate donor poly(P), but unfortunately they are including uridine 50 -diphosphoglucose (UDP-Glc), UDP-
both highly specific for their nucleotide substrate, AMP galactose (UDP-Gal), UDP-glucuronic acid (UDP-
and ADP, respectively [17]; hence, ATP regeneration from GlcUA), CMP-NeuAc, guanosine 50 -diphosphomannose
AMP presently always requires two enzymes. (GDP-Man), GDP-fucose (GDP-Fuc), UDP-N-acetyl-
glucosamine (UDP-GlcNAc), uridine 50 -diphospho-a-D-
As with the ATP regeneration methods from AMP, a xylose (ADP-Xyl) and UDP-N-acetylgalactosamine
novel enzymatic method using poly(P) as sole phosphorus (UDP-GalNAc) [22]. The enzymatic synthesis of these
donor has been developed to regenerate CTP from CMP compounds has been reviewed [23].
[18]. In this strategy, the combined activity of PPK and
cytidine 50 -monophosphate (CMP) kinase from E. coli Recently, several new approaches have been developed to
converts CMP into CDP, while PPK by itself further regenerate sugar nucleotides including UDP-Gal, UDP-
phosphorylates CDP. This regeneration system was Glc, UDP-GlcNAc, CMP-NeuAc and GDP-Fuc for pre-
parative applications. One notable approach is bacterial
coupling, which uses a combination of batches of different
Figure 1 strains of whole cells. For instance Corynebacterium ammo-
niagenes, which efficiently produces UTP from orotic acid,
poly(P)n poly(P)n–1 has been coupled with recombinant E. coli strains expres-
sing the enzymes required for sugar nucleotide genera-
ADP
tion. Importantly, this strategy does not require enzyme
PPK PAP purification or the addition of nucleotides. The approach
has been successfully used for large-scale production
poly(P)n of sugar nucleotides including CMP-NeuAc (17 g l1),
poly(P)n–1 UDP-GlcNAc (7.4 g l1) and GDP-Fuc (18.4 g l1)
PPase [24,25,26]. As illustrated in Figure 2, CMP-NeuAc
ATP AMP + PPi 2Pi can be obtained by the combination of C. ammoniagenes
and two E. coli strains expressing CTP synthetase (con-
verting UTP to CTP) and CMP-NeuAc synthase (con-
Acetate + CoA Acetyl-CoA
Acetyl-CoA synthase verting NeuAc and CTP to CMP-NeuAc), respectively
[24]. Further coupling of the CMP-NeuAc or GDP-Fuc
The PAP-PPK ATP regeneration system from AMP coupled with the
regeneration systems with recombinant E. coli strain(s)
acetyl-CoA synthetic reaction. PPase, inorganic pyrophosphatase. over-expressing desired glycosyltransferase(s) led to large-
(Figure adapted from [11] with permission.) scale production of several important oligosaccharides

www.current-opinion.com Current Opinion in Biotechnology 2003, 14:583–589


586 Chemical biotechnology

Figure 2

Recombinant E. coli #2

NeuAc
neuA Lac
CMP-NeuAc
CTP
Recombinant E. coli #3

Recombinant α-2,3-Sialyltransferase
E. coli #1 CTP
pyrG

3′ -Sialyllactose
UTP CMP
CDP
UDP

Orotic acid UMP

C. ammoniagenes
Current Opinion in Biotechnology

The CMP-NeuAc regeneration system using bacterial coupling. The system consists of C. ammoniagenes, which converts orotic acid into UTP, and
two recombinant E. coli strains expressing the CTP synthetase gene (pyrG) from E. coli K12 and the CMP-NeuAc synthetase gene (neuA) from
E. coli K1, respectively. Further coupling of a recombinant E. coli strain overexpressing the a-(2!3)-sialyltransferase gene from Neisseria gonorrhoeae
led to the large-scale production of 30 -sialyllactose using NeuAc, orotic acid and lactose (Lac) as substrates.

