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Polyhedron: Xiao-Yan Chen, George S. Goff, Brian L. Scott, Wolfgang Runde
Polyhedron: Xiao-Yan Chen, George S. Goff, Brian L. Scott, Wolfgang Runde
Polyhedron: Xiao-Yan Chen, George S. Goff, Brian L. Scott, Wolfgang Runde
Polyhedron
journal homepage: www.elsevier.com/locate/poly
a r t i c l e i n f o a b s t r a c t
Article history: As a continuation of our previous studies of light lanthanides (La, Ce, Pr, and Nd) with (Pyrazol-1-yl)acetic
Received 1 August 2013 acid (L), we reacted L with the heavier lanthanides in aqueous solution at pH 5 and synthesized lantha-
Accepted 14 October 2013 nide complexes of the general formula [Ln(L)3(H2O)2]H2O (Ln = Eu, 1; Gd, 2; Dy, 3; Ho, 4; Er, 5; Yb, 6; Lu,
Available online 19 October 2013
7) and [HoL(NO3)2(H2O)3] (8). All complexes were characterized by single crystal X-ray diffraction anal-
ysis revealing one-dimensional chain formations. Three distinct crystallographic structures are governed
Keywords: by the different coordination modes of the carboxylate groups in L: terminal bidentate, bridging biden-
Rare earth compounds
tate and tridentate coordination in 1–3, terminal and bridging bidentate coordination in 4–7, and bridg-
(Pyrazol-1-yl)acetic acid
Crystal structures
ing bidentate coordination in 8. The solid state UV–Vis–NIR diffuse reflectance spectra and the solution
Optical spectroscopy UV–Vis–NIR absorption spectra differ, suggesting different coordination environments in solution and
solid state. The coordination-induced shifts of the 13C NMR signals for [Lu(L)3(H2O)2]H2O (7) in D2O show
that the carboxylate groups of the ligand are coordinated with the Lu(III) ion in solution.
Ó 2013 Elsevier Ltd. All rights reserved.
0277-5387/$ - see front matter Ó 2013 Elsevier Ltd. All rights reserved.
http://dx.doi.org/10.1016/j.poly.2013.10.015
X.-Y. Chen et al. / Polyhedron 68 (2014) 80–86 81
Yb, 6; Lu, 7) and [HoL(NO3)2(H2O)3] (8) which have been synthe- 5; Yb, 6; Lu, 7) and [HoL(NO3)2(H2O)3] (8). Photographs of the crys-
sized and structurally characterized by single crystal X-ray diffrac- tals are shown in Fig. 1.
tion. Spectroscopic methods (Raman, UV–Vis–NIR absorbance,
diffuse reflectance, and 13C NMR spectroscopies) were used to ex- 3.1. Single crystal X-ray diffraction studies
plore the coordination chemistry in solution and solid state.
Crystal data collection and refinement details for complexes
1–8 are listed in Tables 1 and 2, while selected bond lengths and
2. Experimental methods angles are provided in the Supporting information (Table S1). Com-
pared to the previously reported structures of lanthanides with
Pyrazole (98%) was used as received from Acros. All other chem- pyrazole-3,5-dicarboxylic acid [10], L only has one carboxylate
icals were purchased from Fisher Scientific, Inc., and solutions were group and the acetic acid is substituted directly to one of the
prepared with distilled deionized water (specific resis- N atom of the pyrazole ring. This substitution excludes the other
tance P 18.0 MX cm). (Pyrazol-1-yl)acetic acid (L) was prepared N atom from chelating lanthanides, leading to the formation of
as described in the literature [14]. Stock solutions of L (1 M) were one-dimensional chains for complexes 1–8. The different coordina-
prepared gravimetrically by dissolving L in water with the pH ad- tion modes of L observed in 1–3 (terminal bidentate, bridging
justed to 5 by adding NaOH. bidentate and tridentate), 4–7 (terminal and bridging bidentate),
Lanthanide stock solutions were prepared by dissolving and 8 (bridging bidentate) result in two distinct crystallographic
Ln(NO3)36H2O (99.99% purity) in water. Seven lanthanide(III) structures.
