Professional Documents
Culture Documents
Micro Lab
Micro Lab
MPH@2020
Microbiology
Laboratory
Safety Rules
Lesson 1
MPH@2020
Microbiology Laboratory
Safety Rules
●
Never work alone in the laboratory without
permission and prior knowledge of the
instructor.
●
Do not engage in rowdy, playful, or
unprofessional activities in the laboratory. This
includes not being disrespectful of your
instructor or classmates.
●
Work surfaces must be disinfected at the
beginning and at the end of every laboratory
period.
https://www.actx.edu/biology/microbiology-laboratory-safety-rules#: MPH@2020
Microbiology Laboratory
Safety Rules
4. All students must wash their hands at the
beginning of lab and at the end of every
laboratory period.
5. No eating or drinking is permitted in the
laboratory. No open food or beverage can be
taken into the laboratory.
6. Lab benches are to be kept free of extraneous
items while conducting experiments. This
includes personal items such as backpacks, cell
phones, and unnecessary books.
https://www.actx.edu/biology/microbiology-laboratory-safety-rules#: MPH@2020
Microbiology Laboratory
Safety Rules
7. Students must wear closed-toe shoes that
cover the top of the foot, and appropriate
clothing, at all times in the laboratory.
8. Students must wear examination gloves
when handling microorganisms. Wear lab
aprons or lab coats as advised by your
instructor. Wear safety glasses when
handling bacterial broth cultures, doing Gram
stains, and as otherwise advised by your
instructor.
https://www.actx.edu/biology/microbiology-laboratory-safety-rules#: MPH@2020
Microbiology Laboratory
Safety Rules
9. Keep hands away from your face, eyes, and
mouth when working with chemicals or
microorganisms. This includes not applying
cosmetics, not adjusting contact lenses, and
not biting your finger nails.
10. If any chemicals or other agents splash into
your eyes, immediately go to the nearest sink
and flush your eyes with water.
https://www.actx.edu/biology/microbiology-laboratory-safety-rules#: MPH@2020
Microbiology Laboratory
Safety Rules
11. Take special precaution when working with open
flames. Loose hair, clothing, dangling jewelry,
and nearby paper must be secured. Do not
leave a heat source (hot plate or Bunsen burner)
unattended. Keep containers of alcohol,
acetone, or other flammable liquids at a safe
distance from flames.
12. Report ANY and ALL accidents, spills,
BREAKAGES, or injuries to the instructor, no
matter how trivial they appear.
https://www.actx.edu/biology/microbiology-laboratory-safety-rules#: MPH@2020
Microbiology Laboratory
Safety Rules
13.Any pregnant or immunocompromised student must notify
the instructor of the course. A pregnant student is required
to wear safety glasses and 2 sets of examination gloves
when handling any bacterial broths or cultures.
14.Do not remove cultures, reagents, or other materials from
the laboratory unless specific permission from the instructor
has been granted.
https://www.actx.edu/biology/microbiology-laboratory-safety-rules#: MPH@2020
Microbiology Laboratory
Safety Rules
15.Do not use any lab equipment without instruction and
authorization from the instructor. Report any damaged or
broken equipment to your instructor immediately.
16.Students must assume that all of the organisms that they
work with in this laboratory are potential pathogens
(disease-producing microbes). However, our laboratory
does not require the use of any highly infectious human
pathogens.
https://www.actx.edu/biology/microbiology-laboratory-safety-rules#: MPH@2020
Proper Waste
Disposal
MPH@2020
Proper Waste Disposal
https://www.actx.edu/biology/microbiology-laboratory-safety-rules#: MPH@2020
Proper Waste Disposal
https://www.actx.edu/biology/microbiology-laboratory-safety-rules#: MPH@2020
Proper Waste Disposal
6. Students must not leave the laboratory and must not touch
any equipment such as microscopes, any personal items
such as cell phones, or any doorknobs while wearing
examination gloves.
7. Disposed uncontaminated gloves in the regular trash and
disposed of contaminated gloves in a biohazard waste
container.
https://www.actx.edu/biology/microbiology-laboratory-safety-rules#: MPH@2020
Proper Waste Disposal
6. Students must not leave the laboratory and must not touch
any equipment such as microscopes, any personal items
such as cell phones, or any doorknobs while wearing
examination gloves.
7. Disposed uncontaminated gloves in the regular trash and
disposed of contaminated gloves in a biohazard waste
container.
https://www.actx.edu/biology/microbiology-laboratory-safety-rules#: MPH@2020
Activity 1
Microbiology Laboratory Safety Rules
MPH@2020
Laboratory
Equipment
Use in
Microbiology
Lesson 2
MPH@2020
Laboratory Equipment Use in
Microbiology
MPH@2020
Laboratory Equipment Use in
Microbiology
MPH@2020
Laboratory Equipment Use in
Microbiology
MPH@2020
Activity 2:
Laboratory Equipment Use in Microbiology
MPH@2020
Control of Microbial
Growth
Control of microbial growth in the
pharmaceutical preparation is crucial.