including globotriose, 3’-sialyllactose and Lewis X involved the use of permeabilized harvested cells as
[24,26]. The same strategy was also used to produce whole-cell biocatalysts for oligosaccharide synthesis. In
the sialyl-Tn epitope of the tumor-associated carbohy- the same manner, an artificial gene cluster encoding all
drate antigen [27] and NeuAc [28]. five enzymes in the biosynthetic pathway of Gala1,3Lac
was transferred into an E. coli strain to produce the a-Gal
Owing to the low cost of enzymes and starting materials, epitope [30].
bacterial coupling is a cost-effective method for sugar
nucleotide regeneration. However, because multiple Compared with the above-mentioned whole-cell based
strains are used simultaneously, the transport of reaction approaches for sugar nucleotide regeneration and oligo-
intermediates between strains and the maintenance of saccharide synthesis, enzymatic methods can offer more
cell growth of different strains may be problematic for flexibility in certain cases. In particular, greater produc-
certain applications. To overcome these limitations, a tivity and a simpler process for product isolation can be
new approach using a single recombinant bacterial strain achieved when immobilized enzymes are used. Wang and
(‘superbug’) containing all the necessary enzymes for coworkers [31,32] developed a new enzymatic method
sugar nucleotide regeneration and oligosaccharide synth- for cost-effective UDP-Gal regeneration by immobilizing
esis has been recently demonstrated [19,29,30]. Kim seven enzymes involved in the biosynthesis of UDP-Gal
and coworkers [19] developed a CMP-NeuAc regenera- onto nickel agarose beads. The genes encoding all of the
tion method by co-expressing CMP kinase, sialic acid enzymes were cloned and expressed individually, and the
aldolase and CMP-NeuAc synthetase in a single E. coli corresponding enzymes were immobilized through their
strain. In related work, Wang and coworkers [29] intro- hexahistidine tags to the beads [33]. The formation of
duced an artificial biosynthetic pathway consisting of the UDP-Gal was achieved using a combination of stoichio-
genes encoding a galactosyltransferase, a UDP-galactose metric amounts of UMP and galactose with catalytic
4-epimerase from E. coli K-12 ( galE), and a sucrose quantities of ATP and glucose-1-phosphate, resulting
synthase from Anabaena sp. PCC 7119 (susA) into a single in a 50% yield based on UMP. In a subsequent study,
E. coli strain. By choosing different galactosyltransferases, the methodology was used to prepare several oligosac-
these recombinant strains have been used for large-scale charides including globotriose and the a-Gal epitope
production of the biomedically important trisaccharides [32]. Although this approach has many advantages, the
Gala1,4Lac (globotriose) and Gala1,3Lac (a-Gal epitope) authors point out that, to date, bacterial coupling is still
with the concurrent regeneration of UDP-Gal in a two- more cost effective. Ishige and coworkers [18] described a
step process. The first step entailed the fermentation of new efficient enzymatic method for CMP-NeuAc regen-
the engineered recombinant strain and the second step eration based on purified enzymes. In this method, the

