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Plant Mol Biol Rep (2012) 30:235–241

DOI 10.1007/s11105-011-0318-1

Functional Analysis of the Promoter of a Female-Specific


Cucumber CsACS1G Gene
Tao Wu & Zhiwei Qin & Zhuo Feng & Xiuyan Zhou &
Ming Xin & Yalin Du

Published online: 24 May 2011


# Springer-Verlag 2011

Abstract The 5′ fragment (1,678 bp) of the cucumber CaMV Cauliflower mosaic virus
female-specific CsACS1G gene was transcriptionally fused GA Gibberellic acid
to the green fluorescent protein (GFP) gene and GUS gene GFP Green fluorescent protein
and functionally analyzed for important regulatory regions NSHB Non-symbiotic hemoglobin-2
controlling gene expression in onion epidermal cells or
stably transformed Arabidopsis plants. Progressive up-
stream deletion analyses of the promoter showed that the
cis-elements needed for cucumber female-specific expres- Introduction
sion might be located in the region from −535 to −402 bp.
Furthermore, deletion analysis also revealed that the region Cucumber is a monoecious plant that serves as a model for the
from −117 to −1 bp is sufficient to induce transcription of study of floral sex determination (Malepszy and Niemirowicz-
CsACS1/1G. In addition, there might be repressor elements of Szczytt 1991). At the early stages of development, the
cucumber female-specific expression in the region upstream cucumber floral primordia are initially bisexual, containing
of −535 bp. These findings indicate that a 1,678 bp fragment primodia of both anthers and pistils, and sex determination
of the cucumber female-specific CsACS1G promoter contains occurs following the selective arrest of the development of
specific transcription regulatory elements and provide clues either the staminate or the pistillate primodia (Bai et al.
about the roles of CsACS1G in cucumber sex determination. 2004). Gynoecy in cucumber is controlled by the Female (F)
Further analyses of these elements will help to elucidate the locus that can be modified by other sex-determining genes,
molecular mechanisms regulating the expression of the environmental conditions, and plant hormones (Pierce and
CsACS1G gene during sex determination in cucumber. Wehner 1990; Jin et al. 2011). Most of the molecular studies
in cucumber have targeted the role of ethylene in sex
Keywords CsACS1G . Cucumber . Promoter . determination, the genes involved in ethylene biosynthesis
Sex determination and perception, as well as some ethylene-induced genes,
have been found to be involved in sex determination
Abbreviations (Yamasaki et al. 2000; Ando and Sakai 2002; Saito et al.
ACC 1-Aminocyclopropane-1-carboxylate 2007), specifically the role of the key regulatory enzyme of
ACS ACC synthase ethylene biosynthesis, 1-aminocyclopropane-1-carboxylate
ARR1 Nuclear response regulator 1 (ACC) synthase (ACS) (Trebitsh et al. 1997; Mibus and
AuxRE Auxin responsive elements Tatlioglu 2004; Knopf and Trebitsh 2006; Saito et al. 2007;
Shiber et al. 2008; Boualem et al. 2009; Li et al. 2009).
Monoecious (ff) cucumber possesses a single CsACS1 gene,
T. Wu : Z. Qin (*) : Z. Feng : X. Zhou : M. Xin : Y. Du while gynoecious (FF) plants possess an additional female-
Horticultural Department, Northeast Agricultural University,
specific copy, denoted as CsACS1G, which is mapped to the
59 Mucai Road,
Harbin 150030, China cucumber F locus. A perfect correlation (100%) was found
e-mail: qzw303@126.com between female phenotypes possessing at least one dominant
236 Plant Mol Biol Rep (2012) 30:235–241