Microbial growth affects the overall
condition of the product. Product
deterioration, loss of potency, and initiate
infection to the user are some of the
effects of microbial contamination.
Prevention of contamination is being done,
such as aseptic technique and disinfection
(D'Ugo,2016).
MPH@2020
Control of Microbial
Growth
The control of microbial growth is significantly
important not only in the pharmaceutical industry
but as well as in food and agriculture
(Alnaimat,2012).
Two basic ways:
1.By killing microorganisms or
2.By inhibiting the growth of microorganisms
MPH@2020
Control of Microbial
Growth
Control of growth usually involves
the use of physical or chemical
agents which either kill or prevent
the growth of microorganisms
(Alnaimat,2012).
This could be:
1.Bactericidal
2.Bacteriostatic
MPH@2020
Control of Microbial
Growth
Agents which kill cells are called cidal agents;
agents which inhibit the growth of cells (without
killing them) are referred to as static agents
(Alnaimat,2012).
Sterilization is the complete destruction or
elimination of all viable organisms (in or on an
object being sterilized). Sterilization procedures
involve the use of heat, radiation or chemicals, or
physical removal of cells.
MPH@2020
Control of Microbial
Growth
Methods of Sterilization
(Alnaimat,2012).
Heat: most important and widely used..
1.Incineration: burns organisms and
physically destroys them. Used for
needles , inoculating wires, glassware,
etc. and objects not destroyed in the
incineration process.
MPH@2020
Control of Microbial
Growth
Methods of Sterilization
(Alnaimat,2012).
Heat: most important and widely used..
2.Boiling: 100°C for 30 minutes. Kills
everything except some
endospores. To kill endospores,
sterilize the solution, very long or
intermittent boiling is required.
MPH@2020
Control of Microbial
Growth
Methods of Sterilization
(Alnaimat,2012).
Heat: most important and widely used..
3.Dry heat (hot air oven): 160°C/2hours
or 170°C/1hour. Used for glassware,
metal, and objects that won't melt.
MPH@2020
Control of Microbial
Growth
Methods of Sterilization (Alnaimat,2012).
Heat: most important and widely used..
4.Pasteurization : is a process of heating a food, which is
usually a liquid, to a specific temperature for a predefined
length of time and then immediately cooling it after it is
removed from the heat. This process slows spoilage due to
microbial growth in the food. Unlike sterilization, pasteurization
is not intended to kill all microorganisms in the food. Instead, it
aims to reduce the number of viable pathogens so they are
unlikely to cause disease.
MPH@2020
Control of Microbial
Growth
Methods of Sterilization (Alnaimat,2012).
Heat: most important and widely used..
5.Autoclaving (steam under pressure
or pressure cooker): 121°C for 15
minutes (15 Ib/sq pressure). Good for
sterilizing almost anything, but heat-labile
substances will be denatured (degrade)
or destroyed.
MPH@2020
Control of Microbial
Growth
Methods of Sterilization (Alnaimat,2012).
Irradiation: usually destroys or distorts
nucleic acids. Ultraviolet light is usually
used (commonly used to sterilize the
surfaces of objects), although x-rays and
microwaves are possibly useful.
MPH@2020
Control of Microbial
Growth
Methods of Sterilization (Alnaimat,2012).
Filtration: involves the physical removal
(exclusion) of all cells in a liquid or gas,
especially important to sterilize solutions
which would be denatured by heat (e.g.
antibiotics, injectable drugs, amino acids,
vitamins, etc.)
Denaturation is the alteration of a protein shape through some form of external stress (for example, by
applying heat, acid or alkali), in such a way that it will no longer be able to carry out its cellular function.
MPH@2020
Control of Microbial
Growth
Methods of Sterilization (Alnaimat,2012).
Chemical and gas:
Alcohol 70% : Antiseptics and disinfectants
Formalin:( Formaldehyde) is an organic compound with the formula CH2O,
used as disinfectants.
Ethylene oxide gas : This highly reactive gas (C2H4O) is flammable, toxic,
and a strong mucosal irritant, used for contaminated medical tools.
Halogens: Chlorine, iodine, and derivatives of these halogens are suitable
for use as disinfectants. Chlorine and iodine show a generalized
microbicidal effect and also kill spores
MPH@2020
The Effectiveness of Hand
washing
In the microbiology laboratory, handwashing
is an effective way to protect the microbial
cultures, the staff, and the community.
A laboratory session should start with
washing hands with soap or detergent to
remove transient microbes that might
contaminate culture.