complexes (Eu (1), Gd (2), Dy (3), Ho (4), Er (5), Yb (6), and Lu
(7)) with L were prepared under mild conditions by adding 1 mL 3.1.1. Structural characterization of heavy lanthanide complexes of the
of a 1 M Ln(III) nitrate stock to 3 mL of the L stock solution (1 M) type [Ln(L)3(H2O)2]H2O
in a 20 mL borosilicate scintillation vial. The vial was capped and Complexes 4–7 are isostructural, crystallizing in the monoclinic
crystallization of the lanthanide compounds occurred at room tem- space group P21/n. Two coordination modes of L are evident in
perature within a couple of days. During the crystallization, the these complexes: terminal bidentate (Scheme 1a) and bridging
solution pH remained constant at 5. [HoL(NO3)2(H2O)3] (8) was bidentate (Scheme 1b). Fig. 2 shows the coordination environment
prepared in the same method using a 1:1 metal to ligand ratio. of Ho3+ in complex 4 as a representative example. The unit cell of 4
Crystals of 1–8 were isolated and their structures were determined contains the one lanthanide, three L and three water molecules.
by single crystal X-ray diffraction. The Ho3+ atom is eight-coordinate with two oxygen atoms from
Crystals were removed from the solutions, mounted using a ny- terminal bidentate L, four oxygen atoms from bridging bidentate
lon cryoloop and Paratone-N oil, and cooled with a liquid nitrogen L, and two water molecules completing the square antiprismatic
vapor stream. The data were collected on a Bruker D8 diffractom- coordination geometry. Bidentate bridging of L in 4 connects Ho1
eter with an APEX II charge-coupled-device (CCD) detector and a and Ho1B with a distance of 4.525(1) Å. The least squares planes
Bruker Kryoflex low temperature device. The instrument was of the pyrazole and carboxylate group L show a dihedral angle of
equipped with a graphite monochromatized Mo Ka X-ray source 74.55(2)°. The O3–C6–O4 angle is 122.4(2)°. In the second biden-
(k = 0.71073 Å). A hemisphere of data was collected using x scans, tate bridging L, the carboxylate group bridges Ho1 and Ho1A with
with 10-s frame exposures and 0.5° frame widths. Data collection the Ho–O bond lengths of 2.336(2) and 2.264(2) Å. The resulting
and initial indexing and cell refinement were handled using APEX Ho1 Ho1A distance is 4.895(1) Å. The difference between the
II software [16]. Frame integration, including Lorentz-polarization two C–O bond lengths in a single carboxylate group of L follows
corrections, and final cell parameter calculations were carried out a different order in 4: terminal bidentate (0.01 Å) > bridging biden-
using SAINT+ software [17]. The data were corrected for absorption tate (0.001 Å). Such a trend indicates the weakest electron delocal-
using redundant reflections and the SADABS program [18]. Decay of ization occurs in the carboxylate group of the terminal bidentate L,
reflection intensity was not observed as monitored via analysis of totally opposite from the previous observation. The bidentate
redundant frames. The structure was solved using direct methods bridging L links neighboring Ho3+ ions to form a one-dimensional
and difference Fourier techniques. Hydrogen atom positions were chain structure with alternating Ho Ho distances of 4.525(1)
idealized on methyl and pyrazole rings, but were not refined on and 4.895(1) Å (Fig. 3).
water molecules. The final refinement included anisotropic tem-
perature factors on all non-hydrogen atoms. Structure solution, 3.1.2. Structural characterization of [HoL(NO3)2(H2O)3]
refinement, and creation of publication materials were performed Complex 8 was obtained by varying the metal to ligand ratio to
using SHELXTL [19]. 1:1 and crystallizes in the monoclinic space group P21/c. In con-
Raman spectra of solid samples were collected for all com- trast to the eight-coordinate Ho in (4), the Ho in 8 is nine-coordi-
pounds using a Thermo Scientific DXR SmartRaman spectrometer nate with two oxygen atoms from two bridging bidentate L
with a 780 nm excitation laser. Diffuse reflectance spectra were molecules (Scheme 1b), four oxygen atoms from two nitrate an-
measured for ground single crystals using a Cary 5 UV–Vis–NIR ions, and three coordinated water molecules (Fig. 4). The coordina-
spectrophotometer with a diffuse reflectance attachment, while tion geometry of Ho3+ can be described as a tricapped trigonal
solution absorbance spectra were obtained by using a Cary 5 prism. Bidentate L bridges the Ho3+ ions to form an extended chain
UV–Vis–NIR spectrophotometer. Complex 7 was characterized by structure along the c axis with the Ho1–O1 and Ho1A–O2 bond
13
C NMR spectroscopy in D2O at room temperature on a Bruker lengths of 2.293(2) and 2.256(1) Å, respectively. The difference be-
ARX-300 spectrometer equipped with 5- and 10-mm multinuclear tween the bond lengths of C1–O1 (1.250(2) Å) and C1–O2
probes. The frequency was 75 MHz for the 13C nuclei. (1.264(2) Å) is larger than that of the bidentate bridging ligands
in complex 4, indicating a weaker electron delocalization. The
Ho Ho distance is 5.704(1) Å, which is significantly larger than
3. Results and discussion that in complex 4 (4.895(1) Å). The average Ho–O bond length
for coordinated water molecules of 2.391(2) Å is comparable to
The reaction of seven lanthanides with (pyrazol-1-yl)acetic acid that in 4 (2.378(2) Å). The pyrazole rings in the one-dimensional
(L) resulted in the formation of crystalline complexes with the gen- chain are almost parallel to each other with the dihedral angle of
eral formula [Ln(L)3(H2O)2]H2O (Ln = Eu, 1; Gd, 2; Dy, 3; Ho, 4; Er, 1.86(9)°.
