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Clathrates - An Exploration of The Chemistry of Caged Compounds
Clathrates - An Exploration of The Chemistry of Caged Compounds
Introduction
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GENERAL I ARTICLE
very weak forces like hydrogen bonding, ion pairing, dipole- The cage is held
dipole interaction and van der Waals attraction. Analysis indi- together by very
cates that the composition of clathrates is slightly less than the weak forces like
expected stoichiometric ratio of the host to guest molecules. hydrogen bonding,
This suggests that all the available cavities may not be used. The ion pairing, dipole-
reason for this can be understood from the enclosing process. A dipole interaction
guest molecule must be properly oriented at the moment of and van der Waals
enclosure; if not, it will be excluded and some unfilled holes are attraction.
to be expected.
Background
Classification
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GENERAL I ARTICLE
Fullerenes
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2
GENERAL I ARTICLE
(a) (b)
Fullerenes are found deep inside the earth close to the core and
also at meteoritic impact locations, where high temperature and
pressure conditions exist.
The ability of fullerenes to en cage one or more metallic atoms The ability of
inside the cage helps as contrast-enhancing agents for Magnetic fullerenes to encage
Resonance Imaging (MRI). Contrast agents enhance the quality one or more metallic
of MRI images, aiding in the detection and diagnosis of injuries atoms inside the
or abnormal growth in the human body. Gadolinium(III) che- cage helps as
lates serve as the leading commercial MRI contrast agents. contrast-en hanci ng
When Gd 3 + locked up in organic chelates is injected into the agents for Magnetic
body it can magnetically tickle water protons present in tissues Resonance Imaging
leading to higher signal intensity and greater contrast in the (MRI).
_ _ _ _ _ _ _ _.AAAAA.~_ _- -_ _
RESONANCE I July 2004 v V VVV v 21
GENERAL I ARTICLE
Gas Hydrates
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GENERAL I ARTICLE
b'
'-./ (
~r ..
.. A(c::::>< •
8 e ..
~
+ Gas @
~r@
are potential source of future energy requirement as they store a Figure 3. Mechanism for
large quantity of natural gas. kinetics of gas hydrate.
Credit: E Dendy Sloan
India is collaborating with Russia for exploration of gas hydrates
in Indian ocean area. Gas hydrates are metastable. Destabilised
gas hydrates beneath the seafloor can enhance global warming
and cause climatic changes. The decomposition and blowout of
gas from gas hydrates explain the mystery of the Bermuda
triangle, located in the Atlantic ocean to the east coast of USA.
Clathrin
tions between proximal and distal legs that hold the lattice bound transport
together. This cage structure is similar to the host in clathrate package, and is a
compounds. Lipids and proteins (cargo) are engulfed into this clathrate like host-
clathrin-coated vesicle as illustrated in Figure 4c. The c1athrin guest system.
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GENERAL I ARTICLE
linker (c)
terminal
(a) """\ domaIn
~}: :/<;~~W1iJj/#liJ/lf!!#j}!~::: ::,{:!}:,{{fJ
distal
leg
{ (:)// ::~:;:~~}~::}/{/(;##"{if#I\:";/::)H;;:;:?{:
- - - - heavy chaIn
~}
,
light chain
• Proteins deform
•
..1&76 membrane
I:
.i
.,:
- 105 leD. Proteins surround
membrane
extrusion
~~
Coated vesicle
pinches off
Figure 4. Clathrin structure (a) Triskelion with three bent legs. (b) Triskelions self-
assemble forming cages. (c) Endocytic pathway using clathrin coated vesicle. (d) Polyhe-
drallattice on c1athrin surface (e) Cross-section of clathrin coated vesicle.
Figures a,b: Reprinted, with permission, from the Annual Review of Biochemistry, Vol.69 (c) 2000
by Annual Reviews, www.annualreviews.org.
Figures c,d,e: Reprinted with permission from Oxford University Press.
