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Biotech8 q3 Mod1 Toolsusedingeneticengineering v3
Biotech8 q3 Mod1 Toolsusedingeneticengineering v3
Biotech8 q3 Mod1 Toolsusedingeneticengineering v3
Biotechnology
Quarter 3 – Module 1:
Tools Used in Genetic
Engineering
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Biotechnology
Quarter 3 – Module 1:
Tools Used in Genetic
Engineering
Introductory Message
This Self-Learning Module (SLM) is prepared so that you, our dear learners,
can continue your studies and learn while at home. Activities, questions,
directions, exercises, and discussions are carefully stated for you to understand
each lesson.
Each SLM is composed of different parts. Each part shall guide you step-by-
step as you discover and understand the lesson prepared for you.
In addition to the material in the main text, Notes to the Teacher are also
provided to our facilitators and parents for strategies and reminders on how they
can best help you on your home-based learning.
Please use this module with care. Do not put unnecessary marks on any
part of this SLM. Use a separate sheet of paper in answering the exercises and
tests. And read the instructions carefully before performing each task.
If you have any questions in using this SLM or any difficulty in answering
the tasks in this module, do not hesitate to consult your teacher or facilitator.
Thank you.
What I Need to Know
This module was designed and written with you in mind. It is here to help
you familiarize the different tools used in genetic engineering. The scope of this
module permits it to be used in many different learning situations. The language
used recognizes the diverse vocabulary level of students. The lessons are arranged
to follow the standard sequence of the course. But the order in which you read
them can be changed to correspond with the textbook you are now using.
After going through this module, you are expected to describe the different tools
used in genetic engineering.
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What I Know
Directions: Read each question carefully. Choose the letter of the correct answer.
1. The term is defined as the basic physical and functional unit of heredity.
a. alleles c. genes
b. deoxyribonucleic acid d. ribonucleic acid
2. It is a branch of science that is concerned how various traits are inherited.
a. biological engineering c. heredity
b. genetics d. pathology
3. The process by which recombinant DNA technology is utilized to alter the genetic
makeup of an organism.
a. biological engineering c. genetic engineering
b. biological modification d. genetic modification
4. When did Hindll isolate the first restriction enzyme?
a. 1960 c. 1990
b. 1980 d. 1970
5. It is the first organism used in DNA technology experiments.
a. E. coli c. S. cerevisiae
b. E. faecalis d. S. typhimurium
6. This is a laboratory technique used to amplify a single copy or a few copies of a
segment of DNA across several orders of magnitude, generating thousands to
millions of copies of a particular DNA sequence.
a. Agarose Gel Electrophoresis c. Polymerase Chain Reaction
b. Molecular Scissor d. Restriction Endonuclease
7. The enzymes that make one incision on each of the two strands of DNA at
specific locations based on the nucleotide sequence are known as ______________.
a. DNA Polymerase I c. Primase
b. Helicase d. Restriction Endonuclease
8. He discovered the Polymerase Chain Reaction.
a. Hamilton Smith c. Kary Mullis
b. Hindll d. Werner Abner
9. It is a branch of biotechnology that deals with the study and investigation of
genomic information from trace evidence found at crime scenes. Agricultural
a. biotechnology c. Industrial biotechnology
b. Forensics biotechnology d. Medical biotechnology
10. It is a technique commonly used in laboratories to separate charged molecules
like DNA, RNA and proteins according to their size.
a. Gel Electrophoresis c. Polymerase Chain Reaction
b. Molecular Scissor d. Selection of Prokaryotic Host
2
Lesson
The Different Tools Used in
1 Genetic Engineering
What’s In
Our previous module learned that mutation could result from DNA copying
mistakes during cell division, exposure to ionizing radiation, exposure to chemicals
called mutagens, or infection by viruses. The majority of mutations have neither
negative nor positive effects on the organism in which they occur. These mutations
are called neutral mutations. While there is a mutation with positive effects, a
mutation can develop resistance to some diseases like atherosclerosis. These
mutations are called beneficial mutations. Lastly, a harmful mutation can cause
genetic disorders and diseases such as cancer and cystic fibrosis.
ACTIVITY 1
Direction: Match the types of mutation to their genetic codes and write the letter of
the correct answer before each number.
1. Duplication A.
2. Inversion B.
3. Normal Sequence C.
4. Deletion D.
5. Insertion E.
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ACTIVITY 2
Direction: Fill in the diagram with the different types of mutation.
