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Streptococcus Pneumoniae by Use of Alternate Sources of
Streptococcus Pneumoniae by Use of Alternate Sources of
10]
Original Article
Abstract
Background: The isolation of S. pneumoniae (Sp) depends on specimen integrity / transport, media and expertise. The non-availability of
sheep blood agar poses a challenge in identification of colonial morphology and identification in India. Methods: Laboratories processed
swabs containing either pure Sp or Sp in mixed cultures with a second (confounding) bacterium shipped across the country in cold conditions.
Duplicate set of swabs was shipped back to the central laboratory to assess the impact of shipping on culture viability. The identical swab
was cultured on sheep, human blood and one additional agar plate used in the laboratory. Results: 46/60(77%) of cultures containing only Sp
were correctly identified. In specimens where Sp was present in mixed culture, the proportion of isolates in which Sp was correctly identified
varied, with most variability attributed to the particular confounding organism rather than the media. There was no discernible impact of
temperature-controlled (4-6°C) transport on the isolation of Sp from culture swabs. Conclusions: The study clearly elucidates the ability of
laboratories for isolation of S. pneumoniae on human blood agar in resource limited settings. The results highlight the difficulties inherent
in correctly identifying pathogens in mixed cultures in needs improvement using standardized tests across the study centers. The study also
reaffirms the ability to transport biological specimens over long geographical distances without loss.
Keywords: Blood supplementation, efficacy, isolation, Streptococcus pneumoniae, transport under cold conditions
© 2020 Indian Journal of Medical Microbiology | Published by Wolters Kluwer - Medknow 363
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on agar plates prepared from human blood rather than animal laboratory utilised an agar plate of their selection as a
blood, which may result in errors in pathogen identification.[1,4] comparator [Table 1].
This altered growth and haemolysis may be due to differences
Rabbit plasma, Optochin and Bacitracin disks (all from
in red cell morphology and membrane composition, which
Hi‑media Laboratories, Mumbai, India) and bile esculin
impact lysis by bacterial haemolysins.[2,8,9,16,21,22,27,29‑37,39] The
medium (Fitech Chemitron, Bengaluru, India) were supplied
human blood may expose the laboratory worker to blood‑borne
to the laboratories to ensure uniformity in the performance of
pathogens, have inhibitory antibodies and antibiotics which
may impact isolation of SP. To date, there have been few biochemical tests.
studies assessing the performance of laboratories in identifying Study design
pneumococcus based on the source of blood used for blood Ten laboratories (study sites) in five metropolitan
agar.[2,3] cities (Bengaluru, Delhi, Kolkata, Mumbai and Pune) across
There is an acknowledged need for improving the quality and India were participated. The laboratories selected included
capacity of developing world laboratories to identify common seven hospital‑based laboratories (one medical college), two
bacterial pathogens. Characterisation of variability among diagnostic laboratories and one quality control laboratory.
laboratories in their ability to successfully identify common All were large facilities responsible for the routine culture of
pathogens is one step towards advancing standardised bacterial pathogens. A central laboratory (Manipal Hospital
laboratory practices that will lead to more reliable diagnosis Microbiology Laboratory, Bengaluru, India) prepared the
and improved patient care.[7] culture swabs (described below) and other study materials
for delivery to each study site. Each study site was shipped
Here, we report a field study, in which we assessed the
two identical sets of 34 culture swabs per batch; one was
ability of microbiology laboratories in India to reliably detect
cultured at the local site, while the other was returned to the
pneumococcus using several locally available types of blood
central laboratory (to examine the effects of transportation
agar media and compared the use of sheep blood agar. In
on the samples). Study sites were required to culture each
addition, we evaluated the effect of transport on the viability
of the 34 provided swabs on HBA and sheep blood agar
of cultures and laboratory performance.
(provided in a blinded fashion by the central laboratory) and
one agar routinely used by the study site [procured/produced
Materials and Methods individually by each study site, Table 1]. This resulted in
Bacterial strains and media 102 inoculated agar plates for each study site.
The bacterial strains used were as follows: SP (ATCC49619),
This study was conducted in accordance with the principles
Streptococcus pyogenes (ATCC19615), Streptococcus
of Good Clinical and Laboratory Practices and was approved
agalactiae (ATCC12386), Streptococcus mutans (ATCC35668),
by the appropriate institutional review boards and ethics
Staphylococcus epidermidis (ATCC12228) and Moraxella
committees at each site as well as by the ethics committee at
catarrhalis (ATCC817). All isolates were obtained from the
Manipal Hospital. CTRI registration was not done since there
American Type Culture Collection (Manassas, VA, USA).