F allele and the presence of CsACS1G (Trebitsh et al. 1997). can potentially confer the responsiveness of CsACS1G to
Shiber et al. (2008) revealed that CsACS1G is indeed the F developmental and hormonal factors and thereby control
locus and that one of its activities is to repress stamen female sex determination in cucumber. It is also noteworthy
development in gynoecious floral buds. Expression analyses that the distal promoter of CsACS1G contains a CArG
indicated CsACS1G is expressed in stamen primordia of domain that can bind MADS-domain transcription factors. In
gynoecious floral buds and that its expression is induced by gynoecious plants, at the sex determination stage CsACS1G
auxin and repressed by gibberellic acid (GA). The cucumber is expressed in the stamen primordia. Thus, CsACS1G may
female-specific CsACS1G gene is the result of a relatively be regulated by a homeotic gene, such as CUM1, leading to
recent gene duplication and recombination, between CsACS1 repression of stamen primordia at the critical developmental
and a branched-chain amino acid transaminase gene. The stage (Kater et al. 2001; Bai et al. 2004). Although there are
CsACS1G and CsACS1 genes are identical duplicated genes some comparative computerized promoter analyses between
except for the distal promoter region that is unique to each the promoters of the duplicated genes as mentioned above,
gene. Transient expression assay revealed that the proximal there is no experimental evidence about this.
promoter (−402/−1) is sufficient to induce transcription of In order to address the above questions, in this study, we
CsACS1/1G (Shiber et al. 2008). Therefore, any differential have set out to dissect and analyze the promoter region of
expression between the duplicated genes is likely to originate CsACS1G to further understand the control of female-
from unique regulatory elements (induction or repression) specific transcription. We have used the microprojectile-
residing in the distal promoter of the duplicated genes. mediated transient expression assay in onion epidermal cell
Transgenic technology is an important tool for the and stably transformation in Arabidopsis plants. For the
improvement of agronomic traits in a wide variety of crop transient and stably expression assay, 5′ promoter deletions
species through the stable expression of foreign genes, and of CsACS1G were constructed in vitro and fused to the
this usually necessitates the use of promoters to drive coding region of the GFP and GUS gene. The ability of
transgene expression exclusively in targeted tissues (Coelho these truncated 5′ promoter regions to drive the expression
et al. 2010; Singer et al. 2010; Bhullar et al. 2011). Studying of the GFP and GUS gene was monitored after they were
differential patterns of promoter activity based on stable introduced into onion epidermal cell with the particle gun
transformation systems and transient expression assay of and stably transformed Arabidopsis plants. We have
reporter genes in bombarded plant tissue slices has served as localized essential control elements of the CsACS1G
efficient means of predicting the activity of a gene promoter promoter in a region between −535 and −402 bp. Results
(George and Parida 2010; Kato et al. 2010; Ramli and from the previous and current studies suggest that the
Abdullah 2010; Yang et al. 2011). Until recently, several sequence between −535 and −402 bp may be important for
putative cis-acting DNA elements have been identified in the the cucumber F gene activation.
upstream sequence and 5′ UTR of functional genes (Singer
et al. 2010; El-Shehawi et al. 2011; Saha et al. 2011).
In order to determine how the duplicated genes (CsACS1/ Materials and Methods
1 G) are regulated and thus how the sex determination of
cucumber is integrated, the promoter regions of the Plant Material and Growth Conditions
duplicated genes have been analyzed for the presence of
cis-regulatory sequences controlling transcription. Compara- A cucumber (Cucumis sativus L.) gynoecious cultivar
tive computerized promoter analysis between the promoters “D0420” was used in this study. Seeds were obtained from
of the duplicated genes suggested the presence of both the Northeast Agricultural University and were germinated
similar and unique putative cis-acting regulatory elements in and grown in plastic pots containing a mixture of peat and
the two promoters. The proximal promoter that is identical in vermiculite (1:1, v/v). Plants were grown in a growth chamber
both genes, as well as the distal promoter that is unique to under a 16/8 h photoperiod at 25°C (day) and 18°C (night).
each gene contains elements for repression of GA response.
On the other hand, auxin responsive elements (AuxRE) are PCR Cloning of the CsACS1G Promoter Region
present in the proximal promoter and in the distal promoter
of CsACS1G (Mibus and Tatlioglu 2004; Rimon Knopf and Total genomic DNA was extracted from leaf tissue as
Trebitsh 2006). The proximal promoter and the distal described by Chetelat et al. (1995). The CsACS1G promoter
promoter of CsACS1G contain AuxRE while GA response region was amplified with the forward (5′-TCATCCACTGC
and repression elements are present in the proximal and CACAAGTCGTT-3′) and reverse (5′-GATGCCGTTGG
distal promoters of both genes. Computer analysis of the GATTAGAAGTC-3′) primes, which were designed according
1 kb region upstream of the transcription initiation site to the sequence of ACS1G (GenBank accession No.
revealed several putative cis-acting regulatory elements that DQ839406). The PCR products were purified and cloned
Plant Mol Biol Rep (2012) 30:235–241 237