Likewise, the last thing to do before leaving the area is to wash
thoroughly and disinfect the hands to remove pathogens.
https://www.youtube.com/watch?v=3PmVJQUCm4E MPH@2020
Activity 3:
Proper Hand Washing
MPH@2020
The
Microscope
Lesson 4
MPH@2020
The Microscope
MPH@2020
Parts of
Microscope
MPH@2020
Computing total
Magnification
The ocular lenses typically magnify images 10 times (10 ). At the
other end of the body tube are a set of objective lenses on a
rotating nosepiece. The magnif ication of these objective lenses
typically ranges from 4 to 100 , with the magnif ication for each
lens designated on the metal casing of the lens. The ocular and
objective lenses work together to create a magnif ied image. The
total magnif ication is the product of the ocular magnif ication times
the objective magnif ication:
Total magnif ication = ocular magnif ication × objective magnif ication
Ex. TM = (10x) x (40x); TM = 400x
Molly Smith, Lab Manual: Microbiology for Allied Health Students, 2018 MPH@2020
How to use a microscope?
1.Turn the revolving nose piece so that the lowest power objective lens
(eg. 4x) is clicked into position.
2.Place the microscope slide on the stage and fasten it with the
stage clips.
3.Look at the objective lens and the stage from the side and turn
the focus knob so the stage moves upward. Move it up as far as
it will go without letting the objective touch the coverslip.
4.Look through the eyepiece and move the focus knob until the
image comes into focus.
https://www2.mrc-lmb.cam.ac.uk/microscopes4schools/microscopes2.php MPH@2020
How to use a microscope?
5.Adjust the condenser and light intensity for the greatest amount of
light.
6.Move the microscope slide around until the sample is in the
centre of the f ield of view (what you see).
7.Use the f ine focus knob to place the sample into focus and
readjust the condenser and light intensity for the clearest image
(with low power objectives you might need to reduce the light
intensity or shut the condenser).
https://www2.mrc-lmb.cam.ac.uk/microscopes4schools/microscopes2.php MPH@2020
How to use a microscope?
8.When you have a clear image of your sample with the lowest power
objective, you can change to the next objective lenses. You might
need to readjust the sample into focus and/or readjust the condenser
and light intensity. If you cannot focus on your specimen, repeat
steps 3 through 5 with the higher power objective lens in place. Do
not let the objective lens touch the slide!
9.When f inished, lower the stage, click the low power lens into
position and remove the slide.
https://www2.mrc-lmb.cam.ac.uk/microscopes4schools/microscopes2.php MPH@2020
How to use a microscope?
MPH@2020
Morphology of Bacteria
Cocci
S.Aureus
MPH@2020
Morphology of Bacteria
Bacilli
E.Coli
MPH@2020
Morphology of Bacteria
Vibrio
Vibrio cholerae
MPH@2020
Morphology of Bacteria
Spirochete
Treponema palladium
MPH@2020
Microorganisms in Living
State
Bacteria move by means of flagella
whereas protozoans use either the flagella,
cilia, or pseudopods for movement.
True motility should not be mistaken for
Brownian movement which is the random
movement produced by currents in liquids
causing organisms to vibrate and move.
Motile organisms can be observed in their Pseudomonas using a single polar
natural living state using wet mount flagellum for movement
MPH@2020
Microorganisms in Living State
https://www.facebook.com/100001512
735584/videos/3701216496605405/
MPH@2020
Activity 5
Morphology and living state of
microorganisms
1.Give five examples of microorganisms base on shape.
(Cocci, Bacilli, vibrio, spirochete)
2. Aside from observing motility, what are the other uses of
the wet mount and hanging drop method?
3. Prokaryotic organisms like bacteria use the flagella for
movement. What is the basic structure of a flagellum?
4. Aside from flagella, the other structure for motility are
pseudopods. What are pseudopods? Name some
organisms using these structure for movement.
MPH@2020
Staining
Techniques in
Microbiology
Lesson 6
MPH@2020
Staining Technique in
Microbiology
Studying bacteria and other microorganisms in their natural
state can be difficult. Aside from being extremely small,
bacteria and microorganisms are also color less and
transparent when examined under the microscope.
To visualize them, stains or dyes are used to impart color and
provide contrast to their surroundings.
Stain used in microbiology are either basic, acidic, or neutral.
They are salt composed of a positive and a negative ion.
On the other hand, Basic dyes, also called nuclear stains, have
positive charged chromophores that stain those cell parts that
are negatively charged.
Neutral stains, on the other hand, consist of a mixture
Basic dyes includes: of acidic and basic dyes.