82 X.-Y. Chen et al. / Polyhedron 68 (2014) 80–86
Fig. 1. Photographs of single crystals [Ln(L)3(H2O)2]H2O, Ln = Eu (A), Gd (B), Dy (C), Ho (D), Er (E), Yb (F), and Lu (G) and [HoL(NO3)2]3H2O (H).
Table 1
Selected crystal data and structure refinements for [Ln(L)3(H2O)2]H2O (Ln = Eu, 1; Gd, 2; Dy, 3; Ho, 4).
1 2 3 4
T (K) 140(1) 140(1) 140(1) 140(1)
Formula C15H21EuN6O9 C15H21GdN6O9 C15H21DyN6O9 C15H21HoN6O9
Formula weight 581.34 586.63 591.88 594.31
Crystal system monoclinic monoclinic monoclinic monoclinic
Space group P21/n P21/n P21/n P21/n
a (Å) 9.2515(5) 9.2490(7) 9.2976(8) 9.348(1)
b (Å) 15.3810(8) 15.3574(11) 15.2803(13) 15.2182(16)
c (Å) 14.4142(7) 14.4077(11) 14.3756(13) 14.3622(15)
b (°) 100.2910(10) 100.360(1) 100.969(1) 101.452(1)
V (Å3) 2018.11(18) 2013.1(3) 2005.0(3) 2002.5(4)
Z 4 4 4 4
q (g/cm3) 1.913 1.936 1.961 1.971
l (mm 1) 3.170 3.357 3.790 4.014
F(0 0 0) 1152 1156 1164 1168
Crystal size (mm) 0.24 0.06 0.02 0.22 0.04 0.02 0.24 0.06 0.04 0.20 0.06 0.04
h (°) 1.95–28.45 1.96–28.43 1.96–28.35 1.97–28.52
Index ranges 12 6 h 6 12, 12 6 h 6 12, 12 6 h 6 12, 12 6 h 6 12,
20 6 k 6 20, 20 6 k 6 20, 20 6 k 6 20, 20 6 k 6 20,
19 6 l 6 19 18 6 l 6 19 19 6 l 6 18 19 6 l 6 19
Minimum and maximum transmission 0.5166 and 0.9393 0.5254 and 0.9359 0.4632 and 0.8632 0.5007 and 0.8559
Goodness-of-fit (GOF) on F2 1.493 0.773 1.569 1.128
R1, R2 [I > 2r(I)] 0.0218, 0.0619 0.0243, 0.0844 0.0220, 0.0634 0.0232. 0.0474
R1, R2 (all data) 0.0263, 0.0637 0.0315, 0.0948 0.0259, 0.0650 0.0302, 0.0501
3
Largest difference in peak and hole (e Å ) 1.032, 0.765 0.948, 1.530 0.889, 0.842 0.666, 0.715
3.1.3. Structural characterization of intermediate lanthanide [Nd(L)3(H2O)2]H2O [15]. The Eu1–O3 and Eu1–O4 bond lengths
complexes of the type [Ln(L)3(H2O)2]H2O are 2.451(2) and 2.716(2) Å, respectively, which are more diverged
Complexes 1–3 are isostructural with the previously published than the corresponding Nd–O distances (2.501(2) and 2.705(2) Å)
structure of [Nd(L)3(H2O)2]H2O [15], crystallizing in the mono- in [Nd(L)3(H2O)2]H2O [15]. The Eu1B–O4 bond length
clinic space group P21/n, with bidentate and tridentate bridging (2.406(2) Å) with the bridging l3–oxygen atom is shorter than
(Scheme 1c) ligands forming an extended one-dimensional chain. those of Eu1–O3 and Eu1–O4. The Eu1–O4–Eu1B bond angle is
In the following, complex 1 is chosen to discuss the crystallo- 116.18(7)°, which is similar to that of Nd–O–Nd (115.93(8)°) in
graphic features found in complexes 1–3. The unit cell contains [Nd(L)3(H2O)2]H2O [15]. For the tridentate bridging L, the C-O
one unique Eu3+ center, three deprotonated ligands as monoanions bond lengths of the carboxylate group are 1.247(3) and
and two coordinated water molecules with one lattice water mol- 1.268(3) Å, which suggest that there is some electron delocaliza-
ecules (Fig. 5). As observed previously for [Nd(L)3(H2O)2]H2O [15], tion in the carboxylate groups compared with the C–O bond
three coordination modes of L are present in complex 1: terminal lengths of the carboxylate group in the free ligand (1.207(2) and
bidentate, bridging bidentate and tridentate modes. The tridentate 1.309(2) Å) [14]. Such electron delocalization is even larger than
bridging L links Eu1 and Eu1B with a distance of 4.351(1) Å, which that in [Nd(L)3(H2O)2]H2O (C–O, 1.243(3) and 1.274(3) Å) [15].
is slightly shorter than the Nd Nd distance (4.379(1) Å) in Within the tridentate ligand, the dihedral angle of the least squares
X.-Y. Chen et al. / Polyhedron 68 (2014) 80–86 83
Table 2
Selected crystal data and structure refinements for [Ln(L)3(H2O)2]H2O (Er, 5; Yb, 6; Lu, 7) and [HoL(NO3)2(H2O)3] (8).
5 6 7 8
T (K) 293(2) 140(1) 140(1) 140(1)
Formula C15H21ErN6O9 C15H21N6O9Yb C15H21LuN6O9 C5H11HoN4O11
Formula weight 596.64 602.42 604.35 468.11
Crystal system monoclinic monoclinic monoclinic monoclinic
Space group P21/n P21/n P21/n P21/c
a (Å) 9.4051(7) 9.4451(7) 9.4740(8) 11.0734(8)
b (Å) 15.1458(11) 15.0869(12) 15.0368(13) 13.8862(11)
c (Å) 14.3526(10) 14.3477(11) 14.3392(12) 8.7857(7)
b (°) 101.954(1) 102.482(1) 102.857(1) 112.267(1)
V (Å3) 2000.2(3) 1996.2(3) 1991.5(3) 1250.21(17)
Z 4 4 4 4
q (g/cm3) 1.981 2.005 2.016 2.487
l (mm 1) 4.259 4.748 5.020 6.399
F(0 0 0) 1172 1180 1184 896
Crystal size (mm) 0.20 0.14 0.06 0.20 0.04 0.02 0.12 0.08 0.06 0.20 0.06 0.02
h (°) 1.98–28.43 1.98–28.35 1.99–28.37 1.99–28.47
Index ranges 12 6 h 6 12, 12 6 h 6 12, 12 6 h 6 12, 14 6 h 6 14,
19 6 k 6 20, 19 6 k 6 19, 19 6 k 6 19, 17 6 k 6 18,
19 6 l 6 19 18 6 l 6 18 18 6 l 6 19 11 6 l 6 11
Minimum and maximum transmission 0.4830 and 0.7842 0.4502 and 0.9110 0.5841 and 0.7527 0.3610 and 0.8827
Goodness-of-fit (GOF) on F2 1.153 1.206 1.482 1.295
R1, R2 [I > 2r(I)] 0.0204, 0.0429 0.0244, 0.0608 0.0182, 0.0537 0.0140, 0.0341
R1, R2 (all data) 0.0265, 0.0450 0.0331, 0.0642 0.0213, 0.0551 0.0155, 0.0350
3
Largest difference in peak and hole (e Å ) 0.592, 0.608 1.173, 0.854 0.855, 0.725 0.635, 0.648
Fig. 6. Thermal ellipsoids (50% probability) of [HoL(NO3)2(H2O)3] (8). The hydrogen atoms and the lattice water molecules have been removed for clarity.
7) and [HoL(NO3)2(H2O)3] (8). Complexes 1–7 were prepared using (b) H.V.R. Dias, K.H. Batdorf, M. Fianchini, H.V.K. Diyabalanage, S. Carnahan, R.
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