Current Opinion in Biotechnology 2003, 14:583–589 www.current-opinion.com


Regeneration of cofactors for use in biocatalysis Zhao and van der Donk 587

gene encoding a novel CMP-NeuAc synthetase of H. aryl sulfotransferase IV with p-nitrophenyl sulfate as the
influenzae was cloned and the corresponding enzyme sulfate donor. This method proved to be most practical in
was coupled with an enzymatic CTP regeneration system the preparative synthesis of carbohydrate sulfates [40].
discussed in the previous section.
Conclusions
In addition to the nine sugar nucleotides involved in Much of the recent progress in cofactor regeneration has
mammalian glycobiology, the dTDP- and UDP-activated focused on nicotinamide cofactors, ATP, sugar nucleotides
deoxyhexoses involved in secondary metabolism in bac- and PAPS. In the case of ATP regeneration, the use of
teria and plants [34] have received much attention in inexpensive poly(P) as sole phosphorus donor coupled with
recent years for their potential application in reprogram- PAP and PPK/AdK enables the regeneration of ATP from
ming of the structures of antibiotics that are decorated AMP. Because PPK catalyzes the NTP regeneration reac-
with carbohydrates [35]. Many of the glycosyltransferase tion using poly(P) only, it might also be worthwhile engi-
genes have been cloned and chemoenzymatic syntheses neering or discovering PPK with novel nucleotide
of various pyrimidine diphosphosugars with sugar nucleo- monophosphate (NMP) specificity for the construction
tide regeneration have been reported [36–38]. of an NTP regeneration method from NMP. In addition,
a novel ATP regeneration method using glycolytic inter-
PAPS regeneration mediates such as pyruvate and glucose-6-phosphate rather
The cofactor PAPS is the universal sulfate donor in bio- than PEP as energy sources was developed for the cost-
logical systems and is required in the sulfotransferase- effective synthesis of proteins in a cell-free system. Among
catalyzed synthesis of many biologically or therapeutically the several newly developed sugar nucleotide regeneration
important sulfated carbohydrates and glycopeptides. methods, whole-cell approaches using bacterial coupling or
The high cost and instability of PAPS and the produc- a single genetically engineered bacterial strain represent
tion inhibition problem caused by 30 -phosphoadenosine the most efficient and cost-effective routes for production
50 -sulfate requires in situ regeneration of PAPS for of sugar nucleotides and pharmaceutically important oli-
preparative applications. gosaccharides. With the discovery of more bacterial gly-
cosyltransferases from genomics- and proteomics-related
The first enzymatic PAPS regeneration method was research and the development of better protein expression
based on a complex multi-enzyme system consisting of systems, the whole-cell approaches will receive much
ATP sulfurylase, adenosine-50 -phosphosulfate (APS) attention in glycobiotechnology in the near future.
kinase, 30 -nucleotidase, myokinase and pyruvate kinase Furthermore, the development of a novel one-enzyme
[39]. In this process, which mimics the natural metabolic based PAPS regeneration method enables the cost-effec-
cycle, the product generated after sulfate transfer is first tive large-scale production of sulfated carbohydrates. In
converted to ATP using the latter three enzymes; ATP is conjugation with the newly developed sugar nucleotide
subsequently transformed to PAPS by ATP sulfurylase regeneration methods, this PAPS regeneration system is
and APS kinase. Recently, a much simpler, one-enzyme expected to facilitate the production of more complex
PAPS regeneration method has been developed carbohydrates of biological and therapeutic importance.
(Figure 3) [40]. This method uses a recombinant rat liver
Although much progress has been made in the past two
Figure 3 decades, further improvement of the existing regenera-
tion methods for nicotinamide cofactors, ATP/NTP,
Substrate Sulfated product sugar nucleotides and PAPS will be required for their
expected increased application in biocatalysis. Along this
NH2 line, modern protein engineering and metabolic engi-
NH2 Target
N N neering techniques will be increasingly used, taking
PAPS N sulfotransferase N advantage of the advances in genomics, proteomics and
N O N

O O N N
O P O O bioinformatics. Future efforts should also focus on the
O–
O S O P O O O OH development of new methods for cost-effective regenera-
O– O–
O OH
O P O– tion of S-adenosyl methionine (SAM), which currently is
O–
O P O– Aryl an unsolved problem on a preparative scale. It is expected
sulfotransferase
O–
O–
that, with the development of inexpensive and efficient in
O2N OH
O 2N O S O situ regeneration methods for various cofactors, the appli-
O cations of biocatalysis in the pharmaceutical and chemical
p-Nitrophenyl sulfate industries will be greatly expanded in the coming years.
Current Opinion in Biotechnology
Update
A novel PAPS regeneration method comprising a recombinant aryl Hollmann and coworkers [41] recently developed a
sulfotransferase and p-nitrophenyl sulfate. novel chemo-enzymatic approach to directly regenerate