(Note to the learners: You may draw the illustrated diagram on your answer sheet.)
Mutation
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What’s New
What is It
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successful discovery of CRISPR/Cas9, which was used nowadays as an editing tool
to modify genomes—a trailblazing development for medicinal purposes curing
genetic disorders in the near future. Furthermore, genetic engineering also made
cloning possible as it successfully cloned a mammal from an embryo cell, a sheep
named “Dolly,” and Ian Wilmut and his colleagues executed the said cloning.
However, what are the standard tools used in genetic engineering? Moreover,
how does genetic engineering help in the detection of viruses?
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THE DIFFERENT TOOLS USED IN GENETIC ENGINEERING
Here are tools that are commonly used in genetic engineering:
● Polymerase Chain Reaction (PCR) is efficient technique because it
multiplies the DNA exponentially for 25 to 75 cycles. A cycle takes only a minute,
and each new segment of DNA that is made can serve as a template for new ones.
This technique is used in molecular biology to amplify a single copy or a few copies
of a segment of DNA across several orders of magnitude, generating thousands to
millions of copies of a particular DNA sequence. Developed in 1983 by Kary Mullis,
PCR is now a common technique used in clinical and research laboratories for
various applications (Javed, 2017).
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Figure 2: Restriction Enzymes
Image Source: https://explorebiotech.com/10-tools-for-genetic-engineering/
● Gel Electrophoresis is used for various purposes, from viewing cut DNA to
detecting DNA inserts and knockouts. It is also used to estimate the molecular
weight of protein and nucleic acids, purification of isolated proteins, monitoring
changes of protein content in body fluids, blotting application, and many more.
Purifying DNA from cell culture or cutting it using restriction enzymes would
not be of much use if we could not visualize the DNA that is, find a way to view
whether or not your extract contains anything or what size fragments you have
cut it into. One way to do this is by gel electrophoresis (Tapeshwar, 2015).
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● DNA Ligase are enzymes that can create covalent bonds between nucleotide
chains. The enzymes DNA polymerase I and polynucleotide kinase are also
crucial in filling in gaps, or phosphorylating the 5′ ends, respectively. The DNA
ligase used in molecular cloning differs in their abilities to ligate noncanonical
substrates, such as blunt-ended duplexes DNA: RNA hybrid or ss DNAs. In
genetic research, DNA Ligase are often utilized to link two or more individual
strands of DNA, to create a recombinant strand, or close a circular strand that
has been cut with restriction enzymes (Faraza ,2017).
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o DNA-dependent DNA polymerase that replicates DNA from DNA.
o RNA-dependent DNA polymerase (reverse transcriptase) that transcribes
DNA from RNA.
o DNA-dependent RNA polymerase that transcribes RNA from DNA
● Prokaryotic Host are able to multiply their plasmids (along with foreign DNA)
also multiply to produce millions of copies, referred to as a colony or in a short
clone. The term ‘clone’ broadly refers to a mass of cells, organisms, or genes
that results from the multiplication of a single cell, organism, or gene.
Furthermore, the bacteria Escherichia coli, was the first organism used in the
DNA technology experiments and continues to be the host of choice by many
workers. Undoubtedly, E.coli, the simplest Gram-negative bacterium (a
common bacterium of human and animal intestines), has played a key role in
the development of present-day biotechnology. Under a suitable environment,
the number of E. coli can double every 20 minutes (Faraza ,2017).
• Eukaryotic Host are preferred to produce human proteins since these hosts
with complex structures (with distinct organelles) are more suitable to
synthesize complex proteins. The most commonly used eukaryotic organism is
the yeast, Saccharomyces cerevisiae. It is a non-pathogenic organism routinely
used in the brewing and baking industry. Certain fungi have also been used in
gene cloning experiments (Faraza ,2017).
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● Selection of Small Self-Replicating DNA
Small circular pieces of DNA that are not part of a bacterial genome, but are
capable of self-replication, are known as plasmids. Plasmids are often used as
vectors to transport genes between microorganisms. In biotechnology, once the
gene of interest has been amplified and restriction enzymes cut both the gene
and plasmid, they are ligated together, generating what is known as
recombinant DNA. Viral (bacteriophage) DNA can also be used as a vector, as
can cosmids, recombinant plasmids containing bacteriophage genes (Faraza
,2017).
