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Ejercicio 2 Nivel Avanzado
Ejercicio 2 Nivel Avanzado
ESTADISTICAS DESCRIPTIVAS
1. describeBy(PF, group = interaction(Tem,Trt))
Descriptive statistics by group
group: T25c.10h
vars n mean sd median trimmed mad min max range skew kurtosis se
X1 1 3 22 0.24 21.9 22 0.1 21.83 22.28 0.45 0.35 -2.33 0.14
------------------------------------------------------------------------------------------
group: T30c.10h
vars n mean sd median trimmed mad min max range skew kurtosis se
X1 1 3 21.38 0.75 21.57 21.38 0.67 20.55 22.02 1.47 -0.24 -2.33 0.43
group: Tamb..10h
vars n mean sd median trimmed mad min max range skew kurtosis se
X1 1 3 22.67 0.5 22.6 22.67 0.59 22.2 23.2 1 0.13 -2.33 0.29
------------------------------------------------------------------------------------------
group: T25c.11h
vars n mean sd median trimmed mad min max range skew kurtosis se
X1 1 3 21.44 0.52 21.34 21.44 0.53 20.98 22.01 1.03 0.19 -2.33 0.3
group: T30c.11h
vars n mean sd median trimmed mad min max range skew kurtosis se
X1 1 3 21.06 1.53 21.63 21.06 0.89 19.33 22.23 2.9 -0.32 -2.33 0.88
------------------------------------------------------------------------------------------
group: Tamb..11h
vars n mean sd median trimmed mad min max range skew kurtosis se
X1 1 3 21.68 0.1 21.65 21.68 0.07 21.6 21.8 0.2 0.29 -2.33 0.06
------------------------------------------------------------------------------------------
group: T25c.12h
vars n mean sd median trimmed mad min max range skew kurtosis se
X1 1 3 21.25 0.05 21.26 21.25 0.06 21.2 21.3 0.1 -0.13 -2.33 0.03
group: T30c.12h
vars n mean sd median trimmed mad min max range skew kurtosis se
X1 1 3 21.76 0.73 21.39 21.76 0.13 21.3 22.6 1.3 0.38 -2.33 0.42
------------------------------------------------------------------------------------------
group: Tamb..12h
vars n mean sd median trimmed mad min max range skew kurtosis se
X1 1 3 22.07 0.38 21.9 22.07 0.15 21.8 22.5 0.7 0.35 -2.33 0.22
------------------------------------------------------------------------------------------
group: T25c.13h
vars n mean sd median trimmed mad min max range skew kurtosis se
X1 1 3 21.81 0.95 21.53 21.81 0.73 21.04 22.87 1.83 0.27 -2.33 0.55
------------------------------------------------------------------------------------------
Gráficos box plots
PF groups
8h 22.17333 a
16h 22.10111 ab
9h 22.08889 ab
10h 22.01667 ab
15h 21.92222 abc
4h 21.88444 abc
18h 21.85667 abc
13h 21.84556 abc
5h 21.83556 abc
21h 21.80556 abcd
23h 21.75667 abcd
12h 21.69444 abcd
3h 21.67778 abcd
1h 21.65667 abcd
22h 21.62667 abcd
2h 21.60222 abcd
17h 21.56333 abcd
7h 21.43333 abcde
11h 21.39667 abcde
20h 21.27111 abcde
6h 21.14778 bcde