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GENERAL I ARTICLE
Inorganic Clathrates
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GENERAL I ARTICLE
The cavity size of Si Na gSi46, Nax Si 136 (X= 1-24) etc. are formed. Rb+ and Cs+ are too
and Ge are large to be incorporated into the cages of Si and Ge. Sn, however,
comparable only with forms clathrates with Rb + and Cs +yielding solids like RbzCS6 Sn46,
those of Na+ of K+ and Cs gSn46, K1.6CS6.4Sn44 and others. Figure 5 shows the inorganic
compounds like clathrate structure. Inorganic clathrates can be synthesized by
Ka Ge46I NaaSi 461 carrying out reactions at 650°C and 10-5 mm Hg pressure over a
NaxSi 136 (X=1-24) etc. period of three weeks to ensure better diffusion of the alkali
are formed. Rb+ and metals into Si and Ge.
Cs+ are too large to be
There are results to support the idea that strong charge-transfer
incorporated into the
interactions exist between Si/Ge and the alkali metal atoms,
cages of Si and Ge.
although the resulting structure cannot be considered entirely
ionic. The NaxSi 136(x<9) system is speculated to encapsulate
neutral alkali metal atoms rather than Na+ ions, i.e., there is no
electron transfer over the Si or Ge network but isolated free
alkali metal atoms in the cage. At higher Na concentrations
insulator-to-metal transition occurs as Na electrons are delocal-
ized (full occupation of all sites NaZ4Si136) due to significant
overlap between the Na and Si orbitals.
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GENERAL I ARTICLE
Zeolites
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GENERAL I ARTICLE
Even though the guest The inclusion properties of zeolites have found wide industrial
and host molecules applications. Hazardous and toxic fluids found in nature can be
are different in gas absorbed, trapped or neutralized by zeolite. For example they
hydrates and are used for separation and storage of nuclear waste. They can
inorganic clathrates, also be used as water softener by exchange of their metal cations.
they belong to
Types of Clathrate Structures
clathrate-I type
because of their Inorganic clathrates and hydrates are classified into two catego-
similar structure and ries depending on their structure and number of host-guest
same number of host- molecules. They are referred to as clathrates of type-I and II, and
guest molecules their characteristics are described below.
occupying the lattice.
Clathrates with 46 host and 8 guest atoms are known as type-I
clathrates. They are represented by the general formula as GSB46.
there are eight cages per formula unit, two small and six large
and therefore written as G' 2G" 6B' 46' where G' and G" are differ-
ent guest molecules; B represents host atoms / molecules and is
termed as clathrand. When B is water molecule, type-I clathrates
are termed as gas hydrates; the guest (G) can be Ar, Kr, Xe, HzS,
Cl z' CH4 gases and the host (B) is water molecule.
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GENERAL I ARTICLE
~w
ing units of clathrate type-I
structure; (b) Clathrate
a
type-I layer; (c) Polyhedral
representation of clathrate-
I unit cell.
Type-II structure:(a) Build-
ing units of clathrate type-II
structure; (b) Clathrate
c type-II layer; (c) Polyhedral
b
representation of cia thra te-
II unit cell.
Type-ll Reprinted with permission
[5
12
]
[5 126 4 ] from Elsevier [3].
(~\..~
\jJJ;
a~
b c
Clathrates with 136 clathrands and 24 guests are referred to as Type-I gas
type-II clathrates. They are represented as Gz4 B 136 or G16 G' gB136 hydrates are
where G is the guest atom and B is the clathrand. In type-II generally formed in
clathrates, G can be HzS, COz' CHC1 3, n-propane, nitro methane deep oceans from
or cylopentane. When B is a water molecule, they are termed as biogenic gases .
--------~--------
RESONANCE I July 2004 29
GENERAL I ARTICLE
Applications
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GENERAL I ARTICLE
Future prospects:
Suggested Reading
Address for Correspondence
[I] http://eed.llnl.gov/gas_hydrates/what.html Srivathsa Vaidya
[1] http://woodshole.er.usgs.gov/ 64400 Freret Street
[2] http://www .hms.harvard.edu/news/c1athrin Department of Chemistry
[3] http://www.bza.org/zeolites.html Tulane University
[4] Annual Review o/Earth and Planetary Sciences,Vol.28, pp.477-507, May New Orleans, LA 70118
2000. USA
[5] Bobev and Sevov, Journal of Solid State Chemistry,Vo1.l53, No 1,2000, Email: srUit@rediftmail.com
pp.92-105. svaidya@tulane.edu
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