into pGEM-T Easy Vector (Promega, USA) followed by generated by PCR with three forward primers (P1: 5′-
sequencing. The sequence was then compared by the BLAST CGAAGCTTTCATTGATATGCAACTTAGC-3′; P2: 5′-
program. CGAAGCTT TATGTTTTCCCCTAACA-3′; P3: 5′-
CGAAGCTTATCAAACCATACCTGC-3′; the introduced
Construction of Vectors and Bombardment Hind III sites are underlined) and one reverse primer
(R1: 5′-CGCGGATCCTTGAGTTGGAGAGGTGTTC-3′,
With the cloned genomic region as a template, a 1,678- the introduced BamHI site is underlined). The amplified
bp fragment upstream of the transcription start site of fragments were, respectively, inserted into the pBI121 vector
CsACS1G gene and its 5′ deletion derivatives were as a Hind III–BamHI fragment at the corresponding
generated by PCR with eight forward primers (pF1: 5′- restriction sites in place of the CaMV 35S promoter region,
CGGAGCTCATCCTGGTAAGAGGTCATC-3′; pF2: 5′- resulting in three pBI-CsACS1G::GUS vectors. The three
CGGAGCTCTACAAATTCCCACCAGTTA-3′; pF3: 5′- expression vectors were named P′535 (−535/−1), P′402
CGGAGCTCATACTAGTTGCTAAATAGATCC-3′; pF4: (−402/−1), and P′311 (−311/−1), respectively. The three
5′-CGGAGCTCATATCTAGGCTGCCACTG-3′; pF5: 5′- constructs and pBI 121 vector were then transformed into A.
CGGAGCTCTCATTGATATGCAACTTAGC-3′; pF6: 5′- thaliana (Col-0) using the floral dip method (Bechtold et al.
CGGAGCTC TATGTTTTCCCCTAACA-3′; pF7: 5′- 1993). Transformed plants were selected on MS plates
CGGAGCTCATCAAACCATACCTGC-3′; pF8: 5′- supplemented with kanamycin containing 100 mg l−1 cefo-
CGGAGCTCTAACCAAATCCCAGACCC-3′; the intro- taxime in 4% (w/v) top agar. The T2 populations of A.
duced SacI sites are underlined) and one reverse primer thaliana were harvested and analyzed for quantification of
(pR1: 5′-CGCGGATCCTTGAGTTGGAGAGGTGTTC-3′, GUS activity. Plant tissues were ground into a fine powder
the introduced BamHI site is underlined). The amplified using liquid nitrogen with a mortar and pestle and suspended in
fragments were, respectively, inserted into the pGII vector GUS extraction buffer (50 mM sodium phosphate pH 7.0;
(Clontech, USA) as a SacI–BamHI fragment at the 0.1% Triton X-100; 10 mM 2-mercaptoethanol; 10 mM 1,2-
corresponding restriction sites in place of the cauliflower diaminocyclohexane-N,N,N,N-tetra-acetic acid; and 0.1%
mosaic virus (CaMV) 35S promoter region, resulting in a sodium lauryl sarcosine). The supernatant was collected after
series of pGII-CsACS1G::GFP vectors. The eight expression centrifugation at 12,000×g for 10 min at 4°C. Fluorometric
vectors were named P1047 (−1047/−1), P905 (−905/−1), quantification of GUS activity was performed using 4-