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Figure 8: Selection of Transgenic Organisms
Image Source: https://explorebiotech.com/10-tools-for-genetic-engineering/
What’s More
1.DISPALM 6. ESEGN
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Assessment 1
1. What is DNA Ligase? And how is it used in genetic engineering?
2. How is the Polymerase chain reaction useful in the detection of viruses?
3. Why are genes functional in genetic engineering?
1. These are enzymes that can create covalent bonds between nucleotide chains.
2. It is the most commonly used eukaryotic organism.
3. It is considered as a common bacterium of the human and animal intestines.
4. It is the enzyme that transcribes RNA from DNA.
5. It is used to monitor the changes of protein content in body fluids.
6. These are enzymes used to cut DNA at specific locations based on the
nucleotide sequence.
7. It is a genetic engineering tool used to multiply the DNA exponentially for each
of the 25 to 75 cycles.
8. He discovered the PCR.
9. He isolated the first restriction enzyme in 1970.
10. These are enzymes that transcribe DNA from RNA
Assessment 2
1. How were restriction enzymes discovered?
2. Why is yeast the most commonly eukaryotic organism used for gene cloning
experiments?
3. How are the tools genetic engineering beneficial in medicine today? Justify your
answer.
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2. POLYMERASE CHAIN REACTION / MAKING DNA COPIES
_____ DNA polymerase starts making copies
_____ “primers” provide a lace for DNA polymerase
_____ DNA is heated to separate the strands and cooled to bind
3. TRANSFORMING BACTERIA
_____ Insert a human gene into plasmid / bacterial DNA
_____ The recombinant DNA is inserted in the bacterial cell
_____ The bacteria can produce the human protein
4. TRANSFORMING PLANT CELLS
___The plasmid can be used to infect plant cells that take up DNA on its own
___ Insert a piece of foreign DNA into the plasmid
___ Inactivate the tumor-producing gene of a bacterium
5. TRANSFORMING ANIMAL CELLS
____ The host gene may lose (knocked out) sequences in between
____ DNA molecule is constructed with two ends that may recombine with
specific sequences
____ The knocked-out gene is replaced with a new gene
Assessment 3
1. What is PCR? And how is the process of making DNA copies performed?
2. How is human insulin produced by genetically modified bacteria? Describe
the process and determine what tool in genetic engineering was used.
3. How is recombitant DNA generated?
The experiment was to test the safety of treatment and to determine the
maximum tolerated dose of an adenovirus vector with the OTC gene. Four days
after he received an infusion into his liver of recombinant virus, he died from
complications resulting from a clotting disorder and organ failure due to the
adenovirus. Interestingly, three monkeys had died of the same problem after they
received a stronger version of the adenovirus at a dose 20X higher than any of the
doses later used in the human experiment. Nevertheless, the experiment
proceeded.
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In 2003 nearly 30 gene therapy trials were canceled after two children
treated for ADA deficiency developed leukemia in a French trial. It was discovered
that the retrovirus had inserted next to an oncogene in a white blood cell to grow
uncontrollably, causing leukemia. The children were treated with chemotherapy.
These cases raise issues about gene therapy safety, although some experts say the
development of leukemia may have been specific to the SCID gene therapy trials.
Guide Questions:
Assessment 4
1. One of your siblings has a genetic disorder, and you were offered to undergo
clinical trials for free. Will you allow your sibling to undergo gene therapy?
Explain.
2. If you were a biologist, how would you address gene therapy safety issues
with possible patients?
Assessment 5
1. What is DNA Fingerprint Analysis?
2. How does rep-PCR relate to DNA fingerprinting?
3. How does pulsed-field gel electrophoresis relate to DNA fingerprinting?
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Activity 6: Crime Investigatory
Direction: Read the short article about Grace Hayden and answer the following
questions.
A single fingerprint and the actions of an “above and beyond” deputy led
investigators to arrest a man in North Carolina for allegedly murdering an elderly
woman 31 years ago in California, according to officials. Grace Hayden, 79, was
raped and killed in San Diego in May 1987, said Investigator Erich Hackney of the
Robeson County, North Carolina, District Attorney’s Office. San Diego District
Attorney Investigator Tony Johnson was reviewing Hayden’s brutal unsolved killing
when he found a single fingerprint from a left ring finger on Hayden’s kitchen stove,
Hackney said in a news release. “Johnson resubmitted the fingerprint through the
national fingerprint database,” Hackney said, and found a match to 62-year-old
Kevin Ford in Robeson County, North Carolina. When that warrant was served in
2015, Robeson County Sheriff’s Office Deputy John Blount happened to decide to
fingerprint Ford -- “something rarely done on a charge of this nature,” according to
Hackney. “It was this set of fingerprints that were taken by Blount that matched
the print left by Ford at the crime scene,” Hackney said.
