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Construction of Compartmental Models For COVID-19 With Quarantine, Lockdown and Vaccine Interventions
Construction of Compartmental Models For COVID-19 With Quarantine, Lockdown and Vaccine Interventions
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Abstract: The COVID-19 disease caused by Severe Acute Respiratory Coronavirus 2 (SARS-CoV-2)
has been declared as a pandemic. To curb the spread of the virus, some preventive and control measures
were outlined by the World Health Organization. The implementation of these measures depends on
the severity of the infection and the countries’ prowess in battling the virus. On this premise, several
compartmental models are formulated to investigate the dynamics of the coronavirus disease across the
globe by taking into account some of these control measures. These models explain the transmissibility
of the virus by considering quarantine, lockdowns, and vaccinations. The equations presented include
the customary SIR and SEIR models. Moreover, these baseline equations are extended to account
for quarantine, isolation, partial and total lockdowns, and vaccination programs. A flow diagram is
presented in each case to elucidate the transmission phases of the coronavirus disease. Again, the SIR
model is simulated to practically explore the dynamics of coronavirus in Ghana based on available
data up until 9th April 2020. Instances when the basic reproductive number does not exceed one, the
models predict that the coronavirus disease will be wiped-out in Ghana within the next two to four months.
1 Introduction
The novel coronavirus disease 2019 (COVID-19) is a newly recognized disease that accelerates spread in
Wuhan the capital city of Hubei province. In January of 2020, the pathogen was identified as a novel
-coronavirus by the Chinese Center for Disease Control and Prevention (CDC) from the throat swab
sample of a patient. The International Committee on Taxonomy of Viruses officially named the pathogen
as the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) [1]. Coronaviruses are pathogens
∗
gabriel.obed@presbyuniversity.edu.gh
†
joeopong@presbyuniversity.edu.gh
‡
justicekwameappati@gmail.com
µ γ
γ β α1 γ
S I R
Figure I: A compartmental diagram for an SIR case with death and recovered in the same compartment
The model equations deduced from Figure I are displayed by equation (1).
S 0 (t) = µN − βSI − γS
I 0 (t) = βSI − (γ + α1 )I (1)
0
R (t) = α1 I − γR
N is the total populations size such that N = S 0 (t) + I 0 (t) + R0 (t). βSI is the bi-linear incidence term.
It indicates a homogeneous mix of the susceptible and the infected population.
Figure II illustrates the case, where the model specifically account for death as a result of the
coronavirus death. υ is the death rate of the coronavirus disease. This lead to a modification of I 0 (t)
equation in (1) as:
I 0 (t) = βSI − (γ + α1 + υ)I (2)
γ β α1 γ
S I R
Figure II: A compartmental diagram for an SIR case with death and recovered in the different
compartment
With regards to the coronavirus disease, birth and natural death have been observed to be minimal
during this pandemic period. Hence, the effect of birth and natural death could be assumed to offset
each other. This simplifies the SIR model (1). Here, the transition rate from the S compartment to the I
compartment is βI/N , where I/N is the probability that the virus will be transmitted from an infected
person to a susceptible individual if there is a contact. Incorporating these assumptions, the SIR model
(1) reduces to:
I
S 0 (t) = −βS
N
I (3)
I 0 (t) = βS − α1 I
N
R0 (t) = α1 I
An alternative SIR equation that describes the spread of COVID-19 is the model with varying time-
dependent parameters. Because of the continual control measures, the outflow rates of this compartmental
model keeps changing with respect to time. For example, the rate of infection prior to lockdowns, closure
of borders, and restrictions on public gathering, will differ after such measures have been implemented.