P773 (−773/−1), P631 (−631/−1), P535 (−535/−1), P402 methylumbelliferyl-β-D-glucuronide substrate (Jefferson et
(−402/−1), P311 (−311/−1), and P117 (−117/−1), respectively. al. 1987). The content of total proteins was determined using
Ligation reactions were carried out using T4 DNA ligase the Bradford method (Bradford 1976). The GUS activity is
(Promega, USA), and the inserts were verified by sequencing expressed as pmol of 4-methylumbelliferone per mg protein
analysis. The confirmed constructs were used to test per minute.
promoter activities in onion epidermal cells. Additionally, a
pGII vector with the GFP gene controlled by the CaMV 35S
promoter was used as a positive control. The final construct Results and Discussion
and the control were transiently expressed in onion epider-
mal cells using a particle gun-mediated system (PDS-1000/ A CsACS1G promoter region was isolated as described in
He; Bio-Rad). The bombarded cells were held in the dark at Materials and Methods, the resulting 1,678 bp fragment,
25°C for 24 h followed by GFP imaging using confocal upstream of the CsACS1G gene, was sequenced and
microscopy (Carl Zeiss; LSM 510 Meta) as described (Guo designated as pCsACS1G (Fig. 1). The GenBank BLAST
et al. 2003). Each experiment was repeated three times, on results showed that pCsACS1G has 99.05% nucleotide
different days, and with freshly prepared new batches of similarity to the promoter of CsACS1G (GenBank acces-
reagents and onion epidermal cells. Each independent sion No. DQ839406). A promoter motif search was carried
experiment consisted of three replicates of onion epidermal out to define putative cis-elements in the pCsACS1G
cells each. All repeated experiments gave consistent results. sequence using the software programs PLACE (http://www.
The reported data are means of the obtained results from a dna.affrc.go.jp/htdocs/PLACE/) and PlantCARE (http://bio
representative experiment. informatics.psb.ugent.be/webtools/plantcare/html/). A num-
ber of potential regulatory motifs corresponding to known
Stable Transformation of Arabidopsis thaliana Plants cis-elements of eukaryotic genes were found (Fig. 1). A
TATA box was found at the positions −44 to −35 bp
With the cloned genomic region as a template, the 535 bp upstream of the transcription start site, whereas a CAAT box
(−535/−1), 402 bp (−402/−1), and 311 bp (−311/−1) fragment was observed at positions −133 to −130 bp (Fig. 1); these
upstream of the transcription start site of CsACS1G gene were boxes function as basal promoter elements for transcription.
238 Plant Mol Biol Rep (2012) 30:235–241