1.Crystal violet
2.Methylene blue
3.Safranin
4.Malachite green
Bacteria smear
https://www.youtube.com/watch?v=on5-5oQNNqo
Bognot, Laboratory Manual in Microbiology and Parasitology 2 nd ed;2015 MPH@2020
Staining Technique in Microbiology
Differential staining:
Distinguish bacteria according to their reaction to particular
stains. An example of very useful differential staining technique
is the gram stain procedure that classified bacteria as either
Gram-positive or Gram negative.
https://www.youtube.com/watch?v=AZS2wb7pMo4
https://www.youtube.com/watch?v=JVn6ZRFtARs
Bognot, Laboratory Manual in Microbiology and Parasitology 2 nd ed;2015 MPH@2020
Activity 6:
Staining Technique in Microbiology
MPH@2020
Microbiological Culture Media
preparation
Microbes, including bacteria and fungi, need nutrients like
carbon, nitrogen and other growth factors in order to survive.
In the laboratory, the nutrient preparations for culturing
microorganisms are called media.
This media maybe in:
1.Liquid
2.Semi-solid
3.Solid form
MPH@2020
Inoculation method: Aseptic Culture
Techniques
In the laboratory, microbes must be cultured in
order to facilitate identification and to examine
their growth and metabolic characteristics.
Microbes are inoculated or introduced into
various forms of culture media to keep them
alive for study.
Inoculation must be done through aseptic technique to prevent
contamination with unwanted microbes or contaminants.
This technique usually involves:
MPH@2020
Bacterial Culture Characteristics in
Different Microbiological Media
The cultural characteristics of organisms like bacteria pertain
to their macroscopic appearance on different kinds of culture
media.
Microbes are cultured or grown into culture media to increase
their number during the incubation period.
After a suitable period, some of the dispersed cells develop
into colonies.
A colony is a population of cells arising from a single bacterial
cell in a solid medium. It is visible to the naked eye.
http://www.medical-labs.net/bacterial-colony-morphology-2-887/ MPH@2020
Bacterial Culture Characteristics in
Different Microbiological Media
Some examples of SHAPES:
http://www.uwyo.edu/molb2021/virtual-edge/lab01/colony_morphology.html MPH@2020
Bacterial Culture Characteristics in
Different Microbiological Media
Some examples of ELEVATION:
agar surface
● Rubbery – the whole colony comes off the agar surface.
needle.
MPH@2020
Chemical Control of Microorganisms
MPH@2020
The Kirby-Bauer Disk Diffusion
Method
The chemotherapeutic agents used to treat
diseases are collectively referred as
antimicrobial agents. An antimicrobial agents
is any chemical drug used to treat infection,
either by inhibiting or killing pathogens in vivo.
https://www.researchgate.net/figure/Zone-diameter-interpretive-standards-chart-for-the-determination-of-antibiotic-sen_tbl1_261636878 MPH@2020
Activity 11:
The Kirby-Bauer Disk Diffusion Method
MPH@2020
Oligodynamic Action of Metal
Against Bacteria
Oligodynamic action is the ability of some
metals, notably silver, zinc, and copper to kill or
inhibit the growth of microorganisms such as
bacteria when used in very dilute solution.
It means that selected metals and metal
compounds in small quantities of water have
the ability to change and finally eliminate
bacteria. Also, these metallic elements have
been observed to inactivate enzymes and inhibit
bacterial growth.
Bognot, Laboratory Manual in Microbiology and Parasitology 2 nd ed;2015 MPH@2020
Oligodynamic Action of Metal
Against Bacteria
https://pubmed.ncbi.nlm.nih.gov/393905
7/#:~:text=subtilis%20and
%20Legionellaceae%20exhibited
%20the,rods%20was%20the%20most
%20resistant.
MPH@2020
Hospital-
Acquired
Disease:
Nosocomial
Infection
Lesson 13
MPH@2020
Hospital-Acquired Disease:
Nosocomial Infection
Hospital-acquired infections or
nosocomial infections are caused
by various bacteria, viruses, or
even fungi when a patient is
undergoing medical care.
Persons exposed to the physical
environment of a hospital like
medical and support staff, and
even people visiting the hospital
can acquire nosocomial infections.
Bognot, Laboratory Manual in Microbiology and Parasitology 2 nd ed;2015 MPH@2020
Hospital-Acquired Disease:
Nosocomial Infection
Infections are a major problem in
most healthcare setting today.
Several studies revealed that they
can be acquired by prolonged
hospital stay or confinement that
last approximately one to two
weeks.
Manifestation may become clinically
apparent either during the hospital
stay or after discharge.
Bognot, Laboratory Manual in Microbiology and Parasitology 2 nd ed;2015 MPH@2020
Hospital-Acquired Disease:
Nosocomial Infection
Pathogens that can cause
nosocomial infection often develop
resistance to standard antimicrobial
making therapy and control more
difficult and costly.