The selection of bacteria was made based on common were no human subjects in the study.
pathogens isolated in respiratory specimens, mimicking Preparation of culture swabs
colony morphology and haemolysis patterns. These were Swabs were prepared so that each swab contained either SP
grown in brain–heart infusion broth (BHI) and resuspended alone or a combination of SP with a confounding bacterial
in BHI supplemented with skim milk and glycerol prior to species. Frozen (−70°C) bacterial stocks were thawed and
aliquoting and storing at −70°C. Participating laboratories subcultured overnight on sheep blood agar and then the
were supplied with both sheep blood agar (SBA) and human bacteria were resuspended in BHI broth. During the pilot
blood agar (HBA) plates obtained from Fitech Chemitron study, 0.5 MacFarlands concentration of each microorganism
Laboratories (Bengaluru, India). In addition, each participating was made and diluted and standardised based on the growth
on SBA done by the quadrant method. Heavy indicated
Table 1: Blood agar sources used in the study growth on all four quadrants, moderate indicated growth in
the first and second quadrants and scanty indicated growth
Medium Heavy Moderate Scanty Total was when the growth was in the primary inoculum site only.
Human BA* 6 4 5 15 Various combinations of the organisms were made using
Biomeriuex BA 1 1 1 3
different concentrations of SP and confounding bacteria
Delta BA 2 2 1 5
(moderate growth) [Tables 2 and 3]. Swabs provided along
Hi‑media BA 1 1 1 3
with Amies Transport Media (Hi‑media Laboratories, Mumbai,
Sheep EOS BA 0 1 0 1
India) were dipped in the suspension and then gently squeezed
Sheep BA (*) 5 4 9 18
Total 15 13 17 45
on the sides of the tube to expel the extra broth and stabbed
*The significance – Produced locally in the reporting laboratory. BA: into the transport medium. Each batch was made up of 34 swab
Blood agar sets in duplicate and readied for dispatch.
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Table 3: Percent recovery of isolates from either pure or mixed culture swabs
Bacteria Recovery of SP (n=60) Recovery of confounding bacterium (n=50)
SBA HBA Local agar SBA HBA Local agar
SP alone 77 77 77 ‑ ‑ ‑
SP + S. pyogenes 33 37 67 27 20 3
S. pyogenes alone ‑ ‑ ‑ 30 25 25
SP + S. agalactiae 13 3 20 37 27 33
S. agalactiae alone ‑ ‑ ‑ 35 25 40
SP + M. catarrhalis 67 73 60 23 17 3
M. catarrhalis alone ‑ ‑ ‑ 40 30 30
SP + S. epidermidis 47 43 63 30 33 67
S. epidermidis alone ‑ ‑ ‑ 45 50 100
SP + S. mutans 77 60 80 0 13 0
S. mutans alone ‑ ‑ ‑ 10 10 10
SBA: Sheep blood agar, HBA: Human blood agar, S. pneumoniae: Streptococcus pneumoniae, SP: Streptococcus pneumoniae, S. pyogenes: Streptococcus pyogenes,
S. agalactiae: Streptococcus agalactiae, M. catarrhalis: Moraxella catarrhalis, S. epidermidis: Staphylococcus epidermidis, S. mutans: Streptococcus mutans
The 102 swabs were shifted in 3 batches of 34 swabs per batch left the central laboratory to the destinations. The Bengaluru
with 21 SP with 15 of them in combination with confounding deliveries were also subjected to the same process, thereby
organism (3 per species), 10 pure cultures of confounding duplicating the sample transportation schedules of the
organism only (2 per species) and 3 containing no organisms. outstation deliveries, and in turn, ensuring that all laboratories
This gives a final figure of 63 SP with 45 of them being in received the material.[13]
combination with confounding organism, 30 having pure
The receiving laboratories subcultured the appropriate swab
growth of confounding organism and 9 with no organism in
on to the coded blood agar and reported the specimen as a
the study.
routine respiratory specimen. All the duplicate swabs returned
These swabs were prepared in duplicate sets. The swabs were to the central laboratory were subcultured onto SBA. The
immediately kept in a 2°C–6°C cold room before dispatch. laboratories were asked to record the organisms into a data
sheet and record the isolated organisms. A digital photograph
Pilot testing
of the primary growth to record the growth of the organisms
The simulated swabs were made in batches of 7 and kept
for cross verification was done. Laboratories were asked
in a cold room at temperature controlled conditions to test
to report the cultures within 72 h of receipt using standard
the viability of SP under storage conditions. It was seen that
techniques.[14,18]
the organisms survived in Amies transport media for 4 days
without loss of viability and concentration. This helped us to At the outset, we received the duplicate set of swabs from each
plan the dispatch with temperature controlled boxes from Blue centre on Wednesday, which was double the time it took to
Dart Temperature Controlled Logistics which assured us that transship the specimens across the country. The reason we sent
shipments would be maintained between 2°C and 6°C for more the full complement of swabs is to ensure that each swab with its
than 48 h.[3‑7,10‑15,17‑20,23‑28,38,40‑43] bacteria could withstand the temperature of transshipment to every
location. The swabs were subcultured on SBA on receipt in the
Media/swab distribution and testing
central laboratory and reported. The central laboratory took special
A total of three sets with 34 swabs each were sent across
care to see that the SP was obtained in the concentrations sent
with HBA and SBA media. Sets of 34 specimen swabs were
across, and it duly photographed the medium for documentation.