A DNA sample was obtained from Ford to compare, and investigators found that it
matched DNA collected from the victim, Hackney said.
Source: abcnews.go.com
Guide Questions:
1. Should fingerprints be used as evidence? Why?
Assessment 6
1. How are fingerprints used to solve crimes?
2. In your perspective, are fingerprints valid enough to convict a person? Why?
Let’s sum up what you have learned. Read each item carefully. Complete its
meaning by supplying the correct term.
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4. These are enzymes that make one incision on each of the two strands of DNA
at specific locations based on the nucleotide sequence, namely __________.
What I Can Do
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In addition, the technological advancement of
genetic engineering gave us the pathway for the
availability of vaccines with different efficiency in some
countries, yet there are still side effects once you are
vaccinated.
Assessment
Directions: Read each question carefully. Choose the letter of the correct answer.
1. What do you call an organism that contains genes from two different organisms?
a. Altered genome organism
b. Mutant organism
c. Modified organism
d. Transgenic organism
3. sWhich of the following is the most challenging issue facing genome sequencing
or organism modification?
a. the availability and stability of DNA
b. the ethics of using information from genomes at the individual level
c. the inability to develop fast and accurate sequencing or modifying
techniques.
d. all of the above
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True or False. Write the word “True” if the statement is correct and write “False” if
the statement is incorrect.
1. Dolly the sheep was the first mammal cloned from an embryo cell.
2. Generally, it is easier to insert genes into plant, yeast, and bacteria
cells, rather than animal cells, rather than animal cells.
3. Criminology is another term for forensic science.
4. The use of DNA as a forensic tool began in the 1980s.
5. Gene therapy is a medical technique to treat or prevent disease.
Additional Activities
Directions: Make an editorial cartoon showing how the tools are used in genetic
engineering which are beneficial to humans in terms of health, agriculture, and
technology. Use the rubric below as your guide in your illustration.
CATEGORY 4 3 2
Required The cartoon All required elements All but one (1) of the
Elements includes all are included in the required elements
required elements cartoon. are included in the
as well as cartoon.
additional
information.
Graphics- All graphics are All graphics are All graphics relate to
Relevance related to the topic related to the topic the topic
and make it easier and most make it
to understand. easier to understand.
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What I know 6. GENES - The term is defined as the basic
1. c 6. c physical and functional unit of heredity.
2. b 7. d
3. c 8. c 7. DNA LIGASE- is a specific type of enzyme,
4. d 9. b that facilitates the joining of DNA strands
5. a 10. A together by catalyzing the formation of a
phosphodiester bond.
What’s In
Activity 1
8. POLYMERASES – are enzymes that catalyze
1. c 4. c
the synthesis of DNA from
2. e 5. b
deoxyribonucleotides, which are the building
3. a
blocks of DNA.
Activity 2
● Somatic
9. YEAST – a unicellular organism that converts
● Chromosomal Alterations
its food sugar and starch through
● Point
fermentation, into carbon dioxide and
● Frameshift
alcohol.
● Germline
10. AGAROSE – is a polysaccharide, which is
What’s New
generally extracted from certain red
1. b 4. e
seaweed. It is frequently used in Gel
2. a 5. d
Electrophoresis.
3. c
What’s More Assessment 1
Activity 1
1. PLASMID- a genetic structure in a cell that 1. DNA Ligase is a DNA-joining enzyme. And it
can replicate independently of the is used to link two or more individual
chromosomes, typically a small circular strands of DNA, to create a recombinant
DNA strand in the cytoplasm of a bacterium strand, or close a circular strand that has
or protozoan. been cut with restriction enzymes.
2. GENETIC ENGINEERING- The process by 2. It can identify and detect the viral nucleic
which recombinant DNA technology is acids.
utilized to alter the genetic makeup of an
organism. 3. Genes are the material that
genetic engineering aims to modify for
3. Gel Electrophoresis- is a technique enhancement the capabilities of an organism
commonly used in laboratories to separate
charged molecules like DNA, RNA and
proteins according to their size. Activity 2
1. e 6. f
2. h 7. c
4. MOLECULAR SCISSORS also known as 3. d 8. g
Restriction enzyme as they cleave DNA at or 4. a 9. b
near specific recognition sequences known 5. j 10.i
as restriction sites.