Moreover, the rate of recovery when a country is not endowed with adequate ventilators, medicine, and
health care workers may differ from the rate of recovery when the same country has enough of such to
support its SARS-CoV-2 patients. With these instances, the outflow parameters of the SIR model (3) is
modified to incorporate the time-varying transmissions. The modified time-varying equation is given as:
I
S 0 (t) = −β(t)S
N
I (4)
I 0 (t) = β(t)S − α(t)I
N
R0 (t) = α(t)I
µ γ γ
γ β1 α1 γ
S E I R
ξ
S 0 (t) = µN − β1 SI − γS + ξE
E 0 (t) = β1 SI − (γ + + ξ)E
(5)
I 0 (t) = E − (γ + α1 )I
R0 (t) = α1 I − γR
γ
Is
µ γ α4
κ
γ β1 γ
S E φ R
ξ
(1 − κ) α3
Ia
γ
Figure IV: A compartmental diagram for an SEIR model with asymptomatic and symptomatic classes
For Figure IV, the proportion of exposed persons that enters the symptomatic compartment is denoted
by κ, while (1 − κ) is the remaining portion that enters the asymptomatic compartment. Infectivity
is reduced by the factor τ . The model equations obtained from the SEIs Ia R diagram IV is given by
equation (6). The removal rate for asymptomatic and symptomatic patients are α3 and α4 respectively.
S 0 (t) = µN − β1 S(Is + τ Ia ) − γS + ξE
E 0 (t) = β1 S(Is + τ Ia ) − (γ + + ξ)E
Is0 (t) = kE + φIa − (γ + α4 )Is (6)
Ia0 (t) = (1 − k)E − [γ + α3 + φ]Ia
0
R (t) = α4 Is + α3 Ia − γR
γ β α1 γ
S I R
α2
θ1
γ
Q
The removal rate after being quarantined is α2 . The model equations deduced from Figure V are:
S 0 (t) = µN − βSI − γS
I 0 (t) = βSI − [γ + θ1 + α1 ]I
(7)
Q0 (t) = θ1 I − (γ + α2 )Q
R0 (t) = α1 I + α2 Q − γR
γ β1 α1 γ
S E I R
ξ
θ1
θ2 α2
γ
Q
control the spread of the virus. Such persons become prone to the infection once they move from their
restricted zones (lockdown) to the susceptible compartment. Persons under lockdowns who are found
to have the virus are classified as quarantined. Figure VII is a flow chart that further explains this
conceptualization. η and δ are the parameters accounting for movement to-and-fro the susceptible and
lockdown compartments.
µ γ
γ β α1 γ
S I R
α2
δ η θ1
γ γ
L Q
µ γ γ
γ β1 α1 γ
S E I R
ξ
δ η θ1
θ2 α2
γ γ
L Q
Figure VIII: A compartmental diagram for an SEIR model with Quarantine and Lockdowns
S 0 (t) = µN − β1 SI − (γ + η)S + δL + ξE
L0 (t) = ηS − (γ + δ)L
E 0 (t) = β1 SI − [γ + θ2 + + ξ]E
(10)
I 0 (t) = E − [γ + θ1 + α1 ]I
Q0 (t) = θ1 I + θ2 E − (γ + α2 )Q
R0 (t) = α1 I + α2 Q − γR
γ β1 α1 γ
S E I R
ξ
α2
ω1 θ1
θ2
γ γ
V Q
Figure IX: A compartmental diagram for an SEIR model with Quarantine and Vaccinations
In addition, the SEIR model with quarantine and vaccinations are given by equations (12).
S 0 (t) = µN − β1 SI − (γ + ω1 )S + ξE
V 0 (t) = ω1 S − γV
E 0 (t) = β1 SI − [γ + θ2 + + ξ]E
(12)
I 0 (t) = E − [γ + θ1 − α1 ]
Q0 (t) = θ1 I + θ2 E − (γ + α2 )Q
R0 (t) = α1 I − γR + α2 Q
The epidemiological models presented here could all be used to analyze the spread and control of the
novel coronavirus disease. The choice may depend on the eradication strategies, control measures, and
the availability of data. In the next section, the SIR model (3) is adapted to explain the dynamics of
the coronavirus disease in Ghana. The choice of this model is attributed to the none availability of data.
However, countries’ with sufficient data could adapt any of these models to instigate the trends of the
coronavirus disease.
