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Instalando No Kubuntu Linux
Instalando No Kubuntu Linux
OPEN SOURCE
Introduction
A Picture Archiving and Communication System (PACS) is a medical imaging technology which provides
economical storage of and convenient access to images from multiple modalities (source machine types).
In our case we can use it to create pre-production environments to test PACS communications. For
example, we can setup a PACS to send endoscopy images and retrieve radiology samples to an
application.
We are going to use the dcm4chee open source solution from dcm4che.org. This is a JEE and JMX system
which is deployed within the JBoss Application Server to provide a number of clinical services. It may be
used for a variety of different purposes, the most popular being:
As a host, trying to use always open source solutions, we are going to use a GNU/Linux operating system,
speci cally Kubuntu 14.04 LTS (Long Term Supported).
We can nd installation instructions at dcm4chee page, but there are not always updated, so I will show
all the steps for the current versions.
Installation of JDK
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Although we can use the openjdk that comes with kubuntu, we are going to use the one from Oracle.
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http://www.oracle.com/technetwork/java/javase/downloads/jdk8-downloads-2133151.html
And choose the one that ts our platform (x86 tar.gz in my case)
Once decrompressed, just copy the folder to /usr/lib and add the following lines at the end of the
~/.bashrc le:
JAVA_HOME=/usr/lib/jvm/jdk1.8.0_25
PATH=$JAVA_HOME/bin:$PATH
export JAVA_HOME
export PATH
Installation procedure
Use neither JBoss 5 nor JBoss 6, because it is completely re-architected and is signi cantly different than the 4.2
line of JBoss!
If you want to use JDK 5, don’t download JBoss for JDK 6 (jboss-4.2.3.GA-jdk6.zip) – use jboss-4.2.3.GA.zip!
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$export PGUSER=postgres
$createdb pacsdb
$psql pacsdb -f dcm4chee-psql-2.18.0/sql/create.psql
This will create all the database structure. Now we have to setup the database access from dcm4chee. In
your dcm4chee installation, use a text editor to edit server/default/deploy/pacs-postgres-
ds.xml and set the database password. This le controls the dcm4chee connections to the main archive
application database.
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Starting with dcm4chee-2.12.0, the binary distribution package of the archive application does NOT
include the dcm4chee Audit Record Repository (ARR) anymore. The ARR maintains an audit log of all
transactions within the archive. This is necessary for HIPAA and IHE. Some dcm4chee deployment
scenarios call for the deployment of the ARR in a standalone fashion because it acts as an ARR for more
than one dcm4chee instance, or multiple applications which can take advantage of an external ARR.
Commonly though it is deployed within the dcm4chee archive itself.
Download the latest version from soruceforge related with the database we have chosen (postgres in
our case)
Go to the dcm4chee-*-xxx/bin directory and execute the install_arr.sh script with the path of the
dcm4chee-arr-* installation directory as parameter.
NOTE: Due to a bug, we have to modify two lines of the installer dcm4chee-2.18.psql/bin/install_arr.sh
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We have to create the arr database in Postgres and create the structure using the script from the
dcm4chee-arr sql folder:
Now we have to set the ARR database acces. In your dcm4chee installation, use a text editor to
edit server/default/deploy/arr-psql-ds.xml and set the database password. This le control the
dcm4chee connections to the Audit Record Repository (ARR) database.
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If you choose to add in the ~/.bashrc le, remember the PACS would not start unless you start the session.
Linux/Unix/OSX: dcm4chee-2.xx-xxx/bin/run.conf
according to available RAM and memory requirements of other processes on this node.
E.g.: if only 512 MB RAM are available, you should decrease the default value -Xmx512m to (e.g.) -
Xmx300.
=========================================================================
JBOSS_HOME: /home/daniel/Downloads/dcm4chee-2.18.0-psql
JAVA: /usr/lib/jvm/jdk1.8.0_25/bin/java
2.18.0-psql/bin/native
CLASSPATH: /home/daniel/Downloads/dcm4chee-2.18.0-
psql/bin/run.jar:/usr/lib/jvm/jdk1.8.0_25/lib/tools.jar
=========================================================================
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If no Storage File System is con gured, the archive will auto-con gure dcm4chee-2.xx.1-
xxx/server/default/archive as Storage File System, when receiving the rst object/image.
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Follow the link “service=AE” to the con guration page for AE (Application Entity – a DICOM term for a
DICOM node on the network) service under the “dcm4chee.archive” heading.
Invoke the operation update AETitle with the old AE Title (DCM4CHEE if unchanged from the default),
and new AE Title as parameters.