Fig. 1 Nucleotide sequence of TCATCCACTGCCACAAGTCGTTCCTCGACCTGACACTCATTCAAATCAGTGCCCACTTC


the pCsACS1G promoter region.
The putative transcription start TCTCGTCTTTTTATCACAATCCATTATTTTACCAAGACAAACAAATAATATTCCTTACGC
site is designated as +1 and AGGTATTTAAACAACGTACAAAAGAGAGAACCAACTCAATCACATTTTCGACTTACAA
indicated by an arrow. The AACATTTGTAAATATGTTGAGATGAGATCAAATCTAAATATAGGAAATTAAATTTGAAAG
putative TATA box and CAAT
box are shown in bold. The TAGTTTTTTTTTAGTACACCCAAGTGAACACCACAATTAATCTCATAAGAGAAATTCTA
forward and reverse primers are AGATATAAAATCCTGGTAAGAGGTCATCTTGATTGAACTCATTCTCTTCAACTCTTTTAT
underlined. ABRE elements are
CAATCCTATAGATATTTAGAATTTGACCATTAGACCAACTCAAAATGGTTTATACCTTTA
underlined and shaded; GARE
and GARC elements are boxed AAAGTTGACAGTGTATAACAACTTTAATATTACAAATTCCCACCAGTTAATAGTATTTCTT
and shaded. Putative light TTAATACCGTCCAAAGCTAAATTGTCAGCAAGCATGCATTTTATTGACAACTAGACCAA
regulation-related elements are
in italics CCTAAGATGTTTCCTCTAAAAATATTTCAGAAATTATTATACAATACTAGTTGCTAAATA
GATCCATTTTACAAATAATACGAGTAAGCTTCACAAATGGTTTTTATTACATGCATTATAT
GGACATTTTAAGTGATCTAATAAGACAATTATTTGACCCTATTACGAAAAAGACAATGT
CAAAGATATCTAGGCTGCCACTGGAGCATGCCCTCACTGAACAAAATCAAACTGGCCTA
TTTTCCTTTCTTTTTTTGTTTTTCATTAAAATAATCACTCCTTCATTGATATGCAACTTAG
CAAAATATATAAGTACTAGATAAGAAAACCCAAATCAAGAGAAGCAACGACAAAAACA
CGGCGGGTTTAAGTATTTAACTACTTCGGACGGGCATAGTTATGAGCAACATTAATTATG
TTTTCCCCTAACAAATTAACCCCCAAATCATTAACATTTTTCATCATCCCATTCATTTTGT
TTCATAATCCCATTTCATCTTCCAATATCAAACCATAACCTGCCTCTGGTCGGAGGACA
CTTTCCATAAATAATTCCTCAAATCATCACTGTTTATCAACCCCCTTAATTAATTAATTAAT
ATCAAACACACTCTCTATATTATCTCTACAATCTAAATAATATACCTATATATATATATATTT
GTCTCTTATTTTAATTAGACCAATTAAATTAATCTATAACCAAATCCCAGACCCCACAT
GTGGTCAAAAGTTTTTGTTGTCACCATCTACGTGGCCTATGGATTTTGTCCTATAAATA
CCACCCTATGTTTGCTGAACACCTCTCCAACTCAAACATTCGAAGAACTATCTACCATA
TTCCAACCAATACAAACCACCTCTTTTCTCTCTCTCTATTTCTATTTCTCAACATTTCTCT
CAATCTCATAATCTTTTGTACCTATATACCTCACCTCAACGTTAATCTTAATCTTAAAATC
ATCAGATTCTTCTTCCATCCATCCCTTGGCTAGCTTATTAGCAGCACAACCGAAGAAAA
AATGAAGATGCTTTCCACAAAAGCCACGTGCAATTCCCACGGTCAAGATTCCTCCTACT
TCTTAGGATGGGAAGCTTATGAGAAGAACCCCTTTGATGAGACTTCTAATCCCAACGGC
ATC

Furthermore, regulatory elements with homology to those responsive promoters of primary/early genes (such as
identified in hormones or light-responsive (regulation) genes PS-IAA4/5, GH3, and SAUR15A), each of these promoters
were found in the pCsACS1G region such as ABREs, AuxRE, is rapidly and specifically activated in response to biologi-
GARE (GARC), and light-responsive (regulation) elements cally active auxins (Qi et al. 2002). The GARE and GARC
(Fig. 1). The ABREs, which sharing a (C/T)ACGTGGC were reported to be necessary and sufficient for GA
consensus sequence are found to be present in numerous responsiveness (Gubler and Jacobsen 1992). In addition, the
ABA and/or stress-regulated genes (Choi et al. 2000), while light-responsive (regulation) elements are associated with
the AuxRE have been identified functionally in natural auxin- light-responsive or light-induced promoter regions (Hudson

Fig. 2 Structure of GFP fusion CsACS1G promoter GFP


constructs
-1047 ~ -1
-905 ~ -1
-773 ~ -1
-631 ~ -1
-535 ~ -1
-402 ~ -1
-311 ~ -1
-117 ~ -1
Plant Mol Biol Rep (2012) 30:235–241 239

Fig. 3 Onion epidermal cells transiently transformed with different constructs. a P535; b P631; c P773; d P905; e P1047; f P311; g P402; h P117;
i pGII