bundled together. This bundle along with its duplicate was
put in separately in the consignment. Each consignment was The transportation temperature was monitored by digital data
packed by 4.00 PM and 5.00 PM on Monday, the consignment loggers both to and from the study centres.[19] Once the reports
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the various mediums and many of them did not pick up the When a non‑haemolytic organism like M. catarrhalis was
organism even though this was the only organism present on present, the isolation rate was 53 out of possible 50 organisms
the plate. It is of interest that in most of the places the human with the isolation being picked up even when SP was scanty.
and sheep blood agars performed similarly where there was Here, it was the Sheep blood agar which performed the best
a distinct advantage in the isolation of the organism from the along with commercially produced medium with some locally
locally used medium, especially when mixtures were present. produced human and sheep blood agars performing well. It
is of interest to note that the organisms reported could be
When the isolate was analysed based on the material sent out
due to the easy recognition of an alpha‑lytic colony with the
as SP in pure culture, we saw that the isolation of the organism
waxy M. catarrhalis colonies being distinct and apparent for
was similar from human and sheep blood agar where 46 out of
laboratorians to recognise the pathogen. This contrasts very
the possible 60 isolates was obtained, and it was seen that the
much with the isolation of the organism from pure culture
organism was not recognised from 14 swabs each on human
where a lesser number of isolates was obtained as compared
and sheep blood agar. This loss of isolation was more marked
to the organisms sent out.
when the organism was sent out as scanty in proportion,
whereas the isolation was much better when the organism Here, we say that the rate of organism isolation was better
was sent out as heavy in proportion, with moderate being when the SP was scanty and moderate, while when the SP
in‑between. This brings to the fore the inability of the study was present in heavy amounts, and there was loss of isolation.
centres to recognise the pathogen even when the organism This was paradoxical.
was in pure growth and the loss of the organism is nearly 24% When the confounding organism was S. epidermidis, the same
which is a significant loss. Again this underscores the need to pattern of isolations as seen with the presence of M. catarrhalis
standardise the recognition and reporting of this pathogen. was observed. Here, again it was noted that in the presence of
In the local media, it was seen that the standardised medium a non‑haemolytic colony, the isolation was better than when
from commercial suppliers far outperformed the locally a beta‑lytic colony was seen.
produced media since medium standardisation most probably
played a significant role in allowing the initial growth of the In the presence of S. epidermidis, we got 45 isolations
microorganism and its isolation. out of a possible 60 which is good that is 75%. Here,
again the sheep blood agar performed well along with the
When the confounding bacteria was S. pyogenes, the isolation commercially produced sheep blood agars and the HBA
rate dipped to a little over 30% with the maximum loss produced commercially came a close second and the local
occurring in sheep blood agar which would give the wide zone medium again significantly did not support the organism. It is
of haemolysis on this agar where the study centres reported of interest here to note that in this group, the isolation in the
only 10 out of a possible 30 isolates on sheep blood agar. This scanty proportion of S. pneumoniae the loss was maximum,
isolation rate was similar on HBA where 11 out of possible 30 again underscoring the ability of the study centers to pick up
isolates was reported by the study centres which again showed the organism in all proportions; while the isolation rate in the
that the medium employed was not allowing the recognition moderate concentration was marginally lower in the isolation
of the pathogen SP in the presence of beta‑haemolysis which rate. Here, since two distinct varieties were present, it was
may have confounded the laboratories. Again it was seen that possible to pick up the organisms easily.
the local medium employed by the study centres could get a
better isolation rate of 20 out of a possible 30 organisms where The ability of the laboratories to pick up the pathogen in the
the maximum loss occurred on locally produced sheep and presence of a confounding alpha‑lytic organism was significant,
HBAs. This again underscores that the medium used should since we got the maximum isolation rate of 65 isolations. Here,
be standardised, and more importantly, we need to observe the it is to be noted that the laboratories overreported the isolation
colonial morphology carefully before we disregard a colonial of the SP since the S. mutans was reported as SP, since we got
type as not pathogenic in the examination and reading of plates 65 reports of a possible 60 isolations.
and picking and interpreting identification tests. This underscores the overreporting if we are not careful in
When the confounding bacteria was S. agalactiae, the loss of the interpretation of the Grams nature of the organism and the
SP isolation was the maximum with the organisms only being preliminary identification by optochin. It is to be remarked here
picked up when the concentration of SP was heavy in 6 out that just going by colonial morphology coupled to the Grams
nature would overreport the isolation of this organism and the
of a possible 30 specimens. When the SP was moderate, the
need to run controlled optochin, and perhaps, inulin would
isolation rate was 4 out of 30 and only 1 out of 30 when the
really augment the isolation and identification requirement.
organism was scanty. This again underscores the need to look
The advent of automated systems has also brought to the fore
for the pathogen in the presence of beta‑lytic colonies, and it
the optimal utilisation of automated identification systems,
was found that sheep blood agar was a little better than HBA,
which can give erroneous results if not tested appropriately.
and the media produced commercially performed better again
than locally produced media. It is of interest to note here that Overall it was seen that many of the study centers reported
the maximum loss was seen when this organism was present. Enterococcus (even though no such organism was sent across),
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though the study protocol clearly defined the organisms present other clinically relevant species. PLoS One 2013;8:e72353.
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