This will update the following con gurations:
update the “retrieve AET” of le systems, associated to the current retrieve AET of this node
update “retrieve AETs” of all instances, series and studies that have les on these lesystems
update the entry for the “retrieve AE” in the AE Con guration
update the AE Title of all services listed by attribute OtherServiceAETitleAttributesToUpdate
After verifying that the archive works, you may want to run it as a service so that it stays running even
when you loguses
This website out.cookies
If still running in the
to improve yourconsole window,
experience. We'llyou mayyou're
assume stop the archive
ok with this, by
butCtrl+C,
you canand copy
opt-out if the
you
init script dcm4chee_init_redhat.sh to /etc/init.d/ and adjust
wish. Accept it according your installation location of the
Reject
archive and the JDK and under which user the archive application shall run.
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DICOM PACS
Beginner
15/06/2016 AT 8:40 AM
Hi,
I need help in installing DCM4CHEE.. I have downloaded and extracted all the above said les with
the paths:
C:\apps\dcm4chee-2.18.3-mysql
C:\apps\jboss-4.2.3.GA
but when i try to install jboss ,
C:\apps\dcm4chee-2.18.3-mysql\bin>install_jboss.bat C:\apps\jboss-4.2.3.GA
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it shows
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Daniel
16/06/2016 AT 10:08 PM
Hi,
Please, could you post the content of install_jboss.bat? Which OS are you using?
Regards,
Daniel
16/06/2016 AT 10:06 PM
Hi Rob,
Regards,
Daniel
Beginner
20/06/2016 AT 10:15 AM
Hi Daniel
i sorted out the problem.. its becoz dcm4chee-2.18.3-mysql version doesnt have an install_jboss.bat
le within the folder.. so i tried other version dcm4chee-2.18.1-mysql. Everything seems ok until i
reached the veri cation test. when i execute run.bat it shows error ( I am using Windows10)
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JBOSS_HOME: C:\apps\dcm4chee-2.18.1-mysql
JAVA_OPTS: -Djava.library.path=”C:\apps\dcm4chee-2.18.1-mysql\bin\native” -
Dprogram.name=run.bat -server -Xms128m -Xmx512m -XX:MaxPermSize=128m -
Djboss.messaging.ServerPeerID=0 -
Djavax.xml.transform.TransformerFactory=com.sun.org.apache.xalan.internal.xsltc.trax.Transformer
FactoryImpl -Dsun.rmi.dgc.client.gcInterval=3600000 -Dsun.rmi.dgc.server.gcInterval=3600000 -
Dapp.name=dcm4chee
Daniel
21/06/2016 AT 8:51 PM
Hi,
It seems it does not nd the mysql command. Could you edit the run.bat le and include the full pah
to the mysql command?
Beginner
24/06/2016 AT 7:07 AM
Hi Daniel,
I am sorry that i need more help since m a newbie to programming.. how should i give path to mysql?
This@if
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%ECHO%
@if “%OS%” == “Windows_NT” setlocal
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set DIRNAME=.\
if “%OS%” == “Windows_NT” set DIRNAME=%~dp0%
set PROGNAME=run.bat
if “%OS%” == “Windows_NT” set PROGNAME=%~nx0%
pushd %DIRNAME%..
set JBOSS_HOME=%CD%
popd
REM
REM The %ARGS% env variable commented out in favor of using %* to include
REM all args in java command line. See bug #840239. [jpl]
REM
REM set ARGS=
REM :loop
REM if [%1] == [] goto endloop
REM set ARGS=%ARGS% %1
REM shift
REM goto loop
REM :endloop
set RUNJAR=%JBOSS_HOME%\bin\run.jar
if exist “%RUNJAR%” goto FOUND_RUN_JAR
echo Could not locate %RUNJAR%. Please check that you are in the
echo bin directory when running this script.
goto END
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:FOUND_RUN_JAR wish. Accept Reject
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set JAVA=java
:ADD_TOOLS
set JAVA=%JAVA_HOME%\bin\java
rem A full JDK with toos.jar is not required anymore since jboss web packages
rem the eclipse jdt compiler and javassist has its own internal compiler.
if not exist “%JAVA_HOME%\lib\tools.jar” goto SKIP_TOOLS
rem If exists, point to the JDK javac compiler in case the user wants to
rem later override the eclipse jdt compiler for compiling JSP pages.
set JAVAC_JAR=%JAVA_HOME%\lib\tools.jar
:SKIP_TOOLS
set JBOSS_CLASSPATH=%RUN_CLASSPATH%
Thisrem
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as appropriate.
set JAVA_OPTS=%JAVA_OPTS% -Xms128m -Xmx512m
wish. Accept -XX:MaxPermSize=128m
Reject
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rem Specify the ID of the ServerPeer used by JBoss Messaging. Must be unique per JBoss instance
set JAVA_OPTS=%JAVA_OPTS% -Djboss.messaging.ServerPeerID=0
rem Uncomment to enable the jconsole agent remotely on port 12345 with disabled security and ssl
transport
rem set JAVA_OPTS=%JAVA_OPTS% -Dcom.sun.management.jmxremote.port=12345
rem set JAVA_OPTS=%JAVA_OPTS% -Dcom.sun.management.jmxremote.authenticate=false
rem set JAVA_OPTS=%JAVA_OPTS% -Dcom.sun.management.jmxremote.ssl=false
rem With Sun JVMs reduce the RMI GCs to once per hour
set JAVA_OPTS=%JAVA_OPTS% -Dsun.rmi.dgc.client.gcInterval=3600000 -
Dsun.rmi.dgc.server.gcInterval=3600000
rem JPDA options. Uncomment and modify as appropriate to enable remote debugging.