14h 20.92556 cde
19h 20.78778 de
24h 20.52111 e
Estadísticos descriptivos
> describeBy(PT, group = interaction(Tem,Trt))
shapiro.test(residuals(Facdca_m))
Shapiro-Wilk normality test
data: residuals(Facdca_m)
W = 0.98753, p-value = 0.05595
bartlett.test(PF~interaction(Trt,Tem))
Bartlett test of homogeneity of variances
data: PF by interaction(Trt, Tem)
Bartlett's K-squared = 95.063, df = 71, p-value = 0.02989
anova(Facdca_m)
Analysis of Variance Table
Response: PT
Df Sum Sq Mean Sq F value Pr(>F)
Tem 2 120.2 60.10 15.9694 5.446e-07 ***
Trt 23 10176.3 442.45 117.5725 < 2.2e-16 ***
Tem:Trt 46 853.9 18.56 4.9327 1.022e-13 ***
Residuals 144 541.9 3.76
---
Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’
cv.model(Facdca_m)
[1] 3.78417
shapiro.test(residuals(Facdca_m))
Shapiro-Wilk normality test
data: residuals(Facdca_m)
W = 0.97809, p-value = 0.001921
bartlett.test(pH~interaction(Trt,Tem))
Bartlett test of homogeneity of variances
data: pH by interaction(Trt, Tem)
Bartlett's K-squared = Inf, df = 71, p-value < 2.2e-16
anova(Facdca_m)
Analysis of Variance Table
Response: pH
Df Sum Sq Mean Sq F value Pr(>F)
Tem 2 13.887 6.9434 1416.761 < 2.2e-16 ***
Trt 23 60.466 2.6289 536.419 < 2.2e-16 ***
Tem:Trt 46 15.445 0.3358 68.511 < 2.2e-16 ***
Residuals 144 0.706 0.0049
---
Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
cv.model(Facdca_m)
[1] 1.197149
pH groups
T25c.1h 6.800000 a
Tamb..1h 6.743333 ab
T30c.1h 6.523333 bc
T30c.2h 6.473333 cd
T25c.10h 6.466667 cd
T25c.2h 6.433333 cde
T30c.6h 6.406667 cdef
T25c.11h 6.400000 cdefg
T25c.12h 6.400000 cdefg
Tamb..2h 6.383333 cdefgh
T30c.3h 6.380000 cdefgh
T25c.3h 6.366667 cdefghi
T30c.8h 6.350000 cdefghij
T25c.8h 6.333333 cdefghijk
T30c.9h 6.316667 cdefghijkl
Ph groups
T30c.7h 6.280000 cdefghijklm
T30c.4h 6.270000 cdefghijklm
T25c.13h 6.266667 cdefghijklmn
T25c.5h 6.266667 cdefghijklmn
T25c.6h 6.266667 cdefghijklmn
T25c.15h 6.233333 defghijklmno
T30c.10h 6.210000 defghijklmnop
Tamb..3h 6.196667 efghijklmnop
Tamb..9h 6.186667 efghijklmnopq
Tamb..8h 6.183333 efghijklmnopq
T25c.14h 6.166667 efghijklmnopq
T25c.9h 6.166667 efghijklmnopq
T30c.11h 6.166667 efghijklmnopq
Tamb..7h 6.153333 fghijklmnopq
Tamb..10h 6.150000 fghijklmnopq
T25c.16h 6.133333 ghijklmnopqr
T25c.4h 6.133333 ghijklmnopqr
Tamb..4h 6.130000 hijklmnopqr
Tamb..6h 6.126667 hijklmnopqr
T25c.7h 6.100000 ijklmnopqr
T30c.12h 6.090000 jklmnopqr
Tamb..14h 6.090000 jklmnopqr
T25c.19h 6.066667 klmnopqr
T30c.5h 6.053333 lmnopqr
Tamb..5h 6.053333 lmnopqr
T25c.17h 6.033333 mnopqr
T25c.18h 6.033333 mnopqr
T25c.20h 6.033333 mnopqr
T30c.15h 6.033333 mnopqr
Tamb..15h 6.016667 mnopqr
T25c.21h 6.000000 nopqr
T30c.14h 6.000000 nopqr
T25c.22h 5.966667 opqr
T25c.23h 5.966667 opqr