www.current-opinion.com Current Opinion in Biotechnology 2003, 14:583–589


588 Chemical biotechnology

flavin-dependent styrene monooxygenase (StyA) for the 9. Endo T, Koizumi S: Microbial conversion with cofactor
regeneration using genetically engineered bacteria.
first time by means of an organometallic complex Adv Synth Catal 2001, 343:521-526.
[CpRh(bpy)(H2O)]2þ). This organometallic complex 10. Kim DM, Swartz JR: Regeneration of adenosine triphosphate
can catalyze the transhydrogenation reaction between from glycolytic intermediates for cell-free protein synthesis.
Biotechnol Bioeng 2001, 74:309-316.
formate and isoalloxazine-based cofactors such as FAD
and FMN, and thereby substitutes for the native reduc- 11. Kameda A, Shiba T, Kawazoe Y, Satoh Y, Ihara Y, Munekata M,
 Ishige K, Noguchi T: A novel ATP regeneration system using
tase (StyB), the nicotinamide coenzyme (NAD), and an polyphosphate-AMP phosphotransferase and polyphosphate
enzymatic NADH regeneration system such as formate kinase. J Biosci Bioeng 2001, 91:557-563.
The authors show that ATP regeneration from AMP can be achieved
dehydrogenase in StyA-catalyzed epoxidation reactions. efficiently with poly(P) as the inexpensive phosphorus donor for both
phosphorylations.
Similarly, Wagenknecht and coworkers [42] developed a 12. Shiba T, Tsutsumi K, Ishige K, Noguchi T: Inorganic polyphosphate
simple system based on ruthenium (II) and rhodium (III) and polyphosphate kinase: their novel biological functions
and applications. Biochemistry (Mosc) 2000, 65:315-323.
organometallic complexes for the direct coupling of
hydrogen to nicotinamide cofactor regeneration under 13. Resnick SM, Zehnder AJB: In vitro ATP regeneration
 from polyphosphate and AMP by polyphosphate: AMP
conditions appropriate for in situ coupling with enzymatic phosphotransferase and adenylate kinase from Acinetobacter
reductions. The use of hydrogen as a reducing agent is johnsonii 210A. Appl Environ Microbiol 2000, 66:2045-2051.
This report demonstrates that relatively inexpensive AMP can be used as
advantageous compared with other reducing agents; the initial nucleotide in processes that involve ATP-utilizing enzymes that
however, the TTNs of the catalysts are very low. produce either ADP or AMP.
14. Kornberg A: Inorganic polyphosphate — toward making a
Bommarius and coworkers [43] demonstrated for the first forgotten polymer unforgettable. J Bacteriol 1995, 177:491-496.
time that NADH oxidase from Lactobacillus sanfranciscen- 15. Kuroda A, Kornberg A: Polyphosphate kinase as a nucleoside
sis can be used to regenerate both NADþ from NADH diphosphate kinase in Escherichia coli and Pseudomonas
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and NADPþ from NADPH with concomitant reduction
16. Tanaka S, Kuroda A, Kato J, Ikeda T, Takiguchi N, Ohtake H:
of O2 to innocuous H2O. Currently, the turnover number A sensitive method for detecting AMP by utilizing
of the enzyme is still low, but is likely to be amenable to polyphosphate-dependent ATP regeneration and
improvement. bioluminescence reactions. Biochem Eng J 2001, 9:193-197.
17. Ishige K, Noguchi T: Inorganic polyphosphate kinase and
adenylate kinase participate in the polyphosphate: AMP
Acknowledgements phosphotransferase activity of Escherichia coli. Proc Natl Acad
We thank Biotechnology Research and Development Consortium (BRDC) Sci USA 2000, 97:14168-14171.
for supporting our work on developing a phosphite dehydrogenase-based
nicotinamide cofactor regeneration system for reductive biocatalysis. 18. Ishige K, Hamamoto T, Shiba T, Noguchi T: Novel method for
enzymatic synthesis of CMP-NeuAc. Biosci Biotechnol Biochem
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