and Quail 2003). Several putative elements including MYB epidermal cells containing P535 compared to other pro-
and WRKY are also present in the promoter region. The MYB moters, and P1047 was the lowest, while there were less
were reported to function as transcriptional activators in changes comparing the onion epidermal cells harboring P631,
abscisic acid signaling in Arabidopsis (Abe et al. 2003), P773, and P905 constructs. This suggests that there might be
while WRKY was reported to be a transcriptional repressor of repressor elements in the region upstream of −535 bp (Fig. 3).
the GA signaling pathway in rice (Zhang et al. 2004). Furthermore, GFP activities were higher in onion epidermal
Additionally, the promoter region also contains several cells containing P535 compared to P311, and GFP activities
potential motifs with homology to inducible regulatory of P535 was comparable to that of pGII vector containing
elements such as the W-box. The W-box was reported to be 35S promoter (Fig. 3).
involved in sugar stress response in barley (Sun et al. 2003). Due to the reason that GFP is an excellent qualitative
Taken together, sequence analysis of pCsACS1G promoter marker for promoter expression, it is not easily used in
region suggests that it contains a number of elements that are quantitative assays of heterologous expression. The experi-
potentially important in controlling gene expression and that ments that have been completed above are appropriate as
the CsACS1G gene may be subjected to complex regulations testing transient expression of genetic constructs in onion
including hormone and light induction.
In order to localize promoter regions important for the
transcriptional control of the CsACS1G gene, the full-length
promoter (P1678) and a series of its 5′-truncated fragments
(P1047, P905, P773, P631, P535, P402, P311, and P117)
were fused to the GFP reporter gene (Fig. 2). First, we
compared the GFP activities in onion epidermal cells
containing P402, P311, and P117, which are in the identical
proximal promoter region of CsACS1/1G. The results showed
that all the three promoters could induce transcription of
CsACS1/1G, and GFP activities were highest in onion
epidermal cells containing P311, followed by P402 and
P117 (Fig. 3). This suggests that P117 is sufficient to induce
transcription of CsACS1/1G. Also, there might be repressor
elements in the region between −402 and −311 bp and
enhancer elements in the region between −311 and −117 bp.
Then, GFP activities in onion epidermal cells containing
Fig. 4 GUS activity assay in transgenic A. thaliana plants (T2
P1047, P905, P773, P631, and P535, which are in the
generation). Mean values are expressed in pmol MU per mg protein
specific distal promoter region of CsACS1G were compared. per min with data from three independent lines. Error bars indicate SE
The results showed that GFP activities were highest in onion values
240 Plant Mol Biol Rep (2012) 30:235–241

epidermal cells prior to spending time and money on more repressor elements of cucumber female-specific expression
powerful experiments involving stable transformation of intact in the region upstream of −535 bp. The results of this study
plants makes good sense. To get a much more mature study provided a useful foundation to understand the biological
that examines expression of these genetic constructs in flower roles of this female-specific CsACS1G gene in cucumber
tissues of stably transformed transgenic plants, expression of floral development. To demonstrate the contribution of the
some important promoter constructs (P′535, P′402, and P′311) various identified elements in the promoter to female-
in flower tissues of stably transformed Arabidopsis plants had specific, further study by loss of function analysis is needed
then been done. The results showed that the GUS activity were including deletions analysis, linker scanning, and/or point
highest in flower tissues containing P′535, followed by P′311 mutations.
and P′402 (Fig. 4), which is consistent with the transient
expression results. Therefore, the elements needed for female- Acknowledgements We thank Dr Jian-yong Li (Shanghai Institute
of Plant Physiology and Ecology; Cornell University) and Dr Ai-hong
specific expression might be located in this 133 bp fragment
Zhang (Zhejiang University) for providing pGII and pBI121 vector,
(–535/−402). Further sequencing analysis found that there and their helping with Arabidopsis transformation experiments. This
was a nuclear response regulator 1 (ARR1) and an I-box in work was supported by Foundation for Technological Innovation
this region. ARR1 is a response regulator (N=G/A/C/T; Research Team in University of Heilongjiang Province of China
(2009td07), the Special Grade of the Financial Support from China
AGATT), which was found in the promoter of rice non- Postdoctoral Science Foundation (201003411); the Heilongjiang
symbiotic hemoglobin-2 (NSHB) gene (Ross et al. 2004); Postdoctoral Special Sustentation Fund (2009), the Special Fund for
Cytokinins are sensed by histidine protein kinase receptors Scientific and Technological Innovative Talents in Harbin
(CRE1, AHK2, and AHK3) that transmit signals via histidine (2011RFQXN044), and Scientific Research Foundation for Doctor,
Northeast Agricultural University (2009RC10).
phosphotransfer proteins to ARRs to activate or repress
transcription. Deletion and site-directed mutational analyses
of a predicted ARR1-binding cis-element in the OsNSHB2
promoter confirmed its functionality in cytokinin response.
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