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Parameters Definition
µ Birth rate
γ Natural death rate
υ The death rate of coronavirus disease
α1 The rate of outflow from infections to removed compartment
α2 The rate of outflow from quarantined to removed compartment
α3 The rate of recovery of asymptomatic patients
α4 The rate of recovery of symptomatic patients
α(t) Time-varying recovery rate
Incubation/latency rate
β The rate of outflow from susceptible to infected compartment
β1 The rate of outflow from susceptible to exposed compartment
β(t) Time-varying transmission rate
τ Infectivity factor
ξ The rate of inflow into susceptible from the exposed compartment
κ The proportion of outflow from exposed to symptomatic compartment
φ The rate of outflow from asymptomatic to symptomatic compartment
θ1 The rate of outflow from infected to quarantine compartment
θ2 The rate of outflow from exposed to quarantine compartment
η The rate of inflow to lockdown from the susceptible compartment
δ The rate of outflow from lockdown to the susceptible compartment
ω1 The proportion of the susceptible class that have received vaccination
3 Simulation Results
The SIR model (3) is used to explain the dynamics of COVID-19 in Ghana. The steady-state formulation
of equation (3) is
I
−βS =0
N
I (13)
βS − α1 I = 0
N
α1 I = 0
that is
S 0 (t) = I 0 (t) = R0 (t) = 0 (14)
The endemic equilibrium is obtained by solving equation (13). These steady-state values are
substituted into the Jacobian matrix to mathematical determine the state of the virus. Hither, the
state of the virus is determined graphically using MATLAB simulations.
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The simulations (Figures X-XII) explains how the susceptible, infected, and removed populations drift
over time. A total of 365 days is chosen for the simulation. The reference or zeroth day is 9th April 2020.
Since fractional values are used the profiles of these plots along the x-axis are asymptomatic to the x−axis.
They are not zeros as projected by the plots.
From Figures X to XII the infection rate is increased from 0.11 to 0.40 to observe the dynamics of
the coronavirus. Particularly, for Figure X, it is observed that the disease is likely to affect half of the
population when β = 0.4. In this case, either the virus or the population will be annihilated in 90 days.
A serious intervention may annihilate the virus. On the other hand, the increasing number of deaths as
a result of infections may also annihilate the population.
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Comparing this result to β = 0.11 and β = 0.20 on this same figure X, fewer people may be infected
but may take quite some time for the disease to be wiped out. This is further explored in Figure XIII.
These plots attain flatter tops as the rate of infection is reduced.
Graphically, the population dynamics of Figures X to XII are quite similar, with the exception that
the infectious period is varied among 5.8 days, 10.5 days, and 14 days. From Figures XI and XII, the
disease dies out from the population when β = 0.11. This lower transmission rate could be attributed
to effective measures by the government in eradicating the virus. In such case, it may take the country
a maximum of 60 days for all infected persons to move into the removed compartment. This is clarified
using Figure XIV. Observably, the graphs of the infected population become asymptotic to the x-axis
after the 60th day. This indicates that the virus would be eliminated from the population in the next few
months. This will be realized when the infection rate falls below 0.04, while the recovery rate is 0.0948.
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Figure XIV: The rate of decay of the infected population for cases of R0 < 1
4 Conclusion
In this paper, some mathematical models were formulated to give insight into the spread and eradication of
the novel coronavirus disease. These models characterize the spread of the coronavirus disease across the
globe depending on some eradication and control measures. Measures such as quarantining, lockdowns,
and vaccinations were incorporated into the classical SIR and SEIR compartmental models. Except for the
classical SIR model, the vital demographic quantities were included in all formulations. Notwithstanding
that a thorough analysis of these models is reserved as future work. The dynamics of the coronavirus
cases in Ghana was evinced using the SIR model. The SIR model predicted that in an endemic state
it will take a maximum of 120 days for the entire population to move into the removed compartment.
However, in the disease-free state, it will take approximately 50 to 80 days for Ghana to totally wipe-out
the coronavirus disease.
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