ch

1
2
r1
m
Chr

ch rk
r1 16
m
ch rk3
r1 1
m
ch rk6
r1 4
m

0
ch rk7
r1 5
ch mrk
r1 9
m 3
ch rk1
r1 11
m
ch rk1
r1 3
m 8
ch rk1
r1 4
m 5
ch rk1
r1 6
m 0
ch rk1
r1 8
m 2
ch rk2
r1 2
m 0
ch rk2
1

r1 4
m 2
ch rk2
r1 6
m 0
ch rk2
r1 7
m 8
ch rk2
r1 9
m 9
ch rk3
r1 1
m 0
ch rk3
r1 4
m 6
ch rk3
r1 7
m 0

10
ch rk4
r1 0
m 3
ch rk4
r1 2
m 5
ch rk4
r1 5
m 1
ch rk4
r1 6
m 9
r
ch k48
r2 5
m
ch rk1
r2 0
m
ch rk2
r2 9
m
ch rk4
r2 1
m
ch rk4
r2 8
m
ch rk5
r2 4
m
ch rk6
r2 9
m
ch rk8
r2 2
ch mrk
r2 98
m
ch rk1
r2 1

20
m 7
ch rk1
r2 3
m 1
ch rk1
r2 5
m 5
ch rk1
r2 6
m 8
ch rk1
r2 7
m 9
ch rk1
r2 8
m 9
ch rk2
r2 1
m 4
ch rk2
r2 2
m 8
ch rk2
r2 4
m 4
ch rk2
r2 5
m 4

Color Key: LOD score

ch rk2
r2 7
m 0
2

ch rk2
r2 7
m 7
ch rk2
r2 9
m 0
ch rk2
r2 9
m 7
ch rk3
0

30
r2
m 5
ch rk3
r2 2
m 4
ch rk3
r2 3
m 3
ch rk3
r2 4
m 6
ch rk3
5
Two−point LOD score: sim_BC1_GE Scaffold

r2
m 4
ch rk3
r2 6
m 6
ch rk3
r2 7
m 4
ch rk3
r2 8
m 4
ch rk4
r2 0
m 1
ch rk
r2 41
m 0
ch rk4
r2 3
m 6
ch rk4
r2 4
m 8
ch rk4
r2 51
m
ch rk4
r2 6
m 5
ch rk4

40
r2 7
m 7
rk
48
8

ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch
r1 r
m 1m r1m r1m r1m r1m r1m r1m r1m r1m r1m r1m r1m r1m r1m r1m r1m r1m r1m r1m r1m r1m r1m r2m r2m r2m r2m r2m r2m r2m r2m r2m r2m r2m r2m r2m r2m r2m r2m r2m r2m r2m r2m r2m r2m r2m r2m r2m r2m r2m r2m r2m r2m r2m r2m r2m r2m r2m r2m r2m r2m
rk r r r r r r r r r r r r r r r r r r r r r r r r r r r r r r r r r r r r r r r r r r r r r r r r r r r r r r r r r r
16 rk3 k64 k75 k93 k11 k13 k14 k16 k18 k22 k24 k26 k27 k29 k31 k34 k37 k40 k42 k45 k46 k48 k10 k29 k41 k48 k54 k69 k82 k98 k11 k13 k15 k16 k17 k18 k21 k22 k24 k25 k27 k27 k29 k29 k30 k32 k33 k34 k35 k36 k37 k38 k40 k41 rk4 k44 k45 k46 k47 k48
1 1 8 5 0 2 0 2 0 8 9 0 6 0 3 5 1 9 5 7 1 5 8 9 9 4 8 4 4 0 7 0 7 5 4 3 6 4 6 4 4 1 0 36 8 1 5 7 8
 ch

1
2
r1
m
Chr

ch rk
r1 16
m
ch rk3
r1 1
m
ch rk6
r1 4
m

0
ch rk7
r1 5
ch mrk
r1 9
m 3
ch rk1
r1 11
m
ch rk1
r1 3
m 8
ch rk1
r1 4
m 5
ch rk1
r1 6
m 0
ch rk1
r1 8
m 2
ch rk2
r1 2
m 0
ch rk2
1

r1 4
m 2
ch rk2
r1 6
m 0
ch rk2
r1 7
m 8
ch rk2
r1 9
m 9
ch rk3
r1 1
m 0
ch rk3
r1 4
m 6
ch rk3
r1 7
m 0
ch rk4
r1 0
m 3
ch rk4
r1 2
m 5
ch rk4
r1 5
m 1
ch rk4
r1 6
m 9
r

50
ch k48
r2 5
m
ch rk1
r2 0
m
ch rk2
r2 9
m
ch rk4
r2 1
m
ch rk4
r2 8
m
ch rk5
r2 4
m
ch rk6
r2 9
m
ch rk8
r2 2
ch mrk
r2 98
m
ch rk1
r2 1
m 7
ch rk1
r2 3
m 1
ch rk1
r2 5
m 5
ch rk1
r2 6
m 8
ch rk1
r2 7
m 9
ch rk1
r2 8
m 9
ch rk2
r2 1
m 4
ch rk2
r2 2
m 8
ch rk2
r2 4
m 4
ch rk2
r2 5
m 4
ch rk2

100
r2 7
m 0
2

ch rk2
r2 7
m 7
ch rk2
r2 9
m 0
ch rk2
r2 9
m 7
ch rk3
r2 0
m 5
ch rk3
r2 2
m 4

Color Key: Genetic Distance (cM)

ch rk3
r2 3
m 3
ch rk3
r2 4
m 6
ch rk3
r2 5
m 4
ch rk3
r2 6
m 6
ch rk3
r2 7
m 4
ch rk3
r2 8
m 4
ch rk4
r2 0
m 1
ch rk
Two−point Genetic Distance (cM): sim_BC1_GE Scaffold

r2 41
m 0
ch rk4
r2 3
m 6
ch rk4
r2 4
m 8
ch rk4
r2 51
m
ch rk4
r2 6
m 5
ch rk4
r2 7
m 7

150
rk
48
8

ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch ch
r1 r
m 1m r1m r1m r1m r1m r1m r1m r1m r1m r1m r1m r1m r1m r1m r1m r1m r1m r1m r1m r1m r1m r1m r2m r2m r2m r2m r2m r2m r2m r2m r2m r2m r2m r2m r2m r2m r2m r2m r2m r2m r2m r2m r2m r2m r2m r2m r2m r2m r2m r2m r2m r2m r2m r2m r2m r2m r2m r2m r2m r2m
rk r r r r r r r r r r r r r r r r r r r r r r r r r r r r r r r r r r r r r r r r r r r r r r r r r r r r r r r r r r
16 rk3 k64 k75 k93 k11 k13 k14 k16 k18 k22 k24 k26 k27 k29 k31 k34 k37 k40 k42 k45 k46 k48 k10 k29 k41 k48 k54 k69 k82 k98 k11 k13 k15 k16 k17 k18 k21 k22 k24 k25 k27 k27 k29 k29 k30 k32 k33 k34 k35 k36 k37 k38 k40 k41 rk4 k44 k45 k46 k47 k48
1 1 8 5 0 2 0 2 0 8 9 0 6 0 3 5 1 9 5 7 1 5 8 9 9 4 8 4 4 0 7 0 7 5 4 3 6 4 6 4 4 1 0 36 8 1 5 7 8