rem set JAVA_OPTS=-Xdebug -Xrunjdwp:transport=dt_socket,address=8787,server=y,suspend=y
%JAVA_OPTS%
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echo
============================================================================
===
echo.
echo JBoss Bootstrap Environment
echo.
echo JBOSS_HOME: %JBOSS_HOME%
echo.
echo JAVA: %JAVA%
echo.
echo JAVA_OPTS: %JAVA_OPTS%
echo.
echo CLASSPATH: %JBOSS_CLASSPATH%
echo.
echo
============================================================================
===
echo.
:RESTART
“%JAVA%” %JAVA_OPTS% “-Djava.endorsed.dirs=%JBOSS_ENDORSED_DIRS%” -classpath
“%JBOSS_CLASSPATH%” org.jboss.Main -b %JBOSS_BIND_ADDR% %*
if ERRORLEVEL 10 goto RESTART
:END
if “%NOPAUSE%” == “” pause
:END_NO_PAUSE
Daniel
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1:05 PMto improve your experience. We'll assume you're ok with this, but you can opt-out if you
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Beginner
05/07/2016 AT 7:19 AM
Hi
I successfully installed dcm4chee and got login screen in webconsole and jmx console. I tried to
upload a dicom le to dcm4chee using command :
dcmsnd DCM4CHEE@localhost:11112 D:\dicom
It gives error as :
Scanning les to send
.
Scanned 1 les in 0.034s (=34ms/ le)
11:40:13,756 INFO – Association(1) initiated
Socket[addr=localhost/127.0.0.1,port=11112,localport=55823]
11:40:13,759 INFO – DCM4CHEE(1): A-ASSOCIATE-RQ DCM4CHEE <> DCM4CHEE
Connected to DCM4CHEE@localhost:11112 in 0.073s
11:40:13,813 INFO – DCM4CHEE(1) <> 1:C-STORE-RSP[pcid=1, status=110H
error=java.lang.RuntimeException: Failed to invoke ‘selectStorageFileS
cuid=1.2.840.10008.5.1.4.1.1.7/Secondary Capture Image Storage
iuid=2.16.124.113543.6004.101.103.20021117.190619.1.002.001]
ERROR: Received RSP with Status 0110H for D:\dicom\TG18-BR-1k-01.dcm,
cuid=1.2.840.10008.5.1.4.1.1.7, tsuid=1.2.840.10008.1.2
(0000,0002) UI #26 [1.2.840.10008.5.1.4.1.1.7] Affected SOP Class UID
(0000,0100) US #2 [32769] Command Field
(0000,0120) US #2 [1] Message ID Being Responded To
(0000,0800) US #2 [257] Command Data Set Type
(0000,0900) US #2 [272] Status
(0000,0902) LO #64 [java.lang.RuntimeException: Failed to invoke ‘selectStorageFileS] Error
Comment
(0000,1000) UI #54 [2.16.124.113543.6004.101.103.20021117.190619.1.002.001] Affected SOP
Instance UI
F
Sent 0 objects (=0.0KB) in 0.636s (=0.0KB/s)
This11:40:14,436
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<> A-RELEASE-RP
Released connection to DCM4CHEE@localhost:11112
wish. Accept Reject
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Daniel
05/07/2016 AT 9:54 PM
Hi,
It seems there is run out of space. Sorry, but I can’t help you. If you google it for this error, you will
nd information:
https://groups.google.com/forum/#!topic/dcm4che/uJ87PCK4lvY
http://www.dcm4che.org/jira/browse/DCMEE-1095
Regards,
Kevin
20/03/2017 AT 8:54 AM
Daniel
22/03/2017 AT 10:00 PM
Samuel Vazquez
13/01/2019 AT 11:23 PM
Hi Dany , i have a DCMROUTER install OK this DCM have Weasys, ando Oviyam, but I need setup a
second aetitle
it`s Work ne whit the default Parameters Por 11112 Aetitle DCM4CHEE, now need con gure a
second Port and Aetitle
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Samuel VL
Daniel
23/01/2019 AT 10:12 PM
Hi Samuel,
It’s been a while since I played with dcm4chee. Perhaps you will nd some clue inside the AE Title
con guration documentation:
https://dcm4che.atlassian.net/wiki/spaces/ee2/pages/2555914/AE+Title+Con guration+Service
Raja
08/12/2020 AT 4:01 PM
Hi,
I got the below error after logged in, can you please help me to resolve this error
Internal error
Daniel
11/12/2020 AT 6:36 PM
Hi Raja,
Did you use the same java version as the one speci ed? And the same JBoss?
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