5. POLYMERASE CHAIN REACTION-
Polymerase chain reaction is a method
widely used to rapidly make millions to
billions of copies of a specific DNA sample,
allowing scientists to take a very small
sample of DNA and amplify it to a large
enough amount to study in detail.
Answer Key
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Assessment 2 Assessment 4
1. Werner Abner observed a dramatic 1. Answer may vary
change in the bacteriophage DNA after 2. Answer may vary
it invaded these resistant strains of
bacteria degraded and cut into pieces.
Activity 5
2. Yeast and human cells have little in
common, they both have a nucleus. 1. The adopted is the child #3 because he did
3. Answers may vary. not match to the fingerprints of both Mr.
and Mrs. Chan
Activity 3: Step Up
2. The child from the previous marriage is
1. C- B- A child #2 because they are match base on
2. A- B- C the fingerprinting
3. B- A- C
4. A- B- C 3. The child #1 and #4 are the children of Mr.
5. B- A- C and Mrs. Chan
6.
Assessment 3 Assessment 5
1. It is a technique used in molecular 1. It is a genetic engineering technology used
biology to amplify a single copy or a to establish a link between biological
few copies of a segment of DNA across evidence and a suspect in a criminal
several orders of magnitude, investigation.
generating thousands to millions of
copies of a particular DNA sequence. 2. Rep-PCR is used to generate unique DNA
And the process of making DNA are profiles or fingerprints of individual
the following: microbial strains.
● DNA polymerase starts making copies.
● “primers” provide a lace for DNA 3. PFGE is used to produce a DNA fingerprint
polymerase. for a bacterial isolate, wherein the electric
● DNA is heated to separate the strands charge will run through the DNA.
and cooled to bind.
2. The process of production of Humulin Activity 6
by bacteria follows the steps:
1. Fingerprint evidence is used in
● The recombinant DNA is inserted in
the bacterial cell investigations for criminal cases often, and
● Insert a human gene into plasmid / the findings are frequently used to
bacterial DNA determine if someone is connected to the
● The bacteria can produce the human crime or was naturally part of the scene.
protein
3. The process of generating recombinant Assessment 6
DNA follows the steps:
1. Fingerprints collected at a crime scene, or
● Study and determine the specific gene
needed on items of evidence from a crime, have
● Restriction enzymes cut the desired been used in forensic science to identify
DNA sequence suspects, victims and other persons who
Sticky ends are joined by DNA ligase touched a surface.
2. Fingerprints Can Identify, But Not
Necessarily Convict.
Activity 4: Let’s Investigate
*Answer may also vary
1. Gene therapy is a medical field which
focuses on the utilization of the
therapeutic delivery of nucleic acids
into a patient's cells as a drug to treat
disease.
2. Gene therapy replaces a faulty gene or
adds a new gene in an attempt to cure
disease or improve your body's ability
to fight disease.
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What I Have Learned Assessment
Multiple choice
1. Genetic Engineering 1.D
2. Genetic Engineering 2.D
3. Gel electrophoresis
3.B
4. Molecular scissors
5. Polymerase chain reaction 4.A
6. Forensics biotechnology 5.C
7. Heredity True or false
8. Genetics 1. True
9. Fingerprint 2. True
10. rt-PCR 3. False
4. True
5. True
Additional Activities
*Illustrate an editorial cartoon showing how
the tools used in genetic engineering are
beneficial to human in terms of health,
agriculture and technology.
References
Geib, Claudia. 2018. “We’re Getting Closer to Cloning Humans. Here’s What’s
Stopping Us.” Center for Genetics and Society. 2018.
https://www.geneticsandsociety.org/article/were-getting-closer-cloning-
humans-heres-whats-stopping-us.
Human Cloning. n.d. Human Cloning | Center for Genetics and Society. Accessed
January 11, 2021. https://www.geneticsandsociety.org/topics/human-
cloning.
Shapiro, Emily. 2018. How a single fingerprint led to arrest in cold case murder of
elderly woman 31 years later: Officials. Retrieved from
https://abcnews.go.com/US/single-fingerprint-led-arrest-cold-case-murder-
elderly/story?id=56535934
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