T30c.13h 5.963333 pqr
Tamb..12h 5.953333 pqr
Tamb..11h 5.946667 pqr
Tamb..13h 5.920000 qr
T25c.24h 5.866667 r
T30c.16h 5.213333 s
T30c.17h 5.176667 st
T30c.18h 5.176667 st
Tamb..18h 5.090000 stu
Tamb..17h 5.030000 stu
T30c.19h 5.023333 stu
Tamb..20h 4.993333 stu
Tamb..19h 4.953333 stu
Tamb..16h 4.913333 tu
T30c.20h 4.863333 u
Tamb..22h 4.576667 v
T30c.23h 4.496667 v
Tamb..24h 4.493333 v
Tamb..23h 4.490000 v
T30c.24h 4.486667 v
T30c.22h 4.473333 v
Tamb..21h 4.473333 v
T30c.21h 4.466667 v
ESTADISTICOS DESCRIPTIVOS
describeBy(CE, group = interaction(Tem,Trt))
3. shapiro.test(residuals(Facdca_m))
data: residuals(Facdca_m)
W = 0.95693, p-value = 4.253e-06
4. bartlett.test(CE~interaction(Trt,Tem))
Bartlett test of homogeneity of variances
data: CE by interaction(Trt, Tem)
Bartlett's K-squared = 193.42, df = 71, p-value = 2.793e-13
5. anova(Facdca_m)
Analysis of Variance Table
Response: CE
Df Sum Sq Mean Sq F value Pr(>F)
Tem 2 8.659 4.3294 70.0333 < 2.2e-16 ***
Trt 23 182.024 7.9141 128.0209 < 2.2e-16 ***
Tem:Trt 46 13.879 0.3017 4.8808 1.49e-13 ***
Residuals 144 8.902 0.0618
---
Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
6. cv.model(Facdca_m)
[1] 15.60681
CE groups
23h:Tamb. 3.42366667 a
22h:Tamb. 3.29866667 ab
23h:T30c 3.29600000 ab
24h:Tamb. 3.25866667 abc
21h:T30c 3.23733333 abc
22h:T30c 3.23210000 abc
24h:T30c 3.11266667 abcd
21h:Tamb. 3.04300000 abcd
20h:T30c 2.95400000 abcde
20h:Tamb. 2.92266667 abcde
18h:Tamb. 2.90766667 abcde
19h:Tamb. 2.88466667 bcdef
19h:T30c 2.76100000 cdef
18h:T30c 2.62866667 defg
17h:Tamb. 2.62466667 defg
23h:T25c 2.42566667 efgh
17h:T30c 2.37400000 fghi
16h:Tamb. 2.20066667 ghij
21h:T25c 2.12700000 ghijk
16h:T30c 2.11400000 ghijkl
24h:T25c 2.08700000 hijkl
15h:T25c 2.02333333 hijkl
15h:Tamb. 2.01900000 hijkl
22h:T25c 1.99800000 hijklm
12h:Tamb. 1.97433333 hijklm
13h:Tamb. 1.97133333 hijklm
17h:T25c 1.89433333 ijklm
12h:T30c 1.89000000 ijklm
16h:T25c 1.87066667 ijklmn
20h:T25c 1.83633333 jklmno
18h:T25c 1.83233333 jklmno
14h:Tamb. 1.77233333 jklmnop
14h:T25c 1.76633333 jklmnop
11h:Tamb. 1.74933333 jklmnop
13h:T30c 1.74666667 jklmnop
10h:Tamb. 1.62766667 klmnopq
19h:T25c 1.59500000 lmnopqr
11h:T30c 1.48200000 mnopqrs
13h:T25c 1.48166667 mnopqrs 7h:T30c 0.68420000 vwxyzAB
10h:T25c 1.35566667 nopqrst 5h:T30c 0.61773333 wxyzABC
10h:T30c 1.33066667 opqrst 6h:T30c 0.52203333 xyzABCD
12h:T25c 1.32066667 opqrstu 5h:Tamb. 0.51150000 xyzABCD
11h:T25c 1.26166667 pqrstu 5h:T25c 0.44090000 yzABCD
8h:Tamb. 1.24866667 pqrstu 4h:T30c 0.39733333 zABCD
15h:T30c 1.21633333 qrstu 3h:Tamb. 0.34180000 zABCD
9h:Tamb. 1.19733333 qrstuv 4h:Tamb. 0.32926667 zABCD
8h:T25c 1.10500000 qrstuvw 3h:T30c 0.30233333 ABCD
9h:T30c 1.07133333 rstuvw 4h:T25c 0.28833333 ABCD
14h:T30c 1.05683333 stuvw 2h:Tamb. 0.26260000 ABCD
7h:T25c 1.01910000 stuvwx 2h:T30c 0.23540000 BCD
8h:T30c 1.00243333 stuvwx 3h:T25c 0.18773333 BCD
7h:Tamb. 0.98326667 stuvwx 2h:T25c 0.13573333 CD
9h:T25c 0.94690000 tuvwxy 1h:Tamb. 0.08916667 CD
6h:Tamb. 0.85003333 tuvwxyz 1h:T25c 0.08580000 D
6h:T25c 0.79183333 uvwxyzA 1h:T30c 0.07000000 D
e). Variable Contenido relativo de agua
10. bartlett.test(CRA~interaction(Trt,Tem))
11. anova(Facdca_m)
Analysis of Variance Table
Response: CRA
Df Sum Sq Mean Sq F value Pr(>F)
Tem 2 142.3 71.13 42.804 2.576e-15 ***
Trt 23 15201.1 660.92 397.735 < 2.2e-16 ***
Tem:Trt 46 789.1 17.15 10.323 < 2.2e-16 ***
Residuals 144 239.3 1.66
---
Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
12. cv.model(Facdca_m)
[1] 2.274839
13. lsd1 <- LSD.test(Facdca_m,c("Trt","Tem"), alpha = 0.001, group = T,
+ console = T)
CRA groups
7h:T30c 63.54460 a 18h:T30c 61.07287 abcde
24h:T25c 63.52333 a 11h:T30c 61.03043 abcdef
19h:T30c 62.02583 ab 15h:Tamb. 61.00280 abcdef
20h:T30c 61.95163 ab 12h:T30c 60.99523 abcdefg
17h:Tamb. 61.55160 abc 13h:T25c 60.99333 abcdefg
16h:T25c 61.39333 abc 16h:Tamb. 60.91153 abcdefg
19h:Tamb. 61.37067 abc 11h:Tamb. 60.90907 abcdefg
23h:T25c 61.26333 abcd 18h:T25c 60.89667 abcdefg
12h:Tamb. 61.12250 abcde 14h:Tamb. 60.85940 abcdefg
13h:Tamb. 61.10530 abcde 17h:T25c 60.80333 abcdefg
14h:T25c 61.10000 abcde 9h:T30c 60.68363 abcdefg
19h:T25c 60.61333 abcdefg 7h:Tamb. 59.40890 bcdefg
13h:T30c 60.57337 abcdefg 8h:T25c 59.30667 bcdefg
21h:Tamb. 60.57283 abcdefg 5h:T30c 59.25937 bcdefg
14h:T30c 60.51900 abcdefg 10h:T30c 58.94380 bcdefg
15h:T25c 60.51667 abcdefg 23h:T30c 58.85863 bcdefgh
20h:T25c 60.48333 abcdefg 22h:T30c 58.15160 cdefgh
22h:Tamb. 60.45487 abcdefg 4h:T30c 57.80993 defghi
22h:T25c 60.30333 abcdefg 7h:T25c 57.67667 efghi
23h:Tamb. 60.25937 abcdefg 6h:Tamb. 57.52280 fghi
18h:Tamb. 60.25737 abcdefg 24h:T30c 57.47867 ghi
16h:T30c 60.22757 abcdefg 5h:Tamb. 55.35047 hij
24h:Tamb. 60.22610 abcdefg 6h:T30c 54.52190 ij
17h:T30c 60.17027 abcdefg 6h:T25c 53.58333 j
21h:T30c 60.07737 abcdefg 4h:Tamb. 52.67647 jk
20h:Tamb. 60.07177 abcdefg 3h:Tamb. 49.40940 kl
21h:T25c 60.05667 abcdefg 3h:T30c 48.88937 lm
9h:Tamb. 60.02497 abcdefg 4h:T25c 48.36333 lm
15h:T30c 59.94790 bcdefg 5h:T25c 45.86000 m
12h:T25c 59.93333 bcdefg 2h:Tamb. 41.21010 n
11h:T25c 59.92000 bcdefg 3h:T25c 40.58000 n
8h:T30c 59.87930 bcdefg 2h:T30c 40.35743 n
10h:T25c 59.86667 bcdefg 2h:T25c 33.64667 o
8h:Tamb. 59.77447 bcdefg 1h:Tamb. 29.53070 p
9h:T25c 59.65667 bcdefg 1h:T30c 25.31443 q
10h:Tamb. 59.61793 bcdefg 1h:T25c 22.16333 q
f). VARIABLE TASA DE IMBIBICIÒN
Estadisticos descriptivos
data: residuals(Facdca_m)
W = 0.85953, p-value = 3.425e-13
18. WlphaWtt.test(IMB~interaction(Trt,Tem))
19. anova(Facdca_m)
Analysis of Variance Table
Response: IMB
Df Sum Sq Mean Sq F value Pr(>F)
Tem 2 1774 886.8 18.4251 7.501e-08 ***
Trt 23 218485 9499.3 197.3587 < 2.2e-16 ***
Tem:Trt 46 16403 356.6 7.4083 < 2.2e-16 ***
Residuals 144 6931 48.1
Signif. Codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
20. cv.model(Facdca_m)
[1] 5.049336
IMB groups
7h:T30c 174.69587 a
24h:T25c 174.37333 ab
19h:T30c 163.37047 abc
20h:T30c 162.94053 abc
17h:Tamb. 160.08897 abcd
16h:T25c 159.04667 abcde
19h:Tamb. 158.89130 abcde
23h:T25c 158.47000 abcde
12h:Tamb. 157.22833 abcde
14h:T25c 157.22333 abcde
13h:Tamb. 157.11677 abcde 11h:T25c 149.51667 cdefghi
18h:T30c 156.89970 abcde 8h:T30c 149.39210 cdefghi
11h:T30c 156.61140 abcde 10h:T25c 149.18667 cdefghi
13h:T25c 156.50667 abcde 8h:Tamb. 148.60787 cdefghi
15h:Tamb. 156.44417 abcde 9h:T25c 147.90667 cdefghi
12h:T30c 156.38063 abcde 10h:Tamb. 147.64457 cdefghi
11h:Tamb. 155.83980 abcdef 5h:T30c 146.43590 cdefghi
16h:Tamb. 155.83960 abcdef 7h:Tamb. 146.36333 cdefghi
18h:T25c 155.79000 abcdef 8h:T25c 145.77667 cdefghi
14h:Tamb. 155.50813 bcdef 23h:T30c 143.74113 defghi
17h:T25c 155.13000 cdefg 10h:T30c 143.64753 defghi
9h:T30c 154.40160 cdefgh 22h:T30c 140.45500 efghij
19h:T25c 153.96333 cdefghi 4h:T30c 137.05720 fghijk
13h:T30c 153.65207 cdefghi 7h:T25c 136.32333 ghijk
21h:Tamb. 153.64990 cdefghi 24h:T30c 135.60243 hijkl
14h:T30c 153.32237 cdefghi 6h:Tamb. 135.45417 ijkl
15h:T25c 153.26333 cdefghi 5h:Tamb. 124.02960 jklm
20h:T25c 153.10000 cdefghi 6h:T30c 121.45980 klm
22h:Tamb. 152.88240 cdefghi 6h:T25c 116.68333 lm
22h:T25c 151.94000 cdefghi 4h:Tamb. 111.32463 mn
23h:Tamb. 151.63653 cdefghi 3h:Tamb. 97.67103 no
18h:Tamb. 151.62673 cdefghi 3h:T30c 95.65900 no
16h:T30c 151.50407 cdefghi 4h:T25c 93.86667 no
24h:Tamb. 151.45243 cdefghi 5h:T25c 84.75000 op
17h:T30c 151.08293 cdefghi 2h:Tamb. 70.09900 p
20h:Tamb. 150.52583 cdefghi 3h:T25c 68.29667 pq
21h:T30c 150.50200 cdefghi 2h:T30c 67.66800 pq
21h:T25c 150.38000 cdefghi 2h:T25c 50.81667 qr
9h:Tamb. 150.16677 cdefghi 1h:Tamb. 41.90720 rs
15h:T30c 149.91547 cdefghi 1h:T30c 33.91100 rs
12h:T25c 149.60667 cdefghi 1h:T25c 28.52333 s
ANALISIS DE COMPONENTES PRINCIPALES (ACP)
> res.pca <- PCA(Semi.pca, scale.unit = TRUE, ncp = 6, graph = T)
> eigen <- get_eig(res.pca)
> eigen
eigenvalue variance.percent cumulative.variance.percent
Dim.1 3.7405841705 62.34306951 62.34307
Dim.2 1.1564206312 19.27367719 81.61675
Dim.3 0.9672061686 16.12010281 97.73685
Dim.4 0.1173274891 1.95545815 99.69231
Dim.5 0.0178570617 0.29761769 99.98993
Dim.6 0.0006044788 0.01007465 100.00000
corrplot(res.pca$var$cos2, is.corr = F)
> fviz_cos2(res.pca, choice = 'var